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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0262300 |
| Transcript ID | LotjaGi4g1v0262300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nuclear-interacting partner of ALK; TAIR: AT1G48950.1 C3HC zinc finger-like protein; Swiss-Prot: sp|Q80YV2|NIPA_MOUSE Nuclear-interacting partner of ALK; TrEMBL-Plants: tr|I1MUH5|I1MUH5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0262300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:62549405..62555575) extracted from Lotus japonicus Gifu genome v1.2.
CCCAATTCAATCTAGGCCGAGAGCACTATTTATGTGACAACAATCCATCTTTTTTTTTTTGATTTTTTTTAATAACAGAG AAGAGCACAATCCAAACGGTGCTTTTAAACGTGGAAATCACGGTGGCCACTGCAACAGAAGCTGAAACTGCCGTTGCCAT TCACCACCACCACCACCTCCTTTGCTTCTACGTCACCACCTTGCTCCGAAATCTGAATCGAACTCACACAATCAACATTC CATGGCTCATGATTCAGAGAAGAGGTTCCGCTCCATCATGAGCAAGCTCTTCCACCCTCCCAATTCACCATCCAATCCTT CCCCTTCCACCCCCAGGTTCCGATGCTGTTTTCCGTTTGTTATCCATGAAAATTTGATAATTACAGGACAGGAAACATGA ACATAGTATAGTATATATCTATCCTCTTTACATTCATGTGTGTTTGTCTGATTCTGTGTAACGGTTTAGACACTATCAAA TGTAGCTGTAGTTTGCTATTTTATTAGCATTGCATCTTGATAGTTCCAACTATTTGTTTTGATTTTGTTTGTATTGTTTT TCCTGATTTTAGTTGAAAAATTAGGGATTAGTAATGTGTGTTTCTGTTTGCAGTTCATCATCTGGGGTACAACTATCAGG GGGTAAGAAACGGCCTTACCAGTCAATTGCTACAGGGGTGATGGAGCTGAATCGTAGAGGGGATGTTGCTGAGGGGCATC AGTCGTCCTCAGCTGACTCCCAAGGGCAGCTCTGTCGGCCGTGGGATCGTGGTGATTTATTGAGGAGATTGGCCACATTC AAATCTATATCATGGTTTGCTAAACCCAAGGTTCTTTCTAGCTGCCCAGCTTCTTTCCTTTTTTTTATTTTTTATTGTTA CCTGTTTAGCAAATGAATTCTTGTAATTTTATCTCCTTATGTATACGTGCATTTAAGGGTCATAAGTGTTTGTTAGTGAG GAAACATAAGAGGCAAATACTCGACAATCTTGAGAAATCGTACAATTTTACAATTCGAGGTAACCGAAACGAGTTACATT GTATGTAAACTCTAATTTTGATAAACTCGGTTAAACTCATGAATTTACTTCTGAGTTCACGAGTTTAGCAAAAAGTTTAA ATAATAGGGTAAAGACATGTGAGTGGTTGTATATTATATTCGAACACGCTCTCTCACGTGGATAATGTGCGACATGGCCT CCTATCTTATACTGAAATTCAACTTCAGTAGAAATAATGAGGATAATAAGGATCAAACTCTAAACCACTTAGTCATAGAA TTTTAGATACCATGTCAGGAACTAACTATCCTTAAAGCAAGCAATTGGTTGAAGACACGTGAATGATTTTACATTCTATT TCTGACAATAACATTTATCAACAACCAACTTTCTTTTCTTATCCTCCTCTTCCATTCTATTTCCTTCAAATTTCACAGCT