Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi4g1v0267700.1

Overview

Field Value
Gene ID LotjaGi4g1v0267700
Transcript ID LotjaGi4g1v0267700.1
Lotus japonicus genome version Gifu v1.2
Description PPPDE thiol peptidase family protein, putative; TAIR: AT4G17486.1 PPPDE putative thiol peptidase family protein; Swiss-Prot: sp|Q93VG8|PPDEX_ARATH DeSI-like protein At4g17486; TrEMBL-Plants: tr|A0A151S8K3|A0A151S8K3_CAJCA UPF0326 protein family; Found in the gene: LotjaGi4g1v0267700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:63309385..63314444) extracted from Lotus japonicus Gifu genome v1.2.

TTTGACACAAGTGTGTGATTCAATTTCAAATGATTGAACTGAAATGATGAGTTTCGCATGTGGACTCAAATTTGACCTGT CCCAAGCAAAAAACCACTTTAGCAATTAGGAAAGTAAAAGTATGTAACAAAGAAGAACCAGGATCTTCTTAACTAGTTGA CCGGAGAACCGGAGCTGAAACAAACGCTGTCGCCGCCGGTTGCGACAAAACAACCTCAAAGTTTAAGGTTCCTGTCTCTA ACTCTTCACCCTGAAACATAGATGGATCTGTATTCTGTCTTTTTTTGTTGATTTTTTTAACAAGGTTTCCCTGTTTATCC CAGAATCTATAGAGGAAATTTCAAAAAGGAAAATGGGAGTGGGGAACGGGATTTCCTCCTCAGAATGCGATGATGGCGGC AACAAAATCAGCTCTTATGTTGTGTTGAATGTCTACGATCTCACCCCTATGAATAATTACATGATTTGGTTTGGACTTGG GATCTTTCACTCCGGCATTGAAGGTAGCTTCCATCATCTGCTCTCTCTCATCATTTTTCCATTGCTTCAACATTTTTAAC TTCATTGATCTGATCTTTGTAGAGGGTTTTTTTGTTTGCCCATTTCAGCTTAGCTTTTTGTTTCATCTTTATTACTTTAT ATGTATTCCTGTGAGTGAAAGTTTGCAACTTTTCTCTGACAAGGGGGTGAGAGTGAGATACATTACTGACTAGTGACTAG TGCTTGATTCCAAACTAGAACATAGAAGCAAAAAAATGCAACTTTTTAGTTTGTTGCTGATTAGGTTCATATATCATAGA GCAAACTGTGTAAAGAGGGGAAATTGGCATGCCGATTCAATGAACATAAACTATGCAAGCTAAATTACAAAGGCATTACA TTTCAAATCACTTGGGATAGTTTGGAGGTGAGAAGGTGACACTGTTATTTGTAGTCCTGCATCCTCTCTCCTAGTTAACA TCGGATAGTGGTGAGCCTTGATAGGGCTACACTGTAGCGCCGCGATATCCGTGATTTGACAACAATGGGGTGGGGCCAGT GTTTCAATCTCAGATAGCAAAGCATAGCGGTTAATCTCCAAAGTGCTTTTGTACAATAGCGCATAGAGGGATGACCGCTG TAGGAATCAGCATCCTCTTCTGGATCCAAGTCTTCCACTTTCTTTTTTTTTTTCTTTACTTTCTTCCTCTTTATTACTTT CACTACAATCACAGCTTGGTTGCTAGTTGATCAGCTCGGGCATAGAAAGGAAGAAAGGCGCAACGGAGTGAGAGTTTTCT AAAACCAGACCCTTTTTAGCATGTTTTTAAGCAAAATCCCTAAAATACTACATCAAAGATTCCCTAACCTTAAACTTCCA GATGTCTACTCCCACTGAATAGCAGCTAGATAGCACCGTGGCAGCCGCTAGTTCCTCTGCTTTAGTGGCCTGACACTAAA CTGTGATGCTATGCAGCAATTTCAAGCAGCAAGAACCCGCTAAGCACCGCGACGGCGCTATCGCATCTTTATGGTGCGCT ATTGACAACTGGGGTGGTGCTATTGGTATATTCAGAAAGCCTCCAGTCTGCTGGAGCTCTTTTAATGCTGAGAATCCCAT TTTCAGCAGCTGTCCATCAGCTCTGTTCACAGTCCTCTTAAAATATTTCCCCTGTCAAACTTCTTGCTCTCGGATCTGAC ATCTATATTTTGCGATCTTCATGTTTGGCTCCGAAGTACGTCACTTATGGAAGTATTTTAACTATATATAATCCAATATA