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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0265700 |
| Transcript ID | LotjaGi4g1v0265700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding family protein, putative; TAIR: AT5G19960.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q8R0F5|RBMX2_MOUSE RNA-binding motif protein, X-linked 2; TrEMBL-Plants: tr|I1MUC9|I1MUC9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0265700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:63052910..63058822) extracted from Lotus japonicus Gifu genome v1.2.
GGGAATTTTAAATAAGTGAATTAGAAGCAAAAACAAAACAAAACAAAACAAAAAATTGGGTTCAGACTTGAGAGAAGAGA GTAAGGATGAAAGGAGTGAAGTTCATAGTTTGAAGTGACTGAATCGATTGCGGAGAAGAAGAAGAGAAAATGACTCTGGA CGACGATAGCTCCATCTATGTTGGTGGTCTTCCCTACGACGCCTCCGAAGACACCATTCGCACTGTCTTCAATTTGTATG GCGCCATTCTTGATGTCAAGGTTCACTTTTCTTCTAACTCTTCATTTTCTTCAGTTTAGGGTTTTAACAAACTTAGGGGT TTTTCACCTGCTTATTATTGATTCAATTCCTTTCACTAATAATCAATTTAAGTCATTGGGGTTTCATTTTCATCATCAAG TTTTGTTTTTTCTTCAGATTATTAATGACCAGCGCACTAGGGGAAAATGCTATTGTTTTGTTACTTTCACGAATCCTAGG TCAGCTATTGATGCAATCAACGACATGAATGGCAGAGTATGTAATTTATCTATTTGTCATGTTTTCTGTTTCAGAGAAAA TGTGTTGATATTTGGTTATTTTTTTGGTCTGGTTAAGGATTTTTAGGCATTTGACACTGTTTTTCTGAATCAGACTATTG GTGGGCGTGTGGTTAAAGTTAATGGAGTGAAGTCCCGTGGTGGTAGATCGAATTTTGGCAGAGAACGTCAGTATTATCAT AACGACGAGAGGAATGGAGACTGGGATCGGGGCAGGGAACGAGACCGGGATTACGATCATGATAATGATAGGGATGGATA CAGGAATCGGAGCAGGGATAGGTCCCGAGACCGTGATAGGTCCCGAGACCATGACATAGACAGGGACAGGGACAGGGACA GAAGAGTTGAACATAAGCATGATTATGATCAAGATAGAGAACCTATGTTAGATGAAGATTGGAGTCGTGAGGACGATAGG GCTGAAATTGAACAAGAAAATGGAAGGGAACATGGTGGAGATGTGGATAGAGACCACAACTTGGATGCGGACAGAGAAAG GAAGATGGATAGGACCAGTGATCTTGATAGAAGTTTTGATGAGCATAGAAAAGAACAGAGTTGGCGGAACATTGAGTAAG ATCTCCACTGTCCATTTTCCTCAGTATCTGTTTACTTCCGACTATTCCTTTTTGGCTGACTTATGTTGCATGCATCTTTC TTTTGCTGGATTTCTTGTTGTCTTCCCTGTAGTTTGAATGTACCGAATCAACATAGCAGGGATCTTTCATCAGACTCAAA TGATAATCACAATGATCAGGTGATGTTATAATTTCTATATTTTGTTGTAATTTGGATCATTTGCATATTTCTTGTTCAGA TATTATAATGGCATTAATTAAACTGAAGCTGATTGTGATACTTCTTTTTTGTTTGCGTGGATTTCAGTTAGAAGATGAGT TAGAGAGGTCAACACAACAGCTTGATCAACTAAAAGAGGAGGTTTGTAGTCTCTTCAGAACTAAATGAATGAATAATGGA TATTTGATCAATGCTCTACACCACACTAGTAGGCTGCTTTATGATGGTGTGACAAATGTCTCGTCCTGAACCATTGTTAG