Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi4g1v0270000
Transcript ID	LotjaGi4g1v0270000.1
Lotus japonicus genome version	Gifu v1.2
Description	Ribosome biogenesis regulatory protein like; TAIR: AT2G37990.1 ribosome biogenesis regulatory protein (RRS1) family protein; Swiss-Prot: sp\|Q9SH88\|RRS1_ARATH Ribosome biogenesis regulatory protein homolog; TrEMBL-Plants: tr\|I3S802\|I3S802_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0270000
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr4:63518284..63521905) extracted from Lotus japonicus Gifu genome v1.2.

CTGAACCAAACAAAACACACCCAAATACAATTAGTTTCGGATCACAGGTTTGTGAACCACAACCCATGGATTATAGACCT GACCCGATTGACATGTGTTTTTTTCTTCTTTGAAAGAAACCTATATTTACTTACTTCATCTAAATATCTCATGTACTCTA CCTAGGGTTCCCCTTCCCGCCTCCCCCACCGGAAAGAACTAGTCTCGCAGCGCCGCTCTCCGCCCATCGCCGCCCACTGT CGCCGGTTCTCTTAAGGTATCCCTCTCTCTCTCTCGCTCGTTCAGTGCTCTCCTTGCTTGTTTGTTAACTATTTGATTGA ATTTGTGTTGATTTGTTGAAGTTTGAAGCAGATGGAGATTGACGGCGTCGAGCACCAGAAGGTGTTTGAGGTGGACCTGG GTCACCTGATGGCGTTCGATTCTCATCACACGTTCCCTACTCAACCACCTCTTTCCAGGGAGGATCTCGTCAAGCAGGCT CTACAAAAAGGCACTGAGCTAGTTCAAGCTATTGCAGATTCCCTCTTTACTCTGCCAGCTACTGAAGATGTTGATGGACC CCTTGTTAAGCTTCCTGCACCTCTCACCAGATTGCCCAGAGAAAAACATGTAACCCCATTCTCCCTAGTTGCAAATTTTC AACTGCCCAATAAAGCCTTTTGTTAATCACATTACAATTATATATTTGTTTATAGTTAATGTTATGACTTTATGTTTCTT AAACATACTATGGTGCCGTTTGGGAAAACAACTTAATTAAGCGCTTATGGTCATAAGCGACCATAAGCGCACACTATTTT TATAAATTTATTGAAATAAATTGAGAATAAGCTATATATAAGCATGAGCTCTTTTTCGTAAGCTATCCTGAGTAGCTTAA TAAGCTCAAAACAGCTTATGGCTTACACAAGCGCTTATGCTATCAAATAAGCTCAAATAAGCTCTTCCAAACGGGGCCTA TAGCTATATAATTATGGTCTTGCAATGAGTTTTACACTTGCCTCTGTTTTGATGTTATTTTGAGTATTGAGTAATTTGCT CATCATGTTTTATAATGCTTTTCAGCTGCCAAAACCAAAGCCTCCTACTAAATGGGAAGCTTTTGCCAAAAAGAAAGGTT AGTCATGATGTTGCATGTGTAGCTCTCATATAATGTATTATTTATTGTATTAATGCTGTCTCTTTTCGCATTGTTTGGGT TGTCTGATTTGGGGTTTGGTTTGTTGTCCTATTTTTACTAGCCGAACCTTACTGTGTTGTTTTTCAGGCATACAAAAAAA GAAGAAAGACAAGGTTTTGTATGATGAACAATCTGGAACTTGGAAACGCAGATACGGGTATGATCGTGCGAATGATGAAG ATGCTGTGCCTATCATTGAAGCAAAGGAAACTGACGGTAAATAATTGAACATGTCTTTTGTCATTATGGAATGAATATTG AAATCACTGCTACATGTTTCTCTTAATGGCAATGTATGGTGTGTAGACACCCTTGGAGGTGCATAACTGAAACATTTGAG AGGAATAGGTTGAAATTTAACTTTCTACAATTCATGGTAAAGTTGTACAAGGCACATATGCTCAGACAGCACAAGCTAAA TGGAAATTTTACATTGAAGCACACCATTTAGGCATTTGAAGATCCAAACTATAAAATATGAACATTTAAATATATGGGGT AACTCCCAATACTCAATTGTAGCCCATAGTTGACTTTCTGGGTTTCCAAGAGTATTATACCATGCATCTATTTAATAGAG TTGCATTCAGTGACAACGTCAAAATTTGGAAAATGTTTTTGTACCTTTTTTGGCAAATTGTTATGTATGTGCTTGATACT CCATGTTGGACCTGAAGATTCTTGTCTTTGACTATCTTTATTGAGGTAGATTGTAGTTTATAATTATCTATTTCAAATCA TTGTTAAATATTACGTTAACGTCTTGTGTGGCCATATGGGATTGCTGTTAATATTTATCTAACATATGTTATCATCTCTA TCATTTTCTCAGTGCATATTTAGGTGCATGCTTGTAGTTATCATTCTCTGGGTGTGTGATTTTATACATCGATCAAATCT ACAAGGACGGTATATCATTTATTGATACTGTAACTCTTTGCAGATCCTACAGAGGATCCTTTTGCCAAAAGAAAAGAAAA TAAAAGGAACAGAGTTGATAAACAGGAGAAAAACCGACTACAGAACTTGAAAGAAGCTGCAAAATTTGGTGCTTTACCAA GGTTTTTTTCTACCCTