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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0268300 |
| Transcript ID | LotjaGi4g1v0268300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Early nodulin-93; TAIR: AT5G25940.1 early nodulin-like protein; Swiss-Prot: sp|Q02921|NO93_SOYBN Early nodulin-93; TrEMBL-Plants: tr|I3SX92|I3SX92_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0268300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:63394600..63398652) extracted from Lotus japonicus Gifu genome v1.2.
ATCTCTGATGTATGCCACAGGATTTTTGTATGTCAATCTATCATTACCCGACTAATCAACCCAATACTCACCCACCCCAC ATTAATCCACGGTATTATGATGTTGACTCCCAATCTACCATGATGTTTTATATGCTTCCCTTTTATATATTCACATGTTC ACATGGATTATGTTTTGTCCAAACTTTTGGTTATTGGGATGACAGGTACGTCAGTGGCTAATGCCCATTGTTTTTAGCCA CTTTGGACTAAACAAAACTACTAACTTTTACAGTACAGTTGCCACTGCCAAAAAGTTGAAGGAGCTTTTCTTTTACTCTC CAAAATGTAGCAAGTAAACATTGTGATACAGGATTATGGACTTCTGTGTCAGTTTTGAGACACCAGTGGATAACAAAAAG TCCCTTCCTACATTATAATATAGGAAACGGCACATTAGCATCTCCAAGTGCCAAATCAGATGGTGCATTATGCAGCTAAA GTCCCTCACGTGCCCTTTGCATAAAACTAGTAATTTTTTTCACAACCCTTGGGGAATAAAGTAGCTGTAATTAGGCAGCA GCAAAAGAATCCACCCACCGCACTAAGTGAAAACAACTGCCTCAGACGGTGGATTTCATCTGAAACCATCAAACTCCGGA GCTACCTCTTGGGAATTTCTTGTTGTTGTTAATAATCCTACCTTGTGATGAGCAACACAGTATAAATATACCAGCAACTT CAGCCATATACTTCATCCAAAGCAACTCCAATTATTCATCTGTTTACTAAGTCTTCTTCCTTATTAGTTTCTGTTCAATT AAAATCTTTGAAGATGGCTAAGAGAAATGTTAGTGCTAATTATCCTCTTGAGAGGACTAGCTTGCCTTCTCTGGATCAGA GGTTGGCCATAGCCAAGCGTTGTTCCCATGGTAATGTCTTCTTTTATTTCTTGACTGATTTGGAAAATCCTGTAAGCTTA GGACCATATATCTGGTTTCAGAATTATATTCGTTGCTGTAGTTTGCAAATTTCCCAACATCTTTTTACCTGATATTGATT TACATTTTTCATTCTGTGTATAAACAGAGGGTGTGATGGCAGGAGCTAGGGCAGCTGTTGTTGCTAGTATTGCCACTGCT ATTCCAACAGTAAGTTCTCCTTCCACCTATTCAAATTTCTCTGCTCCATTCAATCACTACTAAAATGTTCACTTGATCAG TTTACATTCAATCAGCATATAGCTAACTGGAAACTGGGTTTGATATGCAGCTAACAAGTGTAAGGATGTTACCCTGGGCA AGAGCCAACCTCAATCACACTGCTCAAGCTCTCCTAATTTCCACAGGTTAGCTTACTCATCCATGGAGTTGTGTTGATCT CCTCATAATCATTACAGCCATTGTTTGATTTAGTTATCTAACTACCATATTATGTTTGCAGTGGCAGGAGCAGCATATTT CATTGTAGCTGACAAGACTGTTTTGGCAACTGCAAGAAAGAACTCCTTCAAACCACCTTCTAATGCATGAATTCCAAAAA GCTAACTTTGGATGTTGGATTATGCAGCACCAAATTGAACTATCTTAGCTTTAACCCAATTTCGTGAACTCAGCACATAT GTATTGATAAATAAGGATTTACATTCCAATAGTGAAAGAGCTCATATGTACCGATCACCATTAATTATATGAATGTAAGT CATTCACTTTTCTTTCTGCACAAGTGCACATGATAATCCATGAACAGATAGACTAAGTTTCACCAGCAGTCGTTACATGA GCAAACCCCATCTTTAAAATGGTGAAAACGGTTTCTATCTCTGGCAATTATTTCCCTATTGAAGATCTTGGATAATAGCT TGGTAGCTGAATGGCAGTTTCCACAAACACGAAGATTCTTTACAATCCTAATCTTAGTCCCCGGCTCTGAGCTTATCAAA CCGAAAGCAATAGCCAACTTCTCACTGTGTTGACTCAAAGCCCCTTCCTTCCACTCTTCATCCATGTCATAAAGTACCTC AGAAGTATCAGGCACAAACCCATTCTCCTTCAAAAGCCTATCCACCTCATTCAACATTGTATAAATATTTTTACTCTGAG GGTGGAGCTTATCTCCAACAAGGAACTCATGAACAACACCATCAATCTCTATAGAGGTGCAACCAGGAACTTTCTTCATT CCTTTGTCATTTAACTTGGTTCTTATCCTTGCTGCATCATCCCATCTTCCAGCTCTTGCATATATGTTTGACAATAGCAC GAATGCCCCAGGATTTTCCGGCTCTAACTGAAATAGGCGTTCTGCAACATATTCACCCAACTCAACATCTCCATGATCCC