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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0269500 |
| Transcript ID | LotjaGi4g1v0269500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA polymerase II transcription mediator; TAIR: AT5G20170.1 RNA polymerase II transcription mediator; Swiss-Prot: sp|F4K460|MED17_ARATH Mediator of RNA polymerase II transcription subunit 17; TrEMBL-Plants: tr|K7KNJ6|K7KNJ6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0269500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:63478202..63483973) extracted from Lotus japonicus Gifu genome v1.2.
CTTAATTTTAAAAAAATATAAGAATTGAGTTTATAGAGTGGGTTGTCTCTTTCCCTCAGACATCAAGGAACTGTTGTTCC TCCGAGTCCGACGATGGACGACGCCATGTCATTGCAGCTCTCACTCGACAAGCTCCCAATCAAGCGTTTGGAGTCTATCG AAGAAAACGGATTCGAACGATTCCCTTCGTAAACTCAGACTCACTCTCTCTTTCTTCTTCTAAATTTCTCAAAACCACTC TTTGGAATTTGAACCCTAATTTCACATTGCAGTGATGTTGATAACGAAGAGAAGCGACTCTCGTTGATCAGGCGAATTGA CTTCGCTTGGGCCGTTGAGAAGGATGAGGAGAGGAAGAAGCAGAAGAAGAGCTCAAAGGAGCCCTCAACACCATGGCAAT GGCAGGGCATGATCGAGAATTTGCAGTTGGCTCATCAGGAGCTTTCTGTCATCATAGATCTCATCAACACTGTGAGTACT TCAATTTATGTTGCTTTTTTGATTTTGCCTGCATTTTAGGAAGAAACCCTAGTGAGAAGTTTAGTTTGTTTATGTGAATA TCTGTTTGTAATGATGAAAGAGATTTGGTTGAGGCTATTTGGTTTTTTATGTCTACTAAATTATCCATTTGGAACATGCT TTGGAGGGAAAAGTTTGTATGTAGATTACATAAATTAACTAGTGTCATTCAGCCCAGAATGAAATTAAGGGTTGTTAGTT ATGAAGCATGGGTTTGCTGCCACACAAATTGGGTAGGAGTATGCGTTGGTACGTACCAAAACAATTAATTTTTTTTGGGT ATGGGTACTTATGACTATGCTTGATTATTATCAATTATTAAACCCTATATGTCAATACTACCTGCCCTTTGCCTTCTCTT TAACCGATTGTCCTTGGCCCATCATTTGTCCGTTTGCCGCACATAATCACTGCCTTACAATGCCAGAGTAACTAATGACC ATCACTAGAGTCTTAAATTGTGGTCTGCAACATTAAATGCGCAGTAATATTGAGGTTGCAAGCGGCGCCGCTTCCGCAAA GCGCCGCAATTGTGGTGTGAATCAAATTCACCTGTTTCTCCCGTAACTAATCCGTTTTTCTACCGCAACAGTGTTGTTTT TACCCCGCAACAGAACGAATCAGCTGCAATAGTGTTTCCAGTGGCGATCGGTATCTGAAACCTTGATCGAATTTGCTGTC CTTTCCTGAATTCTTGCTTGCATGCAGATCCTCCAACGGTGGCGAGATCTGTTTCTGGTCTGGGCATCTGGCTGATCCGG ACTTCTGGATGATCTGGTGGCTAGTGGAGACTGGAGACGGGGTCATCGCGCCCCTGTTGCGATGCTGGTGCATGTGAGCG ATGAAGTAGATAGAGATGAGGAGGGTGAGTGAGGGTTTGTTTGTGATTTGGGAGAGGTGAAGAAGAGCTAGTCATAGAGA GGCAGAGGCTATTTGTGTGGGTTTTAATTGATTGAATGTTTGGACTTTGGGGGAAAGATCAAAGAATTTAAAAACTGATC CCAAAGAGAATGTGTAGATCAAAGAATTTAATTGATTGAATGTTTGGACTTTGCGGTGTGAATCAAATTCACCCGTTTCT CCCGCAACGAAACCATTTTTCTACCGCAAGAGTGCCGTTTTTACCCCGCAACAGAATGAATCAGCCGCAACAGCGTTTCC GGTGGCGATCGGTCTCTGAAACCTTGATCGAATTTTATGTCCTTTCCTGAATTCTCTGTTTCTGATCTGGGGGTCTGGCT GATCTGGACGTCTGGATGATCTAGTGGCTGGTGGAGAAGCAGTCGTTGCGTCCCTGTTGCGGAGCTGGACGGTGAAGCTG GTGTGCGTGTGAGCGATGAAGTAGATAGAGATGAGGAGGGGGAGTGAAGGTTTGTTTGTGATTTGGGAGAGATGAAGAAG AGCTAGTCATAGAGAGGCAGAGGGTCTTTGTGTTGGTTTTAATTGATTAAGTGTTCGGACTTTGGGGGAAAATCAAAGAG TTTAAAAACTGAACACAGAGAGAATGTGTGGGTTATGAATTTTGATTTACTGGTTTTTTTTTTTGTTATGTGTGGTCGTG ATTGCCAATTTTCTCAGAGGTCTAGTTAATTAATGTGTTAAGTAAAATGGAAACAAGTTAATAATTAAAGTTGGATTCTC TTGTCTGAAACCTTAATTGGAGGGAATGAAATAGGGATAAAATTATGGGAGGAACCTTTTTAGAAAATGAGGGAGGGAAT GTGAAAGGTTTTGAGGTAAAGGTATGCGAGTGAATTTCTTCTTACTTTTTTGTTAAATATAATTTAAACTATTAATTATA ATGATGCAAAGTCTTGAAAATTAAATAAAAACGAACACGATACTATAGGTAAAAGATGTAGCAATGATTACAATAGTTTT AGAATTTTTTTTACACATTTTGCGAGCGTAACACGCATTGCAGCGACTGCATCGACCGCAGCAACCGCAACCTCAACCTC TACCTCAATTTAAAGCCCTGATCATCACTTCATCACATGAGTTCTTGCATCATTTGATCTTAATGAAACCTTTGGTGTAT AACCCAGTTATTTGCATTCTGGGGAGCTACCATATGTTGACTATTGTCTAAGTTTTTTCTTCTTCTTTTGTGGTACAGTT GGTTATAATGCAAGCTATGTGCAGACTGACAATGAAGATATGATGTTTTGTTGAACTTGTGCATAGGTGGAAGCAAACGA TGCAGTGACTGTGGCTAGCATGACAAGGCCAAAACTATTGCCGAATGAAGCATTGTCTGACCTTGCTGTATCTGCAGCCA CCAAGCTGCAATGCTACCGTGTAAATATTTTTTTTCTAATAAAAATTGCACTATTTTTATTTTCAGTTTATTTATTTTCA CAACAGTAAGTTAAGTTTCCTTTCCAATGAAGTTAGCTTAAATTCTTTAATTAAAAGCATGCTTACAACTTGAGGCATCT TGCATGTCTCATAAATTGTCCATGACAAGCAAAATTGGTTTAGCTTTGTCTAAGATATGAGATGAAATCTTTATCTGAAC TCCCTTCTCCATGCAGCAAGTTGGGAAATATTTCAAGCAATCTGCCAAGGCATTTGAACAGCAGGTTGCTCGGGAAGCTA GGTTTTATGGTGCCCTTATCAGGTGATTTTCCATTCGTATCTTTTTAACTTCAATACACTTATTTGGGTCAATGTTAGCA AGAAATTGGAAAACATATTTAGATCTTCGGTAACTGCATTTATTCGCCTTCAATAGCTGGCTCTTATATAATTTAGCAAA ATTCCTATATTCATTTCGTCAAGGGTTATTGTTTACTAGCTTACATCACTACCTAAGAACCTAACACATGTCCTAATAAG TGAACAGGTTGCAGCAAAACTGGAAAGTAAAACGGCAACGTCAGCCAGCTATAGGTCCAGGGAATGAAGGCTTCACCTTT GATCTCTTTGATAACACTTATGACCAAGCAGCTATTATCCGGTCATCATTGATGTCCACTGTTCGTGTCAATCATGATGC AGCTGGAATGCTGGCTATAAATGTGTCTCCTAATTCATGCCATTCTCTCCAATTTGGTTTTGTTGGTACACAATCAGATG ATACACAGGGGAAATCAAATGAAAACAAATCCGACAGTGAGCATCACTTAGGAGAAACTGGCAAAGAATCTTTAAGTGAT GAAGGTTGTGTTAAGAAAACAAATTCACTCCTTCGAGAAGTTCATAAAGCAATTTTCAATGAACAGGTAGATTTCTTCTT