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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0262900 |
| Transcript ID | LotjaGi4g1v0262900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Translation initiation factor eIF-2B subunit delta; TAIR: AT5G38640.1 NagB/RpiA/CoA transferase-like superfamily protein; Swiss-Prot: sp|P41111|EI2BD_RABIT Translation initiation factor eIF-2B subunit delta; TrEMBL-Plants: tr|I1MUH1|I1MUH1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0262900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:62572534..62575907) extracted from Lotus japonicus Gifu genome v1.2.
TGTTACAACGCAACTCTTGAAACTGAAATTCTTTCCACACCCAGACCATATAAAACCGAAACCTCCCTATAATATCGAAT CCCGTATCTTCCGGTAACTGAAAACACACGCTAACACGCGCACTGCGTGCAACTCGTTTTCCTCTCCGCTCATGATTCCA CCGCCACTTCCGCTCTCCGATAAATTCTCCGCCGAACGCCACGTGTCACCTGGGAGCAACAATTTCTCCTCGGATTCTTC TCCATGCTTTCGTCACGGCAGTTCCAGTTCCCCTCGCCGAGGGTTTGGTTTGTCGCCGCCGCCGCCGATTCCTCTCCAGG CTCGCATTGGTAAGTAAGCATTGATTAATTCGTCGTTTATTTGTAGTAAATTGTAATCACGCGTGATTCATCATTCATGA ATACATATATTCTAGATTCATGGATTAATTTTCACGCATCTTCAATTTCATTTCACATGTTAGAGAAGAGTGAAGAGGAA GAGGTTATGCAGTCATCAAGTTCAACGCCATTGAAAGCAAAAACTACCAAAGCTGAGAGACGAGCCTTGCAGGAAGCGCA ACGAGCTGCTAAAACTGCTTCCAAAGGAGGTAATTGTTTCAGATTCCTGTATTTGTTCATTGATTAGATTTGTATTTGTT TAACTAATTATAAATTCTAGTGTTATAGTGGTTCTTTTATTCGAATCTCAAATTCTGTACATAGCATGGTAGAATTAGAA TGATCATTGCATCATTTCAGTTAGTTTTATCAAGTTTAAGATTGAATCAACCTTGCATCTTTTTTTCTCCTTTTGTTTTG TTTTGCTTAAACTTGTTGATGGAATTCAATAAAATTGTTGTTTGCCTTATGCCCTAAATTTGGCCTTGAAAGAGACTATA TGGAATTTGGGGTTTCTGTGAATGGTTCTTAATGTGTTCTATAATTCAGTTTCCGTATTCAGGACTCGGCTGCGCTTCAT ATAGCTCTTGTAGTTTGTAAATATGCTTTCTGATTTTTTTGTTCTGTATCCAGCTGGGGGAAGTAAAGAAATTGCTGAAC CTGGGAATTCCCCAAGTAAAAGCACAAAGCAGTCTTCACAAAAGAAAGATGTTCCTCCCTCTCCATCTTCAGTGGCTGCT GACAAAAAGGCAGGAGAACGTCCTTTTGGGAAAGATAGGAAAAAGGATGCTGCTCCTCCTCCTCGGATGCAATTCGATGA CAAAAATAGAGTGGAAAAGGCTAAAAGGAATGCACTAGTCAATCCAATCCAATCTAGAAACAGGGTTGAATTGTTTCTGC ATTTGCCTCAATATGAACGCACCACTCAGCTTTTGAACCTTGAATCAAAGTTTTTCCACCTTGATTCAGTGCATCCTACT GTGTTCCAGGTACTATTATTTCATAGCTATGCATTTCTGTCTCTTAATATCCTCATTCCATACTGAATCTCCAATCCTTT TGACGTTAATCTTGGTGTTTCTCAATATTATCACACTATTTTGATGCCTGAATATACTGTCACTACTCAGTAGCATACAT GAGTCAATGTTTACAGATTTGACATGGAATTGTTATTTGAACTTTGAACAGCATAGGGATTAGAGAGTTCTACTATTTAA TTGGGAATTGTATGCATGAAAATAAACTAAGAAAAATAAGCAATTCAGATTTGGCACTCATTAGCATGTTTAATTTCAGG TTGGACTGCGTTATTTGACAGGAGATATAGTAGGGGGTAATGCTCGTTGTATTGCAATGCTAAGAGCATTTCAAGATGCC