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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0262700 |
| Transcript ID | LotjaGi4g1v0262700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BED zinc finger,hAT family dimerization domain; TAIR: AT1G18560.1 BED zinc finger and hAT dimerization domain-containing protein; Swiss-Prot: sp|P08770|TRA1_MAIZE Putative AC transposase; TrEMBL-Plants: tr|K7MLB0|K7MLB0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0262700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:62568720..62572224) extracted from Lotus japonicus Gifu genome v1.2.
CAATGAATGAGTGGCTAAAACTCAACTCATACATAACAGGAGCCACTGTACTCAACTCAACTCAACTCAACTCAATTGTT CCTTTCTTCTCTTTTCTATCACGCTAAGCCGTGTTTGGCTAAACAGCGAAACTGACAGATAGAGTCATAGAGATCTGCAG CGAGCGAGCGACGCGGCTCTAACAAACTCAATCCCTTCTCTCTCTCTCTCTCGGCTCCGATCCACTCCTCCACGCCGATC CTCCCATCAGCTCTCTCTCTCTCTGCGCCAAAATTCAATTTGATTTCATGAACTCTCCCTCTCCCTCTGGTATGCACAAT TCACTTTCAATTCAATCTCTTCATCATAATTCAAACACCTATCTATGCTATGCTATGCATATTCTCATCTTGTGTTTTTC CTTTCCCTCACTGTTCAGGCAGGTCACAGTTGCTGTAGATTACATGGACTGGGGTGGTGGTGTTATTAACAACAATAACA ATAACAATTTCAGAACAACTTACAAAGGTTAGAATAGAATAGACCTGGTTTTCACCATTTTGTTTGTCACATTAAATTGG ATTAGCTTGAAGCATGCAATTTTTTTATGTCACTGAATTATATTTTTTTCACACTACTTTGAGTAGATGATCATAAATCC ATGATGGACCTGGCACTCATTTCAAACATGGATCCTGTCAATATTGGTTTGGGTTGTTCAGAAAAGCAAGTTCCTGTCAC TTCACTCAAGCCAAGGAAGAAGACAATGACATCAGTTTACTTGAAGTTCTTTGAGACTGCTGCTGATGGCAAGACTAGGA GATGCAAGTTTTGTGGACAGAGCTATTCGATTGCGACCGCCACAGGTTACTTTCTGTTATCGATTATCACCCGTTGATGC CTTTCTTATTCAATAGGCTGTGTTTGACTGTGTGTCATGGTGTCACTTGTGTTTATCATAAGTCATAACCATTGCTATGA AACCTCAAACATGCTTATGAGACTTTGTTATTTAATGATATCAAGCTTTTGGCATTTCACCATGTTTCAGTATATATTTG AAGCAAGATCAATTTCACAATGTATGTAATAACAAGTTTGGTTATAAAGATTTTTCCCTAGTAATTGTATTTTCTTGTAC ATCCACTAAAGTTTGTTCCTTCATGAAGGAAATTTGGGGAGGCACCTTGCTAATCGCCATCCAGGCTATGATAAGTCAGG GGATGCTGTCAGCAATTCGGCATCCCGGAGCACTGTTACAATCAAGAAGTCTCAGCCTCAAGGAAAACCAAACCAGGTGG ATTATGACCATCTAAATTGGTTAATCGTTAGGTGGCTTGTTTTAGCTTCTCTCCCTCCCTCAACCCTGGAAGAGAAGTGG CTTGTGAACTCCTACAAGTTTCTTAATCCATCTATACAACTCTGGCCAAGTGACAAATACAGAACTGTACTTGATGAAGT TTTCAGAAGCATGAGAGAAGATGTAAGAGCATTGTTAGAACAGGTTTCTACCAAGCTCTCCATCACACTTGATTTCTGGA CTTCCTTTGAACAGATCTTCTATATGAGCATAACATGTCAGTGGATCGACGAAAACTGGTCCTTCCAAAAGTTGCTTCTT GATATCTGTCGCATACCTTATCCATGTGGCGGTGCAGAGATCTATCGTTGCCTTGTAAAAGTTCTTAAATTTTACAATAT TGAAAACAGAGTCCTGTCCTGTACTCATGATAATAGTTCAAGTGCCATACTTGCCTGTCATACGTTGAAGGAGGACTTGG ATGATCAGAAAATTGGGCCATTCTGTTATATTCCCTGCGCTGCCCGAACTTTGGACCAGATAATAGATGATGGGTTAAGA TCCACTAAACAAGTAATTTCAAAGATCCGTGAATTTGCAATAGAGTTAAATTCCTCATCAGTGATCTCTGAGGATTTCAT