TAATTGTTGTTGTTGGTTGGCTGTGTCTAGTTTGGAGTTTGTCCTTTTTTCATACGTTGAACATCTCCCTCTTATTGGTT TGTTGCTTTGGTACTTATGCTTGCAGGTGTTTGATCTGGTGAATCGTGAAGCATTTAACACATCTACAGTTGTCAGTGTG ACCGGAATACGGGAAAATTATTTGCAATTAAGCTTAGGTCAACGAACCTCTGTGTACTTATCTTTAGTGTCCTCTGGTCA AGATCATACTAGAGTTGAAGGTGAACTCACCAATAATGTAGAAAATGCAATTTTACCTTTTGAATCTTCTGATGGAATGA AACATGATGCCAAATGGAACACCATCAAGAAGAAAGGGCAGTTTTCCAATTCTACCTGCTATGAGATTTACATTCAACAG ATTTATCACGAACTTATATTTGGAAGAGGTAGTGAAAAACCAACTTCCTCTGGTAGTCGTTTATCTGGTGCACAGGCAAA GGATGGATCCAGTCTTCTTAGTCATTTTTTCATGTCTTTGGCTCATAGGATCTTTTCAACTAAAGTTCTTGCGGAACTGG AAAATGTGGTATTGCTCTTTTGAATTAGAGTTAAGCTGCTTGTAATGTAAAGTGGACATTTTTGTTTAATGAAGCCTTTG GTATCTGTAGGTATGCAAGGTCCCATATCTCCAGCTAATCTCTAATCCCACATGGCATTCTCGGGGGTCATCATGGACAC TCTTCATGGAGGTTCCTCGGTCTATTCTTCGTGGTAGCCAAATCAAAACAGTAGAGTATTGTGAGAAAAACACTATCAAG CGTCAGTTTTGGACTAAGGTGGTGGTAAATGATGATTGCATCATTGTCAAAGCAGAAGGTTCTCCTAATGTTGCAGGCTT GTTCAAGGGAAAGTCTGAGGAAACCCACTCAATAAACAAGTATAACTGCAACTTAGCTGATCTTGGTGTGGTCATTTTGC AGCAGGTAAAAATGAGGGAAAAAGTTGATATCATTGCAGTAATATTTGTATTTGTAAGTAGAGAATTGCATTCATGTAGT TTGCTAGGATGTACTTGAGAGTCTTATATGTGATAATGGATGCTTATTATTACATTTGAAATCATACAGGTTGCAAGCCA AATTATGAATTGGCTCCATCAGGAAGCTTTGATGGTAGGGATAAAGGTGAATCGGGACTTTTTAAGCTTATCTTTTGAGC TGGAGCAGGGGGAAACCCTTGGCTTAGTTGCAAATGTGGATCCAGAAGATGTTGAAGGCGGTATATCTTGGTGGTTGGTC ATGGAGGACAGTTTTGCAGAGGAGCAAAAGCTTCACATAAACGCCACCAATGGTGCATCTGAGTATAGGAAATTTTTAGG TCACTTGTCTCTTGATTTGTTATACGCAACGCTCATGGACTTCGTTAGCTTGTGTAGTGGTGGTAGCGGCCAATGAAGTT TTTAATCTATGTTTTCTGGCACTTTTCAAGTGGTAGATCTTCTGTTTGGTTTAAGTTTTGGCAAACCCAAACTCATGTTT ATACCATACCAAACTTAGTTAAAAAATGAGCTACTGGTATGTGCAAGAAATTAAACTTATTGGGAGGATTGTGGCTTCTG CCAGCAGCCCCTTTTGGATACGTCCGGCCCAACATTTCATTCTACATGAACTATCCATCATTAGTTTAGTTATATACTTA TATTATGCATATATTGCTCGACTCCCTTTAGATATTAGGTTCTCCCGCTTCGGAAGTTAGCCCCTTAAGGATGTGAGTGT TCAATGCTTGAACAGATTGCTTCCGGTGGAAGATACATGTTTTTGATAGATTAATCTAACAGTTAGTACTGAATCCATTT ATCATTGAAGTACTTTGGTAAAGATTTGTAGTTGGTGCGCATAGCCCCACGGTGAGTTTGTAATCAAATGTCCTCTTTCT GTGTGTTGAATGAGTAGATTTTTAAGCCTAATCAGTAATCACCCTGCACCACAGAAAACTGATTGCATTAGGACTTTAAA GGCTCCCTTGCT
