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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0263200 |
| Transcript ID | LotjaGi4g1v0263200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Clavata3/ESR (CLE) gene family member; TAIR: AT1G73965.1 CLAVATA3/ESR-RELATED 13; Swiss-Prot: sp|Q6NMF0|CLE13_ARATH CLAVATA3/ESR (CLE)-related protein 13; TrEMBL-Plants: tr|I3T3H1|I3T3H1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0263200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:62613689..62616818) extracted from Lotus japonicus Gifu genome v1.2.
ATTGGTATTAGTCACTCATTCTTGTATATCTTATTAAATTCCAAACAAATTATACCCGTACCTATGTACCCTACTAAAAA AAATTGACCTGGTCTAGTGGCCATATACCAATTATAAAATTCAAGGTTTGACAAAATGCTCTTAAATGAGCCATAGTTCC TTGAACGCAAAGGAAGCTTCATTGGAAGAAGAATGCTCAATATTTCTGCCCCCTCTCCGCATATACTGGACCTTCCAAAT CAACTCAGCCCCCCCCCCCCCCCTCTCTCTCTAATTAATTATTTCACACACATATATAATTTATAAGCTAAAGTCTCATG GAAGCAAGCACTCTCCCATGTCAAGCCTCAACATTTCTTATGTATTCTTAGCACCTTCAAGCTGTCAAAGCTTCAAAACT TTCCCTTCTCCTCCTTCTAAAACTCCATCAAATTTTCCTCCCAAAATCCTTCCTTCAATGCAATCATTCCTCTCTCTTTC TACTTTTTCTCAAACATCGTGGCCATGATCATCAAACATGTCCTTAGCTTCATTCTTTGCCTCTTCGTGTTCTTGACTCT CTTTCAAGGGTGGTTTGGCTTCAAATCTAATGATAATGTTAGCTCCTTCATCAGCAACAACAAGCATAGGAAAATCTTAG CAACAACAACTGGATTCGACTTCACGCCATTTCTCAACCGCCAGGGCCACCATCACCGGCATCACCACCACCACCGTAGT CATCACTTGCCAAAGGATCAAACAGAGGTTGATCCACGTTATGGTGTTGACAAACGCCTTGTTCCAAGCGGTCCAAACCC ATTGCACCATTAATGAGGTTCATATACTTTTTTTTTTCTTTTTTAATTCTTCATCATGATCATAATGTAATAATTAAGTT CGTCTAGTATAGTACAAAAAATATTGTTATATATATGATTCCTCTCTTCATAAACAGACAAATTATTATTGTATTTAAAT GTATACTTGATTCATCTATTTTTGTTTTTAAGTTAGAATTTTCAATTTTCAACAAATGGTTTATTTAATATCTAATAATG TGGTTCGAATTATATAGTTTGATTCTAATTACACGGACGCCAATATATGGCCTACAAAGTTTGCTTAAACGATATGCATC CATTATTATTAAGAATGAGAAGCTCATAAATTTTATGCAAATTGATTGATAGGGAAAGAAAATTACAATATTTTGTTTGA TTCAATTCGTAGTGGTTGCGACGGCACGGCACATCAAGAAAGAAGAAATTAACAAGATATCTGAAGTGGACATATTGCAA TTTAATATTGGGATTAGTTATATTGATGATAACAAATGGTCTTTGAAAATTGAAAATACTTGTGATTATGCAAGGATGTT ACCAGAAAAGGGTTGACTTTGCATAAATGAGTTATGAAGCACACATGCTCCACATAATGCTCACGTAGGTCTTTGCTGTG GATTTAGATTCTCTCATGTGTAAAAAAATTTGAGAGTGTCAAGTTTTACCATCTCACTATTAACTTTTGTGTAGATAATA AATAAAAAATAAAATAAAATAAAATTAATGGTGAGATGATGAAACTTGACACTCTCAAGTTTTTTTACACATGAGAAGAT CCAAACCCCTTTGCTGTAATTGTCTCTTTTTTCTTTTTCTTTAGTAAATATATATTTGCTTCAATCTGGGCCTCAAAACT TGTATTAAGCAACATTTTACCATCAAATTTAATTAGAATTTTCTTGCTTTGTGTTATGTTTGAGGTAAATTTAGGTTACT CTCGTAATACCTACTTATTCCATTCAAATACTGACACATGTTTCACTCATACAATAGTACTGAAAATTTACTCCACGTTG