ATTAAAGACTACAGCACACCGCAAGATAAAACCCTTATCAGGGATTTAACTTCAAAAATCAATAGTTACATATCATTTTT TACTGAATGTAGACCACTTTCTATGAGCATGGGAAATGCAATTAGGTTTCTTAAGAGCCGGATTATCAATTTGCCTTTAA ATGGTTCTGAGTCTGAGGCAAAAGCAGCTCTGTGTTCTGATATAGACCGGTTCATTAATGAAAAAGTCATTTTTGCTGAT AAGGTGATTGTTGGACATGCTTTGAAAAAGGTTATGGATGGGGATGTTATTCTCACATATGGATTTTCATGTGTTGTTGA GATGATTCTTTTACAAGCCTATGATCTTGGAAAACAGTTCCGCGTTGTGGTGGTAGACTCACGGCCAAAGCTTGAAGGTC AGGCCTTACTTCATAGGCTGGTGGCTAAGGGACTGAGTTGCACATACACTCACATAAATGCTGTTTCCTATATCATGCAT GAGGTCACACGAGTTTTTCTTGGGGCTTCTGCAGTTTTGTCTAATGGAACTGTATATTCTCGGGTTGGGACTTCTTGTAT TGCAATGGTGGCTCATGCATTTCATGTTCCTGTATTGATCTGTTGCGAAGCGTATAAATTTCATGAAAGGGTGCAACTAG ATTCAATATGTTCGAATGAACTAGGTAATTTTGTTATATCAGCTTGTTAGTGTCACATTTTAAGTTTTTAACTTAATGTA TCAAGAAGGGACACTGGGATGACATTTATCAGTAACAAAGTATCGTTCTGCCAAAAACGGAGCATCTTCCTTTCAGTTCT ATTGGCTTCTAGCTCTTCTAAGCATGTTCTGAATTTCTTGCAGGTGACCCAGAAACTATTGCTAGGGTTCCAGGACGATT GGATGTCAATTATCTTGACCGTTGGACAAGTAAAGACAATTTGAGCATTTTGAATTTGATGTAAGGTTAACATATCTTTT GAGTCAACACCTTATCCTCCTATGAAAAGAAGAAAAGGTTAGCATTAATTTTAATTTTCACTGACAGGTATGATGCTACT CCTTCAGATTATATCTCTGCGATTGTTACGGATTATGGCATGGTAAGCTGATTATTGTACACTGAAACGTAGATTAATCA TAAATTTTTTTTTTGTTGAAAAGTGTGTTCCTAGCTTTGCACTTTGCTTAACTATCAGTTTTGCTATCTTTTATTTACTC TTCCTGCGGGTGTTGTTGCAGCTTCCTCCTACAAGCGTGTCTGTAATAGTACATGAATATCGCCGAGAGCACTTGTTGAT GTAGAAATTTTGTGTAGTCAGCCAGTGACACTAACATCCCTGCAATCTATTCAGATAAATGGAAGATCTATATATACTTG AATTATACTAGTTTGCAACACGAAGATTTTTTAGGCTTTCCTCCTAGTGATTTAGGAGATGTATTTACTTTCAGTAGTTC GAATGTAATTATTTATTATCTGTACACTTTAAGTCGTCTGCAAGTTTAGGGTTTATTCCATTAAGTTACCAGCACAGTAC TAACATTTGCTGTAGAATAAGTGATTAAGTGAATAACAGGTATTGATTGGATCAATGTATTGGTATATATACGATTCTGT TTCATGATTAAGAT
CDS sequence (LotjaGi4g1v0262900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTCCACCGCCACTTCCGCTCTCCGATAAATTCTCCGCCGAACGCCACGTGTCACCTGGGAGCAACAATTTCTCCTC GGATTCTTCTCCATGCTTTCGTCACGGCAGTTCCAGTTCCCCTCGCCGAGGGTTTGGTTTGTCGCCGCCGCCGCCGATTC CTCTCCAGGCTCGCATTGAGAAGAGTGAAGAGGAAGAGGTTATGCAGTCATCAAGTTCAACGCCATTGAAAGCAAAAACT ACCAAAGCTGAGAGACGAGCCTTGCAGGAAGCGCAACGAGCTGCTAAAACTGCTTCCAAAGGAGCTGGGGGAAGTAAAGA AATTGCTGAACCTGGGAATTCCCCAAGTAAAAGCACAAAGCAGTCTTCACAAAAGAAAGATGTTCCTCCCTCTCCATCTT CAGTGGCTGCTGACAAAAAGGCAGGAGAACGTCCTTTTGGGAAAGATAGGAAAAAGGATGCTGCTCCTCCTCCTCGGATG CAATTCGATGACAAAAATAGAGTGGAAAAGGCTAAAAGGAATGCACTAGTCAATCCAATCCAATCTAGAAACAGGGTTGA ATTGTTTCTGCATTTGCCTCAATATGAACGCACCACTCAGCTTTTGAACCTTGAATCAAAGTTTTTCCACCTTGATTCAG