CATCTATTGACTTCTGATATTTACAGATAGTGAGTGCAGTAAATTGTGCTAGAAGAGGTTGGATCAATGTGGACGTTGAC ACCATAGCATGTGAAGCATGTGGTGCACGTCTTCTTTTTTCTACATCAGCATCTTGGAATCAGCAGCAGGGTAAGCCATT TTTCCAAATTATTATATAAGAAAACATTCAATGGTATCCATATTCTAAGTTCTAACCAGAATGCAATTTATTCAGTGGAG AAGGCAGCCTTGGTCTTTAGCTTAAAGTTGGATAGTGGACATAAATTACTTTGTCCATGGATTGACAATGCCTGCAATGA AACACTCGCAAGATTTCCTCCTACAGCTCCTCCTGTATTAGTTGACAATTTCAGAGAACGATGCTCTGCTCTCTTGCAAC TGTCAGCTCTTCCTCGTGTTTCATCTTCAGCAATAGACTACATGCAAAGCCCATTTCTGGAGGACTTTCTTGGACAATCT TTGATGCTTGAGTGTGGAGATGGATCTGCCAATAGTTCTGAGATAGAAGTTAGTAGTCAAGCGGAACTGAAATCGTATTG TCAGGTAAGAACAAGTTTTTTAGAAAGTCCAAATTCTTGTAAATGATGGTTAGTGCATTACTAAATTTTGTGGGCTCCTT TTAATTTTCTTTCCTATCTTTTAGTTGATAATTAGTGTGTTATTAAAATTTTCAGGCTCAAAAGCTTATAAGTTTATCCG GTTGGAAACTTCGTTGTCTACCTTATGTAGTTGATTGCAAGGATTTATCAGATCAATCTCTTAAAAAGAAAACTATCCAA GAATGTTCCCAAGTAGTTGCTGATGGGAAAAATAATAATCTGATTGTCTATTCTGCTGGGACGGATGAAAATTCCAAGGA TTTTAATTGGGAACAGATAGATCCCCATTCTGCAGTTTTAGATTGCACCTTATGTGGAGCAACTGTTGGATTGTGGGCAT TTAGTACACTTCCACGGCCCGTGGAATCAATCAGATTAGTGGGATATGCAGAGGTGAATGGTGAAAAGGATTCTGTGACC CCCAATTCATTCATTAGAAATGATCTTGAAAATAGGCAGGGTGTAAATAACAACATGCCTGACATTGCAAATTCATCAAA GGGTACACCTTCGAGTCTAAATATGACAATTGCAGGGGGTCCTCCCCCAACAAAGCAGAACTTTAAAGCAATAATATCTC TGCCTATTATTGGTCAGAATTTAAGGACCCGTCTTTCTTATGATTCTGATTTTAGAGATCATGTTTTTGTCGTTGGAGGT GATATTCAGTCCGATTCACAGGAAGGGATCAGAATTCAGGAGACAAATGATAACACAGATCCTACTGGACAACTTGTTCC TGTGACATCTGAAATCAGGAAAATTCCAGGTTATGAAACTGGTTCTCAAGCAAACATTCATGATTCAGTTGTAGACAATG TTATGGAGGGCATTGACTATGCAGGACAACCTTCCGGTTCTAAGGATAAGATGCCTGCACACACAGAGACAGATGGGTTG AAGTGTTCTTCAGCTGGACACCCTAGTAGCTTTAAGGTTAGATTTTTTATTTGTTAAATAGATGGCATGTTGTGATAATA GTAGACAAAACTACTGCTATGTGATTATTGCATCTAGTAATCACTAACATAAAAAATTCTAATACTATCAAAAAGAGGAA TAAATATGGTAAAGGTCAGAAATTAATTTTCTTGTTTGGAAGTCCATGTTAACTATAATATTGCTGTGCAGAAAGACTTG ACAGAAGATGAAGCACTTCCTGTTCCACATAAGTCTTTGGATAAGGAAGTAAGTATAGTTGAAGCTTCTGGGGTCAAAGA CAGAGTAGAGAATCCCATTAGCAGTGAAAATGTGCATAGTAGCTTAGGTAAGCACACGATTTAGTAGTTCCTTGATAGAT CATTACCATTGAATATTTGAATGTAAATTAGAGTCTAACATATATTCTTATTGGCATGCATCATTGTCTGTTTTGCAATG