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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0265800 |
| Transcript ID | LotjaGi4g1v0265800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GDP-mannose transporter, putative; TAIR: AT5G19980.1 golgi nucleotide sugar transporter 4; Swiss-Prot: sp|Q84L08|GONS4_ARATH GDP-mannose transporter GONST4; TrEMBL-Plants: tr|A0A072V1V0|A0A072V1V0_MEDTR Nucleotide-sugar transporter; Found in the gene: LotjaGi4g1v0265800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:63070186..63072606) extracted from Lotus japonicus Gifu genome v1.2.
AATGGACATCTTATAGCAAATTAAATTATATATAATAATCATGTTCATCATTCATATACATACTTCATTTTTCTTTCTTT CTCCTCTAAAACCATAGTGCCATTAACTTGTAGCAGTAGTAGCAATCAATGAAAATGCAGTGAGGTACAAAAAAATAAAT CATTGTCCTATCTTCTTCTCACTCACTCACTCACCCACACACTCTTCACTCTCCCAGATTCCAATGTCGTCGACTCGATC GGAACCACCGTGGAAGGCGGCGGCGGCGGCGCAATCATACACAACAACCTTCCTGGTAATCGGCTACGCCCTCTGCTCCA GCCTACTCGCCATCATCAACAAATACGCCATCACCCAATTCAACTACCCAGGTCTCTTAACCGCATTGCAATACCTCACC TCCACTCTCGGCGTTTACCTTCTCGGAAAACTAGGGTTCCTCCACCACGATCCCTTCACAATCCACACCGCCAAGAAATT CTTCCCCGCCGCCATGGTTTTCTACCTCGCAATCTTCACCAACACCAATCTCCTCCGCCACGCCAACGTCGACACCTTCA TCGTCTTCAGATCTCTCACCCCTCTCCTCGTCGCACTCGCCGACACCGCTTTCCGTGCTCAGCCGTGTCCGAGCAACCTC ACCTTCATCTCCCTCGTCGTAATCCTCGCCGGCGCCGCCGGCTACGTCGCGACTGACTCCGCCTTCACGCTCACCGCGTA TTCATGGGCGTTTGCTTATCTTGTTACCATCACCACCGAGATGGTTTACATCAAGCACATGGTGATGAATCTGGGCCTCA ACACTTGGGGGTTTGTGTTCTACAACAATCTGCTATCTCTCATGATGGCTCCTTTCTTCTGGTTCCTCACCGGGGAGAAT GTTGAGGTTTTCGCTGCTTTGAGATCCGAGTCTGGTAGCTTGTTTGAGCCTGCTGCGTTTTTTGCTGTGGCATTGTCCTG TGTGTTTGGTTTGCTCATTAGTTTCTTTGGATTCGCGGCGAGGAAAGCGGTTTCCGCGACCGCGTTTACCGTCACTGGTG TGGTGAATAAGTTCCTCACGGTGGCGATTAATGTGCTTATTTGGGATAAGCATGCTTCCCCTGTTGGTTTGGTGTGTCTG TTTTTCACCATTGTTGGGGGTGTTCTGTATCAGCAGTCGGTGACTAGGCCCGGGAATGCTCCGGTGGTGGTGTCGAAGCA GGTAGATGTTGAGAATAATGGTGATGATGATGGTGATTTGGAAGGTGAGAGTGAAGAGAAGGTTAAACTTGTTCCTCCAT GAGCATTTGTTTTGTAATATTTGTATGAAGTTAGTACTTGATGTTATAAGCTGTTGTATTGCTGTATCATTGTTGTTTTG TCTCAACAACCTTAGGAAAAATTTTATGCAACATTTTAGGTATTATGTTCAGAAGGATATGAAATTGCAATGTTGGTTAC TTCCTTTCTTGATCAGGTGCTTTTCTCTGTTGTTAGTTAGTCTTGGTTTCTGTTGTTTGATTCCATAATCTCAGATTGCA TTAGAACAACAATTTTTACCTTTTCTCTTTGGGGTCCTCGAATGAAGTGTAGCCTTCAGATAGGCAAGGTTTTCAGGATA