GATGTAAAGGGGAGGAAAATTTGTTAGGTTTTTTAATAGTACGTAGGGGCTGTTCAGGGTTCTAAATTGCGAACGACATC ACTTCATGCGGCCGCAATATTGCGGTTGCAGCACCCTCCGCATCGGCATCGGACTGCAATTGCGGTGAGAATAGAATTCA CGCAAAACAGCCGTAACAAAACCACAACCCAACCGCACTGGGACAGCAATAATCCTGCAACACACCTTTCCAACCGCAAC AGGGTTCCTGTGAACGTGGATTAGGATCCTCTCAATTGTAAAAAAACTTGACCATGCCAAGTTTTATCATCTCACCTTTG ATTTAGCTATCATTTATTTCTTTAATTATTAAACACACAATAATCAATGGTGAGATGATGGAACTTGACATGGTTAAGTT TTTTTTTTTACGAGGATCCAAATTCGGACGTGGCATCTTTGTAAGCTCTCAGCTAGTATCAAAATCGATTATCCTTTCGA TCGATAAAAAGGTGGGTAACTGGGTAAGCTGTCTTGCAGCGGCGCCTCTCTGCGCTGATGTGGCCATGCGTGCTTGTCGT TGTTCGTATGGGGTATGCCGGTTTGGGGCTGGGGTAGGTTTCCCGGGTGGACTTGTAGGTTGGGTGTCGTTGTGTCGGTG CGGTGAGACGTGTCTCTGTCCTGTGGAGCTGAGGAACCGAGGACGTGGAAGAGGAATTTTTTTTCTGGGTTTGATTTGGG TCTTTTGTAATTTGGAGATTTGGGTTGGGCAAGAGAAATTAGAAAATAAGTGGAGTGTGATTGGTTGATTGATGAGTGAG AGATTAAGGAAGAGAGTTTTATGTATAGGAGATTGTTAATGGGAATTTGAAAATTAATCGTCATCAGTGTATTTGGAAGC TATATGATGTTAGAGTAGCAATGATTCACGTTAGGAGTCAGGAAATGCATTTGGAAATTTGTTGCATTTAATTTATTTCC ATTTAATTTTGGATATTGAGATCTGTTTTTCAAAACGGGGGAGGGAATATAATCTTTTTTAGGGAATGGTATCAGTTTGA GGGAATGCTCAAATGGAAAAAGAAATTGAGATAAAATTATTAGAGGGAATGGGAAAAGGTTTTGAAGAAAGAATTATAAT AATTATGCATAATAGGTATAGTCATAATTACAACAATTATTAATTTTTTTGACACGGTGTGAAATTAAAATAAATTCACG CTGCAATAACCGCAACATGCATCACGGCCGCATTCCCCACAGCTGCAACCTCGACCGCATTTTAAAACCCTGCTGTTGTA TGAGTTAGTTCGTAGTTACTAGAAGGGCATTAGTTAGATATATAAATGGAGGGATGTGAGATTGGAGAGGCATCAGTTCA GTTGTAGACTTGGGAAAGCAGAACAACGGCTTAGTTATAAGGGGAAACCCTCGGAGGAGATTTCTCTCCTAGTATTTTCA TTCAATAATGATAGAATTTTTTCATTTTCGACTCCTGGGTTCCTAACAACCATTGCATTTTCCATAGGAGCATGCGCATG CATAAAAGGCTTCCCATGATTCCCATGTTACTAAATGCTTAGTTAGGATATCACATGCTAAAAGCATTCCAACTCAACAA GTCTAGTAGTCTTTCTATTTGTTGTTTAAACCTTTGCTATGTGTTGATGGGCTGAAAATTGAAATTTCCTGGCTTGCAGG TTTGTCAATTGATGGAGGGATTGGAAGAGAAGAAACAGAATGTTTCGGAGTTACAGAAGGAATCTAAGGTATTTCTGAGC ATCGAAGTTTGAGCTTGTTTATTATATTTTTCATTGCTTGTCCGTACTTTGAACAAATAATCTGTTTTAAATTTTGACCT AGAAGATATTTACTGCAGAAACTCGAGGACGCAGTTATCACTGAGAAGAAACGCACTTCACATCGTCAGATGCAGTTGGC CAAGGTAATATATGATCGTCTTATACATTAGATTCCTGGAGTCTCTATTCTAAGTTCTAACATCAAACCCTTGAATGCTA TTGCTAACATTGGGTTTGGGAAAATGATCTTCAGCTGCATAAATATTTTCTGCAAGTGAAAGATTGCACTGAAAGACTCA AAACCAGTGAAAAAGAACTTCAGGTTTGTGTCTTAACACTGTATAATTCTGATTTATATACGACTGCAAATTATGTCCTG TATTTTGTAGAATGTTTACATTTTACAATGTGATCTCCATTCTCCAATACTTATTTCTTTCTGTTTTCTAAACAATTTCA