CATAACATTGGTAGGTTGGTTAAAAGCATTATATCACAATAAAAGCTACAATCTCAATGTCAAGTGTATGCTGATCTACT TCTTCAGTTGCAACATAAGCACCTAGTTATTGTCAAAATCATATAACATATTTGACACCTTGGAGTTTTTCAAAAGTGAA GCTTTAAGGAGATGTTATGTGTAGTGTGTCTGAATGAGATGTTCGGGTGTCTAAAATTGATTTTCCTGGTTGATTGAGAA TCTTATGTTCGATAAAAAAAATGAAAATGGTCATATTTAAACTTACTGAATTTTATCCATTTGATATACTTCTTCTTTAC AGCTCTTGAATTTTCTGAGTAAGCATGATATTTTTTGTATGATTATTTGGTCATAACTGTTCTGCATATGCTATCACTCA AGAAAATCTGTTACTTTTATGCTGAGGTGTTCTCTTTTGCCGTTACTGCATTCCAATGCTTGTTGCTATTGCTACTGTGG GGAAGCTTATTCTCTTTCTTTCTTTCTTACTTTTATTCACAAATAGTGCATGGTAAGGAGTATGGATTTGGAGCCCATGA TTTCCCAGCTAGTGGAGTTTTTGAAGTGGAGCCAAGGATGTGCCCTGGATTCATTTATAGACGTTCCATCACTTTGGGCC AAACAAACATGAACCCTTCGGAGTTTCGGGGATTTATTGAAAACATGGCTTCTGAGTATCATGGGGATACTTATCACCTT ATATCCAAGAATTGCAATCATTTCACAGATGATGTCTCATATAGATTGACCGGAAAAAAAATTCCAGGTTGGGTGAATCG GCTTGCTAACCTAGGTAAGACTGTAAAAGAAAAATCTCTTGTAAGCTTTTTATTTTACACCTCTGTATCTATATGCACTC CATATTTATCTTCTGAATTTTTTCATGCTTTCATCTTTGGTCTCCATCTATTTATCAAGTGAGAGACACATCTAATATTA ATGACCTGTCTAGCAAACCTGTTGGTCCATAAAGCTTACGGTTATTATAGGACAATTCTTTCCTCTGCGAGAGAGGCTTG AAACGCGGCTTGAAGAATAATGGCCAGGTGCTGGATCGGTGCGTTGATGTTGGTGATCTTGATCCTGATGCGATTCCATG GGTGCGGCAAGGATTTTGCAATTTCCTATTCTAATTTTTCATCGAGAGAAACGGATATCGTGAAATCTTGACCGGACTCA GCGGAATCGACACCATGGCTTTTTCACATTGATCCCTTCTTTGATTGCGAAGGTGGGAAAGGTTTTACCTATCCCGCACG GACGACGCCAATGTTCATGTGAGGTGAACAAGACTGGATCTAGAGCTTCCAAGGAGAGAGTCCTAAACCTAGCCATTTCA TTATGAAGATGAACTTGCATAATACAATAAATCATCCTCCTTTTATTGAGGTTCTTAGCCTAAATACATAGATTTGGGCC TTGGTGCTAAATGGCGCACACAAACATAATCTGCCCAAAAAGGGGGGCGAGGTCGCCTAAGCCTATAAAGCACATAAATC GCCGACATGGCATAAATAATACATGAATCGCCAGCATGGCGTGAGAAATACCTTGCCATGGCGTAATGGTGTGAGACCGC CCATATATGGAAGAGATCGCCCATAGGAGATTAAGGAGTCATGACTGATGGCTTGCCATAGATGGCTCGTTAGATAGAGA CTCGCTTGCCATGTAGCATGGTCGCACGCAAGGTAGTACTATAGTCGCCCAAGAGTGGTCAGATCACTCCTGACCTGTTC CCAAGTTCACAAGACACCAAGCCTGAAGCATGAAGGCAAAGTGTGTCTTTGAACTGGGTCACCTTGATTCGCTTCCTCAA GGACCAGCTTGCCATCTACCAGTCAAGTAAGGAAAAAAAACTTTCTATAGAAAAATTAATTCATGGCCTACTATGTATCA CAAATATAGAACTTCAATTTTTTGTAGCTGTGTGATATTTCAATTGGGTTTGAGTAAATAGTCGAAAATAGAATCTGATG ATGATATCATGTTTTGGTGATGTTTAAAGTCTGTTCAATCTGCTTTCTTCAGGTTATGTTCTCTCAAATAAATTACTTTC TCTGAAAAGATGAAATTTCAGTTGTTTTTGAGAGAATAACACCATTTCTAGTTTCATGATCGTATGAAAATAATATCATT ATGGGTGATAAATCTAATCCAATGCATTCATTGCTCTCTTTTAGGTTCCTTCTAAACTTTTTGGCCGCATATCTTTCTAT TCCTGCAGATTACAAGGGCATAATTTTTTAAAAGCACATTGAAAATAATCCTAACTTCAGCCTTTTGGTCAAAATATCAG GTGCTTTGTGCAGCTGTCTACTTCCTGAAAGCCTTCAAGTAACAAATGTTAAACAGCTACCCGAATACCATGAATGCTCC