CCATGAAGGTGATTATCTGTTTCCATTTTGTAATCCCAAGAACTTACAGATGTTGTGTTAAGTTCTGGACTTCATGCTTA ATTCCAAACCTGTTTCCATTTTCCTTGTAGGCAATTTTTTTACTGTTACCATTCTGTTCATTAGGGCTTAAATTGACTCA CAAACCTGTTGGTGATCATGTAATTTCTGTCTAATTTCTGATCAGCCATTTAGCAATATTTTGCTGTTTGATGATTGTGA TTTAATCCACTTCAACTGTGGTTTCAATTCATAATTTTGCATCTTGTGATTTTCTATTATGTGATCAACCACAACTTGCT GCTGTGCTGCAATACTACAACTTCAGAGAAGAAGTACAACTAGCTGGGAAAAGGATAGTAGAGGATCTTTCTTCTTTTTT GATTGTTGAAACAAAACACAAGCATAGTCTGGTATGCCAGAACATAAGACTGGTTTAGGTTCTATATTATGAGATTTTTC TGTCTTTTGTTGTACCTAGCAGTCAATGCAAAATATATTTGGTTTCTGTTGCTGTAGAATCCTTCATAGAACAGAGTTGT TCTACCAAATACTTGCTCACTCAGTTGAAGATGTACTGCAAAACCAAAGGCTGGTGCTTTTAAATTGAGCATTTCTGTCT AGTTGTTGCTCAAAACCCCAAATGCTTTTGAATCCACGGAAAGTATGTTTGAGTAGGCAATGGCTAGTGAGTGCTCTTCT TGAACTGTGAAATTCCAATCTTAGTATCTTTTTGCATCAGTCACCATCTATTTATATAGTACATACTGGCCTGGTCTTGG AATGAAAACATTTGTAGCAAG
CDS sequence (LotjaGi4g1v0265800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGTCGACTCGATCGGAACCACCGTGGAAGGCGGCGGCGGCGGCGCAATCATACACAACAACCTTCCTGGTAATCGG CTACGCCCTCTGCTCCAGCCTACTCGCCATCATCAACAAATACGCCATCACCCAATTCAACTACCCAGGTCTCTTAACCG CATTGCAATACCTCACCTCCACTCTCGGCGTTTACCTTCTCGGAAAACTAGGGTTCCTCCACCACGATCCCTTCACAATC CACACCGCCAAGAAATTCTTCCCCGCCGCCATGGTTTTCTACCTCGCAATCTTCACCAACACCAATCTCCTCCGCCACGC CAACGTCGACACCTTCATCGTCTTCAGATCTCTCACCCCTCTCCTCGTCGCACTCGCCGACACCGCTTTCCGTGCTCAGC CGTGTCCGAGCAACCTCACCTTCATCTCCCTCGTCGTAATCCTCGCCGGCGCCGCCGGCTACGTCGCGACTGACTCCGCC TTCACGCTCACCGCGTATTCATGGGCGTTTGCTTATCTTGTTACCATCACCACCGAGATGGTTTACATCAAGCACATGGT GATGAATCTGGGCCTCAACACTTGGGGGTTTGTGTTCTACAACAATCTGCTATCTCTCATGATGGCTCCTTTCTTCTGGT TCCTCACCGGGGAGAATGTTGAGGTTTTCGCTGCTTTGAGATCCGAGTCTGGTAGCTTGTTTGAGCCTGCTGCGTTTTTT GCTGTGGCATTGTCCTGTGTGTTTGGTTTGCTCATTAGTTTCTTTGGATTCGCGGCGAGGAAAGCGGTTTCCGCGACCGC GTTTACCGTCACTGGTGTGGTGAATAAGTTCCTCACGGTGGCGATTAATGTGCTTATTTGGGATAAGCATGCTTCCCCTG TTGGTTTGGTGTGTCTGTTTTTCACCATTGTTGGGGGTGTTCTGTATCAGCAGTCGGTGACTAGGCCCGGGAATGCTCCG GTGGTGGTGTCGAAGCAGGTAGATGTTGAGAATAATGGTGATGATGATGGTGATTTGGAAGGTGAGAGTGAAGAGAAGGT TAAACTTGTTCCTCCATGA
Protein sequence (LotjaGi4g1v0265800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSTRSEPPWKAAAAAQSYTTTFLVIGYALCSSLLAIINKYAITQFNYPGLLTALQYLTSTLGVYLLGKLGFLHHDPFTI HTAKKFFPAAMVFYLAIFTNTNLLRHANVDTFIVFRSLTPLLVALADTAFRAQPCPSNLTFISLVVILAGAAGYVATDSA FTLTAYSWAFAYLVTITTEMVYIKHMVMNLGLNTWGFVFYNNLLSLMMAPFFWFLTGENVEVFAALRSESGSLFEPAAFF AVALSCVFGLLISFFGFAARKAVSATAFTVTGVVNKFLTVAINVLIWDKHASPVGLVCLFFTIVGGVLYQQSVTRPGNAP VVVSKQVDVENNGDDDGDLEGESEEKVKLVPP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | - | – | |
| TMHMM | 15 | 37 | 23 | - | – | |
| PANTHER | 16 | 335 | 320 | 1.3E-162 | – | |
| PANTHER | 16 | 335 | 320 | 1.3E-162 | ||
| Phobius | 21 | 42 | 22 | - | – | |
| Pfam | 24 | 309 | 286 | 9.0E-13 | ||
| Phobius | 43 | 53 | 11 | - | – | |
| TMHMM | 50 | 72 | 23 | - | – | |
| Phobius | 54 | 74 | 21 | - | – | |
| Phobius | 75 | 85 | 11 | - | – | |
| Phobius | 86 | 105 | 20 | - | – | |
| TMHMM | 87 | 104 | 18 | - | – | |
| Phobius | 106 | 110 | 5 | - | – | |
| Phobius | 111 | 130 | 20 | - | – | |
| Phobius | 131 | 138 | 8 | - | – | |
| TMHMM | 135 | 157 | 23 | - | – | |
| Phobius | 139 | 157 | 19 | - | – | |
| Phobius | 158 | 162 | 5 | - | – | |
| TMHMM | 161 | 183 | 23 | - | – | |
| Phobius | 163 | 183 | 21 | - | – | |
| Phobius | 184 | 194 | 11 | - | – | |
| Phobius | 195 | 216 | 22 | - | – | |
| TMHMM | 195 | 217 | 23 | - | – | |
| Phobius | 217 | 235 | 19 | - | – | |
| Phobius | 236 | 258 | 23 | - | – | |
| TMHMM | 237 | 259 | 23 | - | – | |
| Phobius | 259 | 264 | 6 | - | – | |
| TMHMM | 264 | 286 | 23 | - | – | |
| Phobius | 265 | 286 | 22 | - | – | |
| Phobius | 287 | 291 | 5 | - | – | |
| TMHMM | 290 | 309 | 20 | - | – | |
| Phobius | 292 | 309 | 18 | - | – | |
| Phobius | 310 | 352 | 43 | - | – | |
| MobiDBLite | 329 | 352 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GDP-fucose transmembrane transporter activity | Enables the transfer of a GDP-fucose from one side of a membrane to the other. GDP-fucose is a substance composed of fucose in glycosidic linkage with guanosine diphosphate. | ||
| Cellular component | Golgi apparatus | A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. | ||
| Biological process | Nucleotide-sugar transmembrane transport | The directed movement of nucleotide-sugars into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Nucleotide-sugars are any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative. |
Expression pattern of LotjaGi4g1v0265800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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