TGTACATCCTGATGAATAAATTTTATACAATCTTATGTGACAAATCCTCAATCTATGATTCTTTTAACCTTTTCAAATTG TCGTGCTTTCTTGAAGTATTTCTGTCGGCGTGGAGCCGTGGAATCATTATATGGTACACCCGTACAATTGCACGCCAGAC ATATATTCTTAAATCTTAAGATTCATGTTCAGTCGCTTCACTTTGTTTTTACCCCTTTTATTTCTAATTTTTTATTTTTC ATGGAGGTAGCTCTGAGATTAAATTTCATATTTCTGGGTATAATTTTCTTTTCTTTTTTAAATTATAACAGTGGATATTA ACCTTTTGAAGCTAATGACATGCTAGTTATTTTTAAATAAAGTTTTTTTAGAGTCATAGAAGTACAAATGTAGAGTATAA GATAGTCGTGAACTAATTATCCCGAAAGTTTAAGCTTTTAGATAAAAGCAAGTGAATGGTTTTATATCGAACATGTCCCT TCATGTAAGAGCACTCTGTCTTAAATCATGGACAATGCATACTCACCCAACCTTATGTTGATTTAACATAGGTGCAATAA GGACCAAATCCAAGATCACTTGTTCATGGTGACTCCAATACCGTGTCCTAAGTTAATGACGCCAAAAACTGAAGTTTTTA GGTGGAAGCACATGAATGGTTTATATAATTATGTTTAACAATGTTATTCTTAGAAAGGGCAGGAAAAACAAGAAACACAT CAACTAATGCTAATGTACACCATTAATTGAACTTCGTGAAGTCACCCAAAAGAATACCCATTTTATGTTATTAATTGCAG TGGCAAAAATCTGGATAAATAAAAATCTGTATGGTGTGAAGTTGTAACTAAAATGCAGTGGCAGCTTTTAGGAAGTAAAT TCCTCGTTATCAAGGATTTTTGATCTCTGGTGTTTTCTCATCATTATTGATTTGAAAGTTCTGGTTTGTTGATGTATTCT AAGTTTATTGAATTAAGTTGCTTCTAAAATTCCATATACTTGTCTTTCTTCTCCATTACCAAATGGATTTGATGAGCTTG TGATTGTAGCATATACTAAGTAAACTTTTTTGCCTTGCAGGCTCTAATTGATACAGTAATTATTGAGAGTGATGGTGATT GTGTTGGACAACTTACAAATGGAAGCCTTGATGGTAGATAGTTGTTTATCTTCCGAGGTTCAGATTTTGTCAATGATGCT TAAAATGGGTTTGGCACATAACACATTACCTGATATGGAGAGAAAAAAAAAAAGTGCGGATATATTAACATATCTTGTAT TGTTTCCTTTTCAATTCCGCTCTCGTCTCAAGTCTCAACCAAATAGCACTAGTAAGACTCTTGTGCATATCGTTTGTCAC TTTGATTGGAAAATTGTTATTGGCAACTTGTTCTTGTAATATTGTCAATATTTAGGACCTAGTCTTAATTGTTCTCAGAA AAACCCTAATTGGCTTTCTTGCTTCCTTTGTTATGCTTCAGTTTGCATGATGTTGTTACTGTTTTGCTTGTCGTTGGAGA GTTTGGAGGGTCTTTGAGTGATAGCATTCGTTGCTAATGGGTGAGGGCTGATTCTAGAGCTGGGGAAGAAGAGCATTGTA TGTGTTTTGAGGATCTAAAGTCCTCTCATGTGAAAATTGTGTCTTTCTCATGTATGCATTAAATAGGTTGGGTGAGACCT TTTAAATGTTTATGAAGGGAGAGACTAGAGAGACACATAAAATTTAAACTGTGAGGAAATATATTAGAATTTTCACATGA CTTGATTTTAACCCATATTTGCAGGTTATTTTCATTTTAAACGACAATCGTTTCTTAATTTTATTAGTTTTACATATATG TTTAGAAAATAATTTATTTTAAGGCCCATAAGTAGTTTAATGACACATAATCATTTATTTTCAAATACCTAAAAGAATAA CAGCTCTGCTAGGTTCTTTTAAATCTTACAGAGACCCTGTGATAGAGTTCATTAGAAAGATAATATTCTCATGTTTCTGT GCCACCTGCGACTAGATCAGCCCTAGCTTTAACCTTTAACTCGGTTCAAAGGAAAAAAAAAGGTCTGTCTTGA