CDS sequence (LotjaGi4g1v0269500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACGACGCCATGTCATTGCAGCTCTCACTCGACAAGCTCCCAATCAAGCGTTTGGAGTCTATCGAAGAAAACGGATT CGAACGATTCCCTTCTGATGTTGATAACGAAGAGAAGCGACTCTCGTTGATCAGGCGAATTGACTTCGCTTGGGCCGTTG AGAAGGATGAGGAGAGGAAGAAGCAGAAGAAGAGCTCAAAGGAGCCCTCAACACCATGGCAATGGCAGGGCATGATCGAG AATTTGCAGTTGGCTCATCAGGAGCTTTCTGTCATCATAGATCTCATCAACACTGTGGAAGCAAACGATGCAGTGACTGT GGCTAGCATGACAAGGCCAAAACTATTGCCGAATGAAGCATTGTCTGACCTTGCTGTATCTGCAGCCACCAAGCTGCAAT GCTACCGTCAAGTTGGGAAATATTTCAAGCAATCTGCCAAGGCATTTGAACAGCAGGTTGCTCGGGAAGCTAGGTTTTAT GGTGCCCTTATCAGGTTGCAGCAAAACTGGAAAGTAAAACGGCAACGTCAGCCAGCTATAGGTCCAGGGAATGAAGGCTT CACCTTTGATCTCTTTGATAACACTTATGACCAAGCAGCTATTATCCGGTCATCATTGATGTCCACTGTTCGTGTCAATC ATGATGCAGCTGGAATGCTGGCTATAAATGTGTCTCCTAATTCATGCCATTCTCTCCAATTTGGTTTTGTTGGTACACAA TCAGATGATACACAGGGGAAATCAAATGAAAACAAATCCGACAGTGAGCATCACTTAGGAGAAACTGGCAAAGAATCTTT AAGTGATGAAGGTTGTGTTAAGAAAACAAATTCACTCCTTCGAGAAGTTCATAAAGCAATTTTCAATGAACAGGTGTTTG ATCTGGTGAATCGTGAAGCATTTAACACATCTACAGTTGTCAGTGTGACCGGAATACGGGAAAATTATTTGCAATTAAGC TTAGGTCAACGAACCTCTGTGTACTTATCTTTAGTGTCCTCTGGTCAAGATCATACTAGAGTTGAAGGTGAACTCACCAA TAATGTAGAAAATGCAATTTTACCTTTTGAATCTTCTGATGGAATGAAACATGATGCCAAATGGAACACCATCAAGAAGA AAGGGCAGTTTTCCAATTCTACCTGCTATGAGATTTACATTCAACAGATTTATCACGAACTTATATTTGGAAGAGGTAGT GAAAAACCAACTTCCTCTGGTAGTCGTTTATCTGGTGCACAGGCAAAGGATGGATCCAGTCTTCTTAGTCATTTTTTCAT GTCTTTGGCTCATAGGATCTTTTCAACTAAAGTTCTTGCGGAACTGGAAAATGTGGTATGCAAGGTCCCATATCTCCAGC TAATCTCTAATCCCACATGGCATTCTCGGGGGTCATCATGGACACTCTTCATGGAGGTTCCTCGGTCTATTCTTCGTGGT AGCCAAATCAAAACAGTAGAGTATTGTGAGAAAAACACTATCAAGCGTCAGTTTTGGACTAAGGTGGTGGTAAATGATGA TTGCATCATTGTCAAAGCAGAAGGTTCTCCTAATGTTGCAGGCTTGTTCAAGGGAAAGTCTGAGGAAACCCACTCAATAA ACAAGTATAACTGCAACTTAGCTGATCTTGGTGTGGTCATTTTGCAGCAGGTTGCAAGCCAAATTATGAATTGGCTCCAT CAGGAAGCTTTGATGGTAGGGATAAAGGTGAATCGGGACTTTTTAAGCTTATCTTTTGAGCTGGAGCAGGGGGAAACCCT TGGCTTAGTTGCAAATGTGGATCCAGAAGATGTTGAAGGCGGTATATCTTGGTGGTTGGTCATGGAGGACAGTTTTGCAG AGGAGCAAAAGCTTCACATAAACGCCACCAATGGTGCATCTGAGTATAGGAAATTTTTAGGTCACTTGTCTCTTGATTTG TTATACGCAACGCTCATGGACTTCGTTAGCTTGTGTAGTGGTGGTAGCGGCCAATGA