GGTGGGTATACGTTCCCGTTCCCTGTCTTTTTAACATTATGTATCCTGATGCATAAATTTTTTCCATCTTGTCTTGTTAA TATATGTAACCTTCTGTGCTGCCTTTTTTGGGGACTGTTTGCAGAAGATGAATTTGTCGATTCTCTTTCATCTGCCACAC CCAATGAGTCACCTGATAGAGATGATGAGCAAGAAAGGAACCTTTTGTTGCTAACGTCTGGAGCTGTGGATGTTACTTTC GTTAAAGAGGCCCGTGTAAAGTGATAATTATGTGTTCAAGGTGAGAAAATGATGCAGGCTGTCTTCGTTTGAATACCTGT CCAGTTGATCAGCAGTGATTCTTTTCCCATTCTTCTATAGCTGTCTGCATTGTCTTTGATTCATTCGTCGTAACTGAAGT ATCCAAACTAAATTCAGCGCTTTGTTGTTTTGTTTATAGAGTCTAGTGCATGGGGGTTGCAGGCTGTCATGTAAAATTGT AAATGGCATTTACAGTCTGTAAATTGTCTAAGTTATGAAATACTGTGTAGAATTGTCTATGTTTGTTTTGAGAGATTTAT GTCCAAAAATGACCTTAGGAACTCCAAGGACAGTTTGTTTTATGATTTCCTGGTGAAAGATAGTCTCAACAAACGAATTG GTGAATGTCAAGTTTCAACATAGTAGTATCTAAGAATTGCTCGTGGATATAAAATGAAGGGTTTGATTACTTAAAGTCAA TCTAGATTAGTTTATAATGATAGTGGCTGTAGTAGTAGGAATAAAAAATTATCTGAAAATACAGTAGTTACAGATTTTTT CTTAAAAAAATTAACTATAGTGAAGTGATATGCAAATTTCATTTTTAAATATAATATATGATCGTTTGTTAGTGAACTAA ATTGACACTATTCTATTACC
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0267700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGAGTGGGGAACGGGATTTCCTCCTCAGAATGCGATGATGGCGGCAACAAAATCAGCTCTTATGTTGTGTTGAATGT CTACGATCTCACCCCTATGAATAATTACATGATTTGGTTTGGACTTGGGATCTTTCACTCCGGCATTGAAGTGCATGGTA AGGAGTATGGATTTGGAGCCCATGATTTCCCAGCTAGTGGAGTTTTTGAAGTGGAGCCAAGGATGTGCCCTGGATTCATT TATAGACGTTCCATCACTTTGGGCCAAACAAACATGAACCCTTCGGAGTTTCGGGGATTTATTGAAAACATGGCTTCTGA GTATCATGGGGATACTTATCACCTTATATCCAAGAATTGCAATCATTTCACAGATGATGTCTCATATAGATTGACCGGAA AAAAAATTCCAGGTTGGGTGAATCGGCTTGCTAACCTAGGTGCTTTGTGCAGCTGTCTACTTCCTGAAAGCCTTCAAGTA ACAAATGTTAAACAGCTACCCGAATACCATGAATGCTCCGAAGATGAATTTGTCGATTCTCTTTCATCTGCCACACCCAA TGAGTCACCTGATAGAGATGATGAGCAAGAAAGGAACCTTTTGTTGCTAACGTCTGGAGCTGTGGATGTTACTTTCGTTA AAGAGGCCCGTGTAAAGTGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0267700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGVGNGISSSECDDGGNKISSYVVLNVYDLTPMNNYMIWFGLGIFHSGIEVHGKEYGFGAHDFPASGVFEVEPRMCPGFI YRRSITLGQTNMNPSEFRGFIENMASEYHGDTYHLISKNCNHFTDDVSYRLTGKKIPGWVNRLANLGALCSCLLPESLQV TNVKQLPEYHECSEDEFVDSLSSATPNESPDRDDEQERNLLLLTSGAVDVTFVKEARVK
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12378:SF45
10 219 210 2.4E-126 –
PANTHER
PTHR12378
10 219 210 2.4E-126
IPR008580
Gene3D
G3DSA:3.90.1720.30
17 168 152 4.0E-36
IPR042266
ProSiteProfiles
PS51858
21 158 138 58.196 –
SMART
SM01179
21 159 139 1.2E-56
IPR008580
Pfam
PF05903
23 156 134 3.8E-45
IPR008580

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0267700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…