ACAATATGCCGTTCACTTGTCACCATGAGTTAATTTACAATATGAATGCATGATTTAAGAATAATACTCTTTGTTTTCCA GGTAAGTTTAAGAGTCCAACAGGGTCTGATAAAGCAATAGAATTCGACCCAATCAGGCAGCATAGACACTTCTGCCCCTG GATCGCATCGATAGATGGTGGCGAGCCTGGGTGGAAACAAACATTATCTGCTCTGTATCATCAGCAAAAACATTTGCCTC ATTCACCAAACAGTTCTCCAACATCTATGTCCATTATAAAGGTATTTCTTCCAGATCTTACTAACTCTTATTTATTCTAT GGATGGGCTTTTATGTTAATTGATAGATAGCTACATTATGGACAAGAGTGCTTGGAATGACTCTGCCTTATTTTTTATTA GAACATAGTGCAATCCATTCTTTGACAAACCTATGTTTTGTACTTGAACGAAAACCTCAAAGCTGGATATATGGGTCTAG ATTTTTTTAACAAGAAACCAGGTTATCCTGTTGCTCAAAGAGTCATTGTATAATCATGCAAGTGAGGATAAATTATATAC TGTTAGAAACACGGAAAGAATGGGTGATAATTTTAATATTTCATGTTGTCTCAACTTCTTTATGTGACACATTTTGGTGG AAGTAGCAACAAGTTATTCCTTTCATGGTCTCTGAATATCTGCATTTGTCCAACTGTTCCTTTCGGAGCTTCACTGTCTT ACCATATACTGTGTTTATGCAGGTAGATGACCCTGTCGGTTCTGTTAGAAAGCTTTTCATGTCTCCATCAAAGAAAAGAG TGAAGCTCAATCACATTTCAGGCCACAATGCAGAGCATAGGTAGCTTAGGGCCTGGGTGAGATGGTCCTAATTCAAGAAG CCCCCCTCCTTACCGTAAACTATTTTGTATACTGCCATTTTTCTTGACTTGTTATTCCATTTAAAATCTCTGTAAGGTGT AATTGTTGTATCAAAAGTTCATTTGGATTTTCATGACATAACATACCTGGATCGATCCCCTTCCTAAGAAAAGAATATAG TTTGTTGCACCTTGATTTGACATTTCGCCCCCTCATTTTTAATACAAGTAGAAGACTTTACAAAGGGTTGGATGACAATG GAGATTGTTATAGAACGTAAAAGTTCTCATACATAGAAATTCATCTAGAGAAGGGAGTGAATACATTTTTGTGCTACTCC ATTATACCACAGTTTGTAACAATAACTTTCGAATAAGGGCGGTTGAATCCCCTTTCTGCTACAACAGCCCTCTTGTCTCC GATAAGCTTTGCCACCCTGCAATATGAGTATAACTGATTAGTATTACTATTATATCATAGACAGTTAGACACAGCTTCAA TTGCAGATATTCAACGGGTGGGAAAAAGGGGATAAAGTCCCTCAAGAACTCATTAACCATTTCAAACTTGTCATGGTGAA CATGAGTAGTATCTCTTCTATGTACTGATGAGTTGTGATAAACCCTTACTCATAAGCTAATTTGAGATATAAGTTCAAAG CAGCTTATAAGGAAATCATAAGCTTATTCAAAAACTTGTTACAATATTTGGCTGTTAGACTCACCTAAAATAGGGAGAGC TCGTATTCTCCTGTACGGTTTTTACCTGACCAATCCTCTGCACAACCTCCAACCCTTCTAATACTCTTCCAACTACCAGA GATGATGCATCCAATTCTGGAGAATCCTTTGTGGCAATGACAAATTCTGTCCCATTGGGATCAATTCCAACTTCTTCTTG ATCAATCTCCAGCTTCCCCATTCTTGCAACCAGCTTCATCTTTGGAGGCGGTTTAGACGGGTCTCTCACAATAATGCCAA CACTTCCAGCCACATTTTTAGTCCCAGGGCACCCTTCATAAGTTCTCTCCCATTCCTCAACAAGACTATCAGCTGCCAAA TCACCCCCTGTCCCTCTGGCCATTTCTGCATCCACGCCATAGGATCGAAGTCCACCGTGTTGGACATAATTGGGCAGGAT