TCAATTATCTACAGCTTATCAGGAAGGTACCTGGAAATTTCCTCTTGATGTTTCACCAAGGTGGAGTGGAAACTACCAGA TGCTTGATCTTTTTCGCAAGGTATCATTATCATTACTTTTAACAACTGCTTTAATCAGTGAGCATAAGAACCATCCAAAA AAATTCCTGGTCACACACACACAATCGCACTGCAGGATCGATGTTTTATGAGATAGAACTTGGATTTGAAAATGGCTTTT CATGCCTGAAAATTTTCATATTTGCTCAAATTACAAAAAGAAAGAATTTTCTTTGTTTGCTAATGAATTCGGCTTGTGAA TTGAATCATTATAATAACGCATCTTGTGATGCATCATGCATACATTTGAAAATTAGAAACAATGGAACATTGTAAAACAA GGTCTATATTTTTATGATGCAGGCAGGTAAATCAATGGATGCTGTTATTCGTAAATATGAGGATACGCTGGGGAGTAAGA TGCTGCTGGGCTCTTCTGACAAAAGTTTAGGTAACATCATGCATCAGTTTCTTGAACCATTCCACAAGACCACAAACGAC ATCTGCACGAGTAAGGTCCCAACAGTTGGGCTTGTCCTTTTCTTCATGGATCACATCTCAGAAACAATTGCTTCCTGCAG AGAATCACGTCATAGCCCGGAATGGCTAAAAAGTGCTGCAGAAGAAATGGCTAAGAAGGCCAGGAATTATATTAATCAGG TTTGCAACATATTTACGTACATGACAGCAATTCTAGATCCTCGATTAAAGGCAGAACTGATCCCTGATAGTTTAAATTCT GAAAGTTTTCTGGACGAAGCAAGAACTCATTTCATGAGAAATTATTCTACCAGCCATTTCTCATCCATGAGTTCTGGATA CAATGCTCAAGAAATTGAAGATGGAGGAAGCGTTTCGTTTGCTGAGGAAATAGCTCGGAAGAAACGAAGAACGAGTATGA GCTCCACCACAGATGAGCTTACACAGTACCTCTCAGAGGCTCCGGCTCCTATGGCTATACCAACAGATGTTCTAGAGTGG TGGAAGGTTAACAGCACACGCTACCCTAGACTATCTATGATGGCTAGAGATTTCTTGGCTGTGCAGGCAACTTCAGTTGT GCCTGAAGAAATTTTCTGTGGCAAGGGTGATGCAATTGACAAGCAACGGTTCTGTATGCCGCTTGATACCACGCAAGCTA TTCTTTGTATCAAGTCATGGATTGAGGTTGGCATCAAGTTTAAGTTTAAGTCGACTGAGATAGATTATGAGAGGTTGATG GAACTAGCAGCGGCTGCAGCTTCAACAGATAATAGCCCTGTGAGTTCTGTTGAGAAGAAGCAAAAATAATGGTAGAAGAT GGCAGCTCTAAAGGGTTAAAGTACTTAATTTAGGAAGCAACATTATTGACATTGTTAGATTATATCTTCACGTTGACTAA TCTCCACTTATCTCAAACTTAGAAAAGGTAACTTGGTGTTTTGTCTAGAAACTTTGTTGTATTAATATTATGTAATATTG TACAGTTCTCAATTCTGGAAATTACTAAACCAGAGAAAAATCAAATGAAAAAAATTAGAAAGATC
CDS sequence (LotjaGi4g1v0262700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACTGGGGTGGTGGTGTTATTAACAACAATAACAATAACAATTTCAGAACAACTTACAAAGATGATCATAAATCCAT GATGGACCTGGCACTCATTTCAAACATGGATCCTGTCAATATTGGTTTGGGTTGTTCAGAAAAGCAAGTTCCTGTCACTT CACTCAAGCCAAGGAAGAAGACAATGACATCAGTTTACTTGAAGTTCTTTGAGACTGCTGCTGATGGCAAGACTAGGAGA TGCAAGTTTTGTGGACAGAGCTATTCGATTGCGACCGCCACAGGAAATTTGGGGAGGCACCTTGCTAATCGCCATCCAGG CTATGATAAGTCAGGGGATGCTGTCAGCAATTCGGCATCCCGGAGCACTGTTACAATCAAGAAGTCTCAGCCTCAAGGAA AACCAAACCAGGTGGATTATGACCATCTAAATTGGTTAATCGTTAGGTGGCTTGTTTTAGCTTCTCTCCCTCCCTCAACC CTGGAAGAGAAGTGGCTTGTGAACTCCTACAAGTTTCTTAATCCATCTATACAACTCTGGCCAAGTGACAAATACAGAAC TGTACTTGATGAAGTTTTCAGAAGCATGAGAGAAGATGTAAGAGCATTGTTAGAACAGGTTTCTACCAAGCTCTCCATCA CACTTGATTTCTGGACTTCCTTTGAACAGATCTTCTATATGAGCATAACATGTCAGTGGATCGACGAAAACTGGTCCTTC CAAAAGTTGCTTCTTGATATCTGTCGCATACCTTATCCATGTGGCGGTGCAGAGATCTATCGTTGCCTTGTAAAAGTTCT TAAATTTTACAATATTGAAAACAGAGTCCTGTCCTGTACTCATGATAATAGTTCAAGTGCCATACTTGCCTGTCATACGT