TGCATCCTACTGTGTTCCAGGTTGGACTGCGTTATTTGACAGGAGATATAGTAGGGGGTAATGCTCGTTGTATTGCAATG CTAAGAGCATTTCAAGATGCCATTAAAGACTACAGCACACCGCAAGATAAAACCCTTATCAGGGATTTAACTTCAAAAAT CAATAGTTACATATCATTTTTTACTGAATGTAGACCACTTTCTATGAGCATGGGAAATGCAATTAGGTTTCTTAAGAGCC GGATTATCAATTTGCCTTTAAATGGTTCTGAGTCTGAGGCAAAAGCAGCTCTGTGTTCTGATATAGACCGGTTCATTAAT GAAAAAGTCATTTTTGCTGATAAGGTGATTGTTGGACATGCTTTGAAAAAGGTTATGGATGGGGATGTTATTCTCACATA TGGATTTTCATGTGTTGTTGAGATGATTCTTTTACAAGCCTATGATCTTGGAAAACAGTTCCGCGTTGTGGTGGTAGACT CACGGCCAAAGCTTGAAGGTCAGGCCTTACTTCATAGGCTGGTGGCTAAGGGACTGAGTTGCACATACACTCACATAAAT GCTGTTTCCTATATCATGCATGAGGTCACACGAGTTTTTCTTGGGGCTTCTGCAGTTTTGTCTAATGGAACTGTATATTC TCGGGTTGGGACTTCTTGTATTGCAATGGTGGCTCATGCATTTCATGTTCCTGTATTGATCTGTTGCGAAGCGTATAAAT TTCATGAAAGGGTGCAACTAGATTCAATATGTTCGAATGAACTAGGTGACCCAGAAACTATTGCTAGGGTTCCAGGACGA TTGGATGTCAATTATCTTGACCGTTGGACAAGTAAAGACAATTTGAGCATTTTGAATTTGATGTATGATGCTACTCCTTC AGATTATATCTCTGCGATTGTTACGGATTATGGCATGCTTCCTCCTACAAGCGTGTCTGTAATAGTACATGAATATCGCC GAGAGCACTTGTTGATGTAG
Protein sequence (LotjaGi4g1v0262900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIPPPLPLSDKFSAERHVSPGSNNFSSDSSPCFRHGSSSSPRRGFGLSPPPPIPLQARIEKSEEEEVMQSSSSTPLKAKT TKAERRALQEAQRAAKTASKGAGGSKEIAEPGNSPSKSTKQSSQKKDVPPSPSSVAADKKAGERPFGKDRKKDAAPPPRM QFDDKNRVEKAKRNALVNPIQSRNRVELFLHLPQYERTTQLLNLESKFFHLDSVHPTVFQVGLRYLTGDIVGGNARCIAM LRAFQDAIKDYSTPQDKTLIRDLTSKINSYISFFTECRPLSMSMGNAIRFLKSRIINLPLNGSESEAKAALCSDIDRFIN EKVIFADKVIVGHALKKVMDGDVILTYGFSCVVEMILLQAYDLGKQFRVVVVDSRPKLEGQALLHRLVAKGLSCTYTHIN AVSYIMHEVTRVFLGASAVLSNGTVYSRVGTSCIAMVAHAFHVPVLICCEAYKFHERVQLDSICSNELGDPETIARVPGR LDVNYLDRWTSKDNLSILNLMYDATPSDYISAIVTDYGMLPPTSVSVIVHEYRREHLLM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 168 | 168 | - | – | |
| MobiDBLite | 16 | 44 | 29 | - | – | |
| PANTHER | 58 | 538 | 481 | 1.4E-285 | – | |
| PANTHER | 58 | 538 | 481 | 1.4E-285 | – | |
| MobiDBLite | 111 | 130 | 20 | - | – | |
| MobiDBLite | 141 | 168 | 28 | - | – | |
| SUPERFAMILY | 214 | 532 | 319 | 5.53E-89 | ||
| Pfam | 230 | 522 | 293 | 2.6E-79 | ||
| Gene3D | 333 | 533 | 201 | 1.0E-67 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cellular metabolic process | The chemical reactions and pathways by which individual cells transform chemical substances. |
Expression pattern of LotjaGi4g1v0262900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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