CDS sequence (LotjaGi4g1v0265700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTCTGGACGACGATAGCTCCATCTATGTTGGTGGTCTTCCCTACGACGCCTCCGAAGACACCATTCGCACTGTCTT CAATTTGTATGGCGCCATTCTTGATGTCAAGATTATTAATGACCAGCGCACTAGGGGAAAATGCTATTGTTTTGTTACTT TCACGAATCCTAGGTCAGCTATTGATGCAATCAACGACATGAATGGCAGAACTATTGGTGGGCGTGTGGTTAAAGTTAAT GGAGTGAAGTCCCGTGGTGGTAGATCGAATTTTGGCAGAGAACGTCAGTATTATCATAACGACGAGAGGAATGGAGACTG GGATCGGGGCAGGGAACGAGACCGGGATTACGATCATGATAATGATAGGGATGGATACAGGAATCGGAGCAGGGATAGGT CCCGAGACCGTGATAGGTCCCGAGACCATGACATAGACAGGGACAGGGACAGGGACAGAAGAGTTGAACATAAGCATGAT TATGATCAAGATAGAGAACCTATGTTAGATGAAGATTGGAGTCGTGAGGACGATAGGGCTGAAATTGAACAAGAAAATGG AAGGGAACATGGTGGAGATGTGGATAGAGACCACAACTTGGATGCGGACAGAGAAAGGAAGATGGATAGGACCAGTGATC TTGATAGAAGTTTTGATGAGCATAGAAAAGAACAGAGTTGGCGGAACATTGATTTGAATGTACCGAATCAACATAGCAGG GATCTTTCATCAGACTCAAATGATAATCACAATGATCAGTTAGAAGATGAGTTAGAGAGGTCAACACAACAGCTTGATCA ACTAAAAGAGGAGGTTTGTCAATTGATGGAGGGATTGGAAGAGAAGAAACAGAATGTTTCGGAGTTACAGAAGGAATCTA AGAAACTCGAGGACGCAGTTATCACTGAGAAGAAACGCACTTCACATCGTCAGATGCAGTTGGCCAAGCTGCATAAATAT TTTCTGCAAGTGAAAGATTGCACTGAAAGACTCAAAACCAGTGAAAAAGAACTTCAGGCTCTAATTGATACAGTAATTAT TGAGAGTGATGGTGATTGTGTTGGACAACTTACAAATGGAAGCCTTGATGGTAGATAG
Protein sequence (LotjaGi4g1v0265700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTLDDDSSIYVGGLPYDASEDTIRTVFNLYGAILDVKIINDQRTRGKCYCFVTFTNPRSAIDAINDMNGRTIGGRVVKVN GVKSRGGRSNFGRERQYYHNDERNGDWDRGRERDRDYDHDNDRDGYRNRSRDRSRDRDRSRDHDIDRDRDRDRRVEHKHD YDQDREPMLDEDWSREDDRAEIEQENGREHGGDVDRDHNLDADRERKMDRTSDLDRSFDEHRKEQSWRNIDLNVPNQHSR DLSSDSNDNHNDQLEDELERSTQQLDQLKEEVCQLMEGLEEKKQNVSELQKESKKLEDAVITEKKRTSHRQMQLAKLHKY FLQVKDCTERLKTSEKELQALIDTVIIESDGDCVGQLTNGSLDGR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 99 | 98 | 2.8E-24 | ||
| SUPERFAMILY | 4 | 111 | 108 | 1.03E-26 | ||
| ProSiteProfiles | 7 | 84 | 78 | 18.496 | ||
| SMART | 8 | 80 | 73 | 4.0E-24 | ||
| PANTHER | 8 | 197 | 190 | 6.0E-28 | – | |
| PANTHER | 8 | 197 | 190 | 6.0E-28 | – | |
| Pfam | 9 | 78 | 70 | 2.8E-21 | ||
| CDD | 9 | 80 | 72 | 4.45072E-23 | – | |
| MobiDBLite | 82 | 262 | 181 | - | – | |
| MobiDBLite | 88 | 228 | 141 | - | – | |
| MobiDBLite | 243 | 262 | 20 | - | – | |
| Coils | 251 | 306 | 56 | - | – | |
| Coils | 324 | 344 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi4g1v0265700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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