TGAAGGAGGACTTGGATGATCAGAAAATTGGGCCATTCTGTTATATTCCCTGCGCTGCCCGAACTTTGGACCAGATAATA GATGATGGGTTAAGATCCACTAAACAAGTAATTTCAAAGATCCGTGAATTTGCAATAGAGTTAAATTCCTCATCAGTGAT CTCTGAGGATTTCATTCAATTATCTACAGCTTATCAGGAAGGTACCTGGAAATTTCCTCTTGATGTTTCACCAAGGTGGA GTGGAAACTACCAGATGCTTGATCTTTTTCGCAAGGCAGGTAAATCAATGGATGCTGTTATTCGTAAATATGAGGATACG CTGGGGAGTAAGATGCTGCTGGGCTCTTCTGACAAAAGTTTAGGTAACATCATGCATCAGTTTCTTGAACCATTCCACAA GACCACAAACGACATCTGCACGAGTAAGGTCCCAACAGTTGGGCTTGTCCTTTTCTTCATGGATCACATCTCAGAAACAA TTGCTTCCTGCAGAGAATCACGTCATAGCCCGGAATGGCTAAAAAGTGCTGCAGAAGAAATGGCTAAGAAGGCCAGGAAT TATATTAATCAGGTTTGCAACATATTTACGTACATGACAGCAATTCTAGATCCTCGATTAAAGGCAGAACTGATCCCTGA TAGTTTAAATTCTGAAAGTTTTCTGGACGAAGCAAGAACTCATTTCATGAGAAATTATTCTACCAGCCATTTCTCATCCA TGAGTTCTGGATACAATGCTCAAGAAATTGAAGATGGAGGAAGCGTTTCGTTTGCTGAGGAAATAGCTCGGAAGAAACGA AGAACGAGTATGAGCTCCACCACAGATGAGCTTACACAGTACCTCTCAGAGGCTCCGGCTCCTATGGCTATACCAACAGA TGTTCTAGAGTGGTGGAAGGTTAACAGCACACGCTACCCTAGACTATCTATGATGGCTAGAGATTTCTTGGCTGTGCAGG CAACTTCAGTTGTGCCTGAAGAAATTTTCTGTGGCAAGGGTGATGCAATTGACAAGCAACGGTTCTGTATGCCGCTTGAT ACCACGCAAGCTATTCTTTGTATCAAGTCATGGATTGAGGTTGGCATCAAGTTTAAGTTTAAGTCGACTGAGATAGATTA TGAGAGGTTGATGGAACTAGCAGCGGCTGCAGCTTCAACAGATAATAGCCCTGTGAGTTCTGTTGAGAAGAAGCAAAAAT AA
Protein sequence (LotjaGi4g1v0262700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDWGGGVINNNNNNNFRTTYKDDHKSMMDLALISNMDPVNIGLGCSEKQVPVTSLKPRKKTMTSVYLKFFETAADGKTRR CKFCGQSYSIATATGNLGRHLANRHPGYDKSGDAVSNSASRSTVTIKKSQPQGKPNQVDYDHLNWLIVRWLVLASLPPST LEEKWLVNSYKFLNPSIQLWPSDKYRTVLDEVFRSMREDVRALLEQVSTKLSITLDFWTSFEQIFYMSITCQWIDENWSF QKLLLDICRIPYPCGGAEIYRCLVKVLKFYNIENRVLSCTHDNSSSAILACHTLKEDLDDQKIGPFCYIPCAARTLDQII DDGLRSTKQVISKIREFAIELNSSSVISEDFIQLSTAYQEGTWKFPLDVSPRWSGNYQMLDLFRKAGKSMDAVIRKYEDT LGSKMLLGSSDKSLGNIMHQFLEPFHKTTNDICTSKVPTVGLVLFFMDHISETIASCRESRHSPEWLKSAAEEMAKKARN YINQVCNIFTYMTAILDPRLKAELIPDSLNSESFLDEARTHFMRNYSTSHFSSMSSGYNAQEIEDGGSVSFAEEIARKKR RTSMSSTTDELTQYLSEAPAPMAIPTDVLEWWKVNSTRYPRLSMMARDFLAVQATSVVPEEIFCGKGDAIDKQRFCMPLD TTQAILCIKSWIEVGIKFKFKSTEIDYERLMELAAAAASTDNSPVSSVEKKQK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 33 | 683 | 651 | 0.0 | – | |
| PANTHER | 33 | 683 | 651 | 0.0 | – | |
| SMART | 61 | 108 | 48 | 5.2E-11 | ||
| MobiDBLite | 108 | 135 | 28 | - | – | |
| MobiDBLite | 113 | 135 | 23 | - | – | |
| SUPERFAMILY | 197 | 654 | 458 | 1.14E-51 | ||
| Pfam | 433 | 511 | 79 | 5.3E-10 | ||
| Pfam | 570 | 652 | 83 | 7.1E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi4g1v0262700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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