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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0268400 |
| Transcript ID | LotjaGi4g1v0268400.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger (Ran-binding) family protein; TAIR: AT2G26695.1 Ran BP2/NZF zinc finger-like superfamily protein; Swiss-Prot: sp|O13801|YE04_SCHPO Uncharacterized RNA-binding protein C17H9.04c; TrEMBL-Plants: tr|I3T8Y2|I3T8Y2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0268400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:63408337..63409775) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGCTGGTCTGGAGGAGATTGGATGTGTGGTGCTTGCCAGCACGTAAATTTCAAGAAGAGGGAACAATGCCAAAGTTG TGCATACCCCAAATATGGAGGCCCTGACCCAGCAACCTACAGATACAACAGGACTGAAACTTTGGCAGGGGACTGGTATT GCTCCGCTATGAACTGTGGAGCTCACAACTATGCAAGCAGATCAAACTGCTATAGATGTGGTACAATGAGGGATGATTAT TCTTCTGGATATGGGGGGAACATGGCAGGCTCTGGAGGATATGGATCTGATTGCAGTTTCCCACCTGGATGGAAGAGTGG AGATTGGATTTGCCCTAGGTCAGTTCACATTGTCTTCTTATATTTTGAGCACTGAAATAGTAATCTATTCAGGAAGAGTA ATGATATGTATACATACTGAAATCGTCGACATCCTCCTGACATATGAAAATACTTGTGGACGTTAAAAACCACCACTAAC ACACGTCGCTTGAGTGTCACACTATTTATGTATGTTTACATATCATTATTGATTCAGGAAATTGATGCTCTGAAGTGAGG ATGAGATCTTCCGTCCTCATTTGGTGTCCCTTCATTGTCCCACCAATCAAATTGCGCCATGTAGGCATGAGTTTTACAAT TATAACCTTACATGAGTGGTTTTTAAAAAACATGACACAATTTGATTGGTGGAACATGGAAGAGGACAGCAAATGAGAAC AGAGGATTTCAACCTCTAAATTGAGGATGAAAGAGTTATAACTTATAACCATTAACTAAAAAAAAATTATACTTGAGATT TTAAATACGTATAGTTTATTATCATATTGTGCATGTGTTTTATCTCAAGCTCAACCCTCTAAAGCGTTATTCTCTCTGCA TTTGTTCAATAAAGAGCATTCAATTGCAACTTGAAAGACAGATTATATAGCCTAGATGTCCACTGTCATAAATGCTGAAT AATGTAATTTATGCATCAAGAAAAGCTGCATTTTCATGCATTGAAGGCTCCATCTCCTTTTCTTCCTCCTAGATAAGGAG AGGTTACACTCAGCCCTTGGATATTGGCATAGAGTGACAATAAGAATAAAAGATGCAGTACTTTTCCAAGCCAAAATAGC TCAGTTAATTTTATTACTCACAATGATACAAATACATGTATCAAATTTCTTCCTGATTTAATTATTTCACCTTTGTATTT CTTTATGTTACGTAACAGAATTGGCTGTGGAGTGCATAATTATGCTAGCAGGGCAGAATGCTTCAAGTGCAAAATGCCAA GGGACTTTGGTAAGAAAAGTTTAGTCTTCTTACATTTTTCATCCGTTCTTTTTTGGAAAATATTGTCAAGATGTTTTTCA GAAAAGAAAAGATGCTATTTAATTTAACCTCATTTTCAATGATAGATTTACTTCTTCCTTTTCAGGTGGGGAAGATTGA
CDS sequence (LotjaGi4g1v0268400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCTGGTCTGGAGGAGATTGGATGTGTGGTGCTTGCCAGCACGTAAATTTCAAGAAGAGGGAACAATGCCAAAGTTG TGCATACCCCAAATATGGAGGCCCTGACCCAGCAACCTACAGATACAACAGGACTGAAACTTTGGCAGGGGACTGGTATT GCTCCGCTATGAACTGTGGAGCTCACAACTATGCAAGCAGATCAAACTGCTATAGATGTGGTACAATGAGGGATGATTAT TCTTCTGGATATGGGGGGAACATGGCAGGCTCTGGAGGATATGGATCTGATTGCAGTTTCCCACCTGGATGGAAGAGTGG AGATTGGATTTGCCCTAGAATTGGCTGTGGAGTGCATAATTATGCTAGCAGGGCAGAATGCTTCAAGTGCAAAATGCCAA GGGACTTTGGTAAGAAAAGTGGGGAAGATTGA
Protein sequence (LotjaGi4g1v0268400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSWSGGDWMCGACQHVNFKKREQCQSCAYPKYGGPDPATYRYNRTETLAGDWYCSAMNCGAHNYASRSNCYRCGTMRDDY SSGYGGNMAGSGGYGSDCSFPPGWKSGDWICPRIGCGVHNYASRAECFKCKMPRDFGKKSGED
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 35 | 35 | 7.6E-10 | – | |
| PANTHER | 2 | 139 | 138 | 1.7E-72 | – | |
| PANTHER | 2 | 139 | 138 | 1.7E-72 | – | |
| SUPERFAMILY | 3 | 34 | 32 | 6.8E-8 | ||
| ProSiteProfiles | 4 | 33 | 30 | 8.773 | ||
| SMART | 6 | 30 | 25 | 1.5E-4 | ||
| ProSitePatterns | 8 | 27 | 20 | - | ||
| Gene3D | 41 | 80 | 40 | 6.3E-12 | – | |
| SUPERFAMILY | 45 | 79 | 35 | 4.45E-10 | ||
| ProSiteProfiles | 48 | 79 | 32 | 9.427 | ||
| Pfam | 49 | 76 | 28 | 4.8E-5 | ||
| SMART | 50 | 76 | 27 | 5.4E-6 | ||
| ProSitePatterns | 52 | 73 | 22 | - | ||
| Gene3D | 99 | 137 | 39 | 6.9E-13 | – | |
| SUPERFAMILY | 102 | 136 | 35 | 5.26E-10 | ||
| ProSiteProfiles | 105 | 136 | 32 | 9.755 | ||
| Pfam | 105 | 133 | 29 | 1.9E-7 | ||
| SMART | 107 | 133 | 27 | 1.7E-7 | ||
| ProSitePatterns | 109 | 130 | 22 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0268400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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