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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0263000 |
| Transcript ID | LotjaGi4g1v0263000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Oleosin; TAIR: AT3G18570.1 Oleosin family protein; Swiss-Prot: sp|Q96543|OLE16_BROSE Oleosin 16 kDa; TrEMBL-Plants: tr|G7JS16|G7JS16_MEDTR Oleosin; Found in the gene: LotjaGi4g1v0263000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:62581845..62583012) extracted from Lotus japonicus Gifu genome v1.2.
CTATACCCTCTTGGCCTGATCTTAGGTGACCAAAATGAAAACCTCAAACCCCCACCACGTATCCCTCTTACTTGTCACCA TAATAGCACCTTCAACCCCCACACCTGTCCCATTATCCCACATTCCCCATTTTCTAACACTTCTCTATTCTATTCTGTTT TATTCAATCAAACCTCTTAATCTCACTTTCACTCCCTCACTCACTCACTCACACTTCATTTTCATTTTCAATCTTCTACC TACCCTACCACCATGGCTGATCTTGATTTCAACCCAAGCTCAGCCTCACACCAACCCACCTCCGCCGCATTCCTCCGAAG ACTCCAACACCACGCTCCCAACTCAACCCAGCTCGCCGGCCTCCTCACCCTCATGATCACCGGCGCAATCCTACTCCTCC TCACCGGCATCACCTTCGCCGGAAGCGTCATCGCCCTGATCTTCTTCTCGCCGTTCATCGTCGTTTCCAGCCCTATTTGG GTCCCGGCTGCTACGTTCCTCTTCCTCCTCACCGCCGGGTTCTTGTCCATGTGCGGTTTCGGTATCCTCCTCGTGGCTTC GCTCTCGTGGATGTACCGTTACTTCAGAGGGCTCCACCCGCCCGGGTCGGACCGGGTCGACTACGCTCGGAGCCGGATTT ACGACACGGCGTCTCATGTGAAAGACTACGCTAGAGAATACGGTGGGTATTTGCAGAGTAAGGTGAAAGATGCTGCACCC GGTGCTTGATTTTTCTGGTCGAACCAACCGGTTCAGGTTGAGCCGGATCTGAATGTTATGGCTGTGTAATGTAGAAGCTT CCTTTATTCTTTTGTTGCTTTTTTCTTTTCTTTCTGGTGTCTGTGACTGTGTGTGTCTGAAACTATAGTGTTGGTTAATT ACTTTACTTGGTTCCTTCTTCTACCTGACACGTAGTGTTTTGTGTTTTCATTTTGACTCAGAACCAAGAATATATATATG TCCTTTGTTTTAATCACATCATTGTTTGTTAGTTATGCTGTTTTGGAAGTAGGAGGGGAAATATTAACTAATGTCTCAAA AATATTATGTATTTTTATAATATGATGTATAGTTTAAAATTCAATCTCTTTTCTAGGGAAGGGGCGATTCAGAAACCATT TAAGAGTCTAAATACATTCAGTAGTTTAATGTGTATGGGACTGAAAAT
CDS sequence (LotjaGi4g1v0263000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGATCTTGATTTCAACCCAAGCTCAGCCTCACACCAACCCACCTCCGCCGCATTCCTCCGAAGACTCCAACACCA CGCTCCCAACTCAACCCAGCTCGCCGGCCTCCTCACCCTCATGATCACCGGCGCAATCCTACTCCTCCTCACCGGCATCA CCTTCGCCGGAAGCGTCATCGCCCTGATCTTCTTCTCGCCGTTCATCGTCGTTTCCAGCCCTATTTGGGTCCCGGCTGCT ACGTTCCTCTTCCTCCTCACCGCCGGGTTCTTGTCCATGTGCGGTTTCGGTATCCTCCTCGTGGCTTCGCTCTCGTGGAT GTACCGTTACTTCAGAGGGCTCCACCCGCCCGGGTCGGACCGGGTCGACTACGCTCGGAGCCGGATTTACGACACGGCGT CTCATGTGAAAGACTACGCTAGAGAATACGGTGGGTATTTGCAGAGTAAGGTGAAAGATGCTGCACCCGGTGCTTGA
Protein sequence (LotjaGi4g1v0263000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADLDFNPSSASHQPTSAAFLRRLQHHAPNSTQLAGLLTLMITGAILLLLTGITFAGSVIALIFFSPFIVVSSPIWVPAA TFLFLLTAGFLSMCGFGILLVASLSWMYRYFRGLHPPGSDRVDYARSRIYDTASHVKDYAREYGGYLQSKVKDAAPGA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 155 | 155 | 6.4E-74 | ||
| PANTHER | 1 | 155 | 155 | 6.4E-74 | – | |
| Phobius | 1 | 36 | 36 | - | – | |
| TMHMM | 31 | 53 | 23 | - | – | |
| Pfam | 33 | 144 | 112 | 1.9E-44 | ||
| Phobius | 37 | 69 | 33 | - | – | |
| TMHMM | 55 | 77 | 23 | - | – | |
| Phobius | 70 | 74 | 5 | - | – | |
| Phobius | 75 | 102 | 28 | - | – | |
| TMHMM | 82 | 104 | 23 | - | – | |
| Phobius | 103 | 158 | 56 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Monolayer-surrounded lipid storage body | A subcellular organelle of plant cells surrounded by 'half-unit' or a monolayer membrane instead of the more usual bilayer. The storage body has a droplet of triglyceride surrounded by a monolayer of phospholipids, interacting with the triglycerides and the hydrophilic head groups facing the cytosol, and containing major protein components called oleosins. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi4g1v0263000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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