Protein sequence (LotjaGi4g1v0269500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDDAMSLQLSLDKLPIKRLESIEENGFERFPSDVDNEEKRLSLIRRIDFAWAVEKDEERKKQKKSSKEPSTPWQWQGMIE NLQLAHQELSVIIDLINTVEANDAVTVASMTRPKLLPNEALSDLAVSAATKLQCYRQVGKYFKQSAKAFEQQVAREARFY GALIRLQQNWKVKRQRQPAIGPGNEGFTFDLFDNTYDQAAIIRSSLMSTVRVNHDAAGMLAINVSPNSCHSLQFGFVGTQ SDDTQGKSNENKSDSEHHLGETGKESLSDEGCVKKTNSLLREVHKAIFNEQVFDLVNREAFNTSTVVSVTGIRENYLQLS LGQRTSVYLSLVSSGQDHTRVEGELTNNVENAILPFESSDGMKHDAKWNTIKKKGQFSNSTCYEIYIQQIYHELIFGRGS EKPTSSGSRLSGAQAKDGSSLLSHFFMSLAHRIFSTKVLAELENVVCKVPYLQLISNPTWHSRGSSWTLFMEVPRSILRG SQIKTVEYCEKNTIKRQFWTKVVVNDDCIIVKAEGSPNVAGLFKGKSEETHSINKYNCNLADLGVVILQQVASQIMNWLH QEALMVGIKVNRDFLSLSFELEQGETLGLVANVDPEDVEGGISWWLVMEDSFAEEQKLHINATNGASEYRKFLGHLSLDL LYATLMDFVSLCSGGSGQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 650 | 646 | 2.1E-187 | – | |
| PANTHER | 5 | 650 | 646 | 2.1E-187 | ||
| MobiDBLite | 240 | 270 | 31 | - | – | |
| MobiDBLite | 247 | 270 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Transcription coregulator activity | A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to either activate or repress the transcription of specific genes. Coregulators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. A third class modulates interactions of DNA-binding transcription factor with other transcription coregulators. | ||
| Biological process | Regulation of transcription by RNA polymerase II | Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II. | ||
| Cellular component | Mediator complex | A protein complex that interacts with the carboxy-terminal domain of the largest subunit of RNA polymerase II and plays an active role in transducing the signal from a transcription factor to the transcriptional machinery. The mediator complex is required for activation of transcription of most protein-coding genes, but can also act as a transcriptional corepressor. The Saccharomyces complex contains several identifiable subcomplexes: a head domain comprising Srb2, -4, and -5, Med6, -8, and -11, and Rox3 proteins; a middle domain comprising Med1, -4, and -7, Nut1 and -2, Cse2, Rgr1, Soh1, and Srb7 proteins; a tail consisting of Gal11p, Med2p, Pgd1p, and Sin4p; and a regulatory subcomplex comprising Ssn2, -3, and -8, and Srb8 proteins. Metazoan mediator complexes have similar modular structures and include homologs of yeast Srb and Med proteins. |
Expression pattern of LotjaGi4g1v0269500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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