ATCACTTTGTAATTTTCTCTTTTGTGTCTTGTAATACCAACATGGGGTGGGTATAATTAGTTTGATGAAGTTTAACTACT TCATTTCCCTCCACACAATTCAATGTCAGCTCTAAAATTCAGTGGAGTGGAGGCATCCAATGAGTACTAATCCATTTGAG ATTGTGAAATGTTGGGTCTTTTTGGTTTGTTTGGTGGAGTGGTTAATTGTGGCCTCAGTTCAACGTATGTTATTGGTGCT CCTATCATGGGTAGAACTATTGCTCAGCAATTTGGTTGACTTGAAGATAGTGTGATGGAGACTCCACTTTGCTCATGGAT TTTGCACTTCTGGCCATTCTTTTTTTCTTTTTGAGGGCGTTCATTTTTTCATGAGTCATGACATTGTTGTACTGGGCTGG ACTTGGGTCACAGATGGAGGGTTTTAGGTGTTCAACTCAGCCCATTTTAACATATAGCTCCTTTTTGACAAAAAAAGAGT TAGGTCCTAAGTCAAAGCTTAACTTATATTAAAATATTGTTTATATTTATTACTTGTTTTTTGTTTAGAAAGCTTAGGAG TGTTGGATCCCTTATTGGTTGGGCTTTTAGCCCGTTTAATATCAAATGAAATGCCCACCTTTGACAAAAAAAATTAACTG GTGGATCAAATTATTAAGTTATATATATAAAAAAACTCAGTGACTTGAATAAAATTGTTAGAGTCATACATTATTGACTA GAGATATGACAAATTAAGTGCTTATAAAGGGAAAAACAACCCTCAACTCTTGAGCTAACTTTTGGGTTGAGTTACACCTC CATAATTCTAATATGGTATCAGAGCATGTCCATTTGTTGTGGAGACCTCCCATATTTGAGTCACCCGTTAATGTCCATTC CACGCTCTAGATATCCAACCTTGGGCGTGAGGGGGTGTGGAGTCTCACATTGACTAGAAATATGACCAATCAAGTGCTTA TAAAGGGTAGAGCAATGACGGATCCATGTTAAGAGCTATGAGGGCAAATGCCCTCACTTAATTTTGACAAAACTCATTAG AAAAAAATTGTGTAGTAAAAGTATGTGGTTTTAAATGATTTATTTGGTAAAAAAATGTCATCCGTTGTGTCGTACATTAC CAAATGCCCTCACTTGATAGGAAAAGTATATAGTTTTTTATGGTCCATTTGGTAAAAATGCTCTTACTTGTTCCCCATTT GGTAAAAAATATCATCACTTCTAATAGTATATGTTAATTTTTTTTATTACGAATTTACATGTATATATTGCCCCCACAAC ATTAAATTTC
CDS sequence (LotjaGi4g1v0263200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCATCAAACATGTCCTTAGCTTCATTCTTTGCCTCTTCGTGTTCTTGACTCTCTTTCAAGGGTGGTTTGGCTTCAA ATCTAATGATAATGTTAGCTCCTTCATCAGCAACAACAAGCATAGGAAAATCTTAGCAACAACAACTGGATTCGACTTCA CGCCATTTCTCAACCGCCAGGGCCACCATCACCGGCATCACCACCACCACCGTAGTCATCACTTGCCAAAGGATCAAACA GAGGTTGATCCACGTTATGGTGTTGACAAACGCCTTGTTCCAAGCGGTCCAAACCCATTGCACCATTAA
Protein sequence (LotjaGi4g1v0263200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIIKHVLSFILCLFVFLTLFQGWFGFKSNDNVSSFISNNKHRKILATTTGFDFTPFLNRQGHHHRHHHHHRSHHLPKDQT EVDPRYGVDKRLVPSGPNPLHH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 4 | 102 | 99 | 2.5E-33 | – | |
| PANTHER | 4 | 102 | 99 | 2.5E-33 | ||
| Phobius | 6 | 17 | 12 | - | – | |
| TMHMM | 7 | 26 | 20 | - | – | |
| Phobius | 18 | 22 | 5 | - | – | |
| Phobius | 23 | 102 | 80 | - | – | |
| MobiDBLite | 60 | 74 | 15 | - | – | |
| MobiDBLite | 60 | 102 | 43 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0263200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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