TTTGACAAACTCTTTTCTTCTGTAGCTAACACCAGCAGCTCCACTGACAATCTTGCTAAACCTATCAACTCCTGCAGGGA CATCATCTCCATATAGCCCTATAGTAATGCGACCGACAGGTTCGCGATCAATGGCTATGTCAAAAAACACTTTCTTAGTA GGTTTTCTTTCAGTGCAGCTGGGAGTGGTTGTGGTAGTTAAATTCTCTTCTGGTTTATCACTGTTACTTGGCTCGACGAC ATTTTCTTCTGCTCTTGCTTTGGTTCCATCCACTGCCTGAGCACCCAAAAGAAGAAGCAAGCTAGAGTTGCTGAGGATTG TGAGCTCTCTACGTGACAATCTGCATTGCTGTTTGATGATTGGAAGAGTGGGTAATAGTTGTAATGATGAAGGAGGTGGT GCTGATGTACGAGTTGGTGGATGATTGAATGGTTGAGGGGAAGATCCTAGTACTCTTGGGTTTTGTAGCATTTTTCTGCT TCTGTTGGCTCTGCTTATGAATTGGTTTATGTTACTGTCTGCATTAGGTTTTTCTTTGGGAGGTTATGGGATTTAGAAAA GAAACGATAGAGCAGAATAGATAGAGTAACAGATACTGAAGAGATTTCGTGGATAAGAAACATGGAAATAGCTATGTTCT GTGGCAACCATTTGTTTGTTGAATATCAGAATTTTATTATACACACAACTTCATATGGGTCCCTTTAAGTCTTTAACTAT TTGAAAAAATA
CDS sequence (LotjaGi4g1v0262300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCATGATTCAGAGAAGAGGTTCCGCTCCATCATGAGCAAGCTCTTCCACCCTCCCAATTCACCATCCAATCCTTC CCCTTCCACCCCCAGTTCATCATCTGGGGTACAACTATCAGGGGGTAAGAAACGGCCTTACCAGTCAATTGCTACAGGGG TGATGGAGCTGAATCGTAGAGGGGATGTTGCTGAGGGGCATCAGTCGTCCTCAGCTGACTCCCAAGGGCAGCTCTGTCGG CCGTGGGATCGTGGTGATTTATTGAGGAGATTGGCCACATTCAAATCTATATCATGGTTTGCTAAACCCAAGATAGTGAG TGCAGTAAATTGTGCTAGAAGAGGTTGGATCAATGTGGACGTTGACACCATAGCATGTGAAGCATGTGGTGCACGTCTTC TTTTTTCTACATCAGCATCTTGGAATCAGCAGCAGGTGGAGAAGGCAGCCTTGGTCTTTAGCTTAAAGTTGGATAGTGGA CATAAATTACTTTGTCCATGGATTGACAATGCCTGCAATGAAACACTCGCAAGATTTCCTCCTACAGCTCCTCCTGTATT AGTTGACAATTTCAGAGAACGATGCTCTGCTCTCTTGCAACTGTCAGCTCTTCCTCGTGTTTCATCTTCAGCAATAGACT ACATGCAAAGCCCATTTCTGGAGGACTTTCTTGGACAATCTTTGATGCTTGAGTGTGGAGATGGATCTGCCAATAGTTCT GAGATAGAAGTTAGTAGTCAAGCGGAACTGAAATCGTATTGTCAGGCTCAAAAGCTTATAAGTTTATCCGGTTGGAAACT TCGTTGTCTACCTTATGTAGTTGATTGCAAGGATTTATCAGATCAATCTCTTAAAAAGAAAACTATCCAAGAATGTTCCC AAGTAGTTGCTGATGGGAAAAATAATAATCTGATTGTCTATTCTGCTGGGACGGATGAAAATTCCAAGGATTTTAATTGG GAACAGATAGATCCCCATTCTGCAGTTTTAGATTGCACCTTATGTGGAGCAACTGTTGGATTGTGGGCATTTAGTACACT TCCACGGCCCGTGGAATCAATCAGATTAGTGGGATATGCAGAGGTGAATGGTGAAAAGGATTCTGTGACCCCCAATTCAT TCATTAGAAATGATCTTGAAAATAGGCAGGGTGTAAATAACAACATGCCTGACATTGCAAATTCATCAAAGGGTACACCT