TACAAGCACTGAGCAGAGAACCCCAAATAGCTCCATCAGGCTCCATTTCCATATTTCTCATTAGAATCTTGGCTTCATCG AATTTCCCAGCTCTAGCCAGGAGATCGATCATGCAACCATAGTGTTGCAATTTTGGAGAAATTCTGTAATCTTGAATCAT TGACTTGAAATACTGGTCTCCAAGATCTACCAAACCAGCTTGTGTACAAGCAGATAATACCCCAACAAATGTTATCTCAT CAGGCTGAAACCCCTCCTTTGCCATTTCTGAGAAAAGCCCCAGAGCCCTCTCTGCATGTCCATGCATAGCCAATCCTGAT ATCATCGCATTCCATGAAGCCAAACTTCTACAATGCATACTCCTAAACACTTGTTCCGCCGCCTCAATACAGCCACACTT TGCATACATGTCGATGAGACTTGTCCAAAGAGAAGCACTGCTCGTGCTCTTCAAATTTTTATCTATGTAGGCATGAACCC ACTTGCCAAGGTCAAGAGCACCAAGGGAAGCGCAAGCCGGAAGAATTCCCAAGAAGGTCACATCGTTAGGCCTCACGTTT GATCTGAGCATGAGCTCAAAGAGCGCCAATGCTTCCTGGTAGAAACCCAAGCAAGAATAACCACCAATCATAGTATTCCA CGAAATCACATCTTTTTCCTCCAACTCTATTCCATCAAACAATTCACGAGCCGCGTCAATTTCACCACACTTAGCATACA TATCAATGAGTGCATTGCTAAGCTGAAGATTGGAACCATGCCGGTGTTCTCTTATCCAAGAACTGATCCAGTTACCGAAT TCAAGCAATCCTAAATTACCACAAGCAGAGAGCAGACTCACCATTGTACCTTCATTGGGCGAGATGTTTTCCTCCTCCTG CATTTGGCGAAAGCAATCCAATGCTTCTTGAAAGCGACCACTCTGAACATACCCAGCAATCATGGCATTCCAGGACACCA CATCTTTGTCAGGAATTTCATCAAAAAGTCCCCGAGCATCATCCACATAACCCATTGAGACATACCCAGTTACAAGAACC GTAAAAGACACAGCATCTCTCAGAGAACTTTTATCAAACACCAACCGTGCAAGTTCCAATTCACCTACAGAAGCATACAT ATGAATAATAGAAGTATGCACATGCGGATGAGAGTGAAGAGCAAGCTTGATAGCATGCGCATGGAGCTGTTTCCCTTCAT GGGCAGCCCTGGAATCAACACAAGACTTGAATAGAAAAGGAAAAGTATGAGAATTGGGTTGTAGACCATAGCAGAGCATG CGAATGTAGAAATGCAGAGATGAGATAGGGAAGGAGCTGAGAGCGTGGCCGCGAATGAGAGTATTCCAGATGAAGTGGTT GAGAGGCGGTTGCTGTTTTCCGGCGACGGAGACGGCGTAGGAGAGGTCGCCGGAGGGTGAAACGGCGCAGAAGTGGATGA GTTTGCTTTGGGCGAAGACGGTGTTATGGAGACCGGTTTTGATGAAGAGAGTGTGGATTTGCTTGAGGGTGTGGATGTTG TTGCATTTGGTGAGGAGGTTCATGAAAGGGTGGTCTTCGATGAGTTTGTAGGGAGGGTCGGAGCTGGGAGGAAAGTGGAG AATGGAAGGTGACACTGCCATAGTACTGTGTCTGTTTGTTTTGTTTCGTGGTGGTTACCGCCCCCGGAGCAATAAAGGAT AGGCTTAAATATTTTTTTGGTCCTTCGAATATAGAAAGTGTTGTTTTAGTCCC
CDS sequence (LotjaGi4g1v0268300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTAAGAGAAATGTTAGTGCTAATTATCCTCTTGAGAGGACTAGCTTGCCTTCTCTGGATCAGAGGTTGGCCATAGC CAAGCGTTGTTCCCATGAGGGTGTGATGGCAGGAGCTAGGGCAGCTGTTGTTGCTAGTATTGCCACTGCTATTCCAACAC TAACAAGTGTAAGGATGTTACCCTGGGCAAGAGCCAACCTCAATCACACTGCTCAAGCTCTCCTAATTTCCACAGTGGCA GGAGCAGCATATTTCATTGTAGCTGACAAGACTGTTTTGGCAACTGCAAGAAAGAACTCCTTCAAACCACCTTCTAATGC ATGA
Protein sequence (LotjaGi4g1v0268300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKRNVSANYPLERTSLPSLDQRLAIAKRCSHEGVMAGARAAVVASIATAIPTLTSVRMLPWARANLNHTAQALLISTVA GAAYFIVADKTVLATARKNSFKPPSNA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 36 | 36 | - | – | |
| PANTHER | 15 | 103 | 89 | 5.9E-46 | ||
| PANTHER | 15 | 103 | 89 | 5.9E-46 | – | |
| Pfam | 23 | 100 | 78 | 2.8E-37 | ||
| Phobius | 37 | 57 | 21 | - | – | |
| TMHMM | 37 | 59 | 23 | - | – | |
| Phobius | 58 | 68 | 11 | - | – | |
| TMHMM | 69 | 88 | 20 | - | – | |
| Phobius | 69 | 88 | 20 | - | – | |
| Phobius | 89 | 107 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0268300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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