TCGAGTCTAAATATGACAATTGCAGGGGGTCCTCCCCCAACAAAGCAGAACTTTAAAGCAATAATATCTCTGCCTATTAT TGGTCAGAATTTAAGGACCCGTCTTTCTTATGATTCTGATTTTAGAGATCATGTTTTTGTCGTTGGAGGTGATATTCAGT CCGATTCACAGGAAGGGATCAGAATTCAGGAGACAAATGATAACACAGATCCTACTGGACAACTTGTTCCTGTGACATCT GAAATCAGGAAAATTCCAGGTTATGAAACTGGTTCTCAAGCAAACATTCATGATTCAGTTGTAGACAATGTTATGGAGGG CATTGACTATGCAGGACAACCTTCCGGTTCTAAGGATAAGATGCCTGCACACACAGAGACAGATGGGTTGAAGTGTTCTT CAGCTGGACACCCTAGTAGCTTTAAGAAAGACTTGACAGAAGATGAAGCACTTCCTGTTCCACATAAGTCTTTGGATAAG GAAGTAAGTATAGTTGAAGCTTCTGGGGTCAAAGACAGAGTAGAGAATCCCATTAGCAGTGAAAATGTGCATAGTAGCTT AGGTAAGTTTAAGAGTCCAACAGGGTCTGATAAAGCAATAGAATTCGACCCAATCAGGCAGCATAGACACTTCTGCCCCT GGATCGCATCGATAGATGGTGGCGAGCCTGGGTGGAAACAAACATTATCTGCTCTGTATCATCAGCAAAAACATTTGCCT CATTCACCAAACAGTTCTCCAACATCTATGTCCATTATAAAGGTAGATGACCCTGTCGGTTCTGTTAGAAAGCTTTTCAT GTCTCCATCAAAGAAAAGAGTGAAGCTCAATCACATTTCAGGCCACAATGCAGAGCATAGGTAG
Protein sequence (LotjaGi4g1v0262300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAHDSEKRFRSIMSKLFHPPNSPSNPSPSTPSSSSGVQLSGGKKRPYQSIATGVMELNRRGDVAEGHQSSSADSQGQLCR PWDRGDLLRRLATFKSISWFAKPKIVSAVNCARRGWINVDVDTIACEACGARLLFSTSASWNQQQVEKAALVFSLKLDSG HKLLCPWIDNACNETLARFPPTAPPVLVDNFRERCSALLQLSALPRVSSSAIDYMQSPFLEDFLGQSLMLECGDGSANSS EIEVSSQAELKSYCQAQKLISLSGWKLRCLPYVVDCKDLSDQSLKKKTIQECSQVVADGKNNNLIVYSAGTDENSKDFNW EQIDPHSAVLDCTLCGATVGLWAFSTLPRPVESIRLVGYAEVNGEKDSVTPNSFIRNDLENRQGVNNNMPDIANSSKGTP SSLNMTIAGGPPPTKQNFKAIISLPIIGQNLRTRLSYDSDFRDHVFVVGGDIQSDSQEGIRIQETNDNTDPTGQLVPVTS EIRKIPGYETGSQANIHDSVVDNVMEGIDYAGQPSGSKDKMPAHTETDGLKCSSAGHPSSFKKDLTEDEALPVPHKSLDK EVSIVEASGVKDRVENPISSENVHSSLGKFKSPTGSDKAIEFDPIRQHRHFCPWIASIDGGEPGWKQTLSALYHQQKHLP HSPNSSPTSMSIIKVDDPVGSVRKLFMSPSKKRVKLNHISGHNAEHR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 45 | 45 | - | – | |
| PANTHER | 6 | 673 | 668 | 1.3E-161 | – | |
| MobiDBLite | 28 | 42 | 15 | - | – | |
| Pfam | 81 | 205 | 125 | 1.4E-32 | ||
| MobiDBLite | 508 | 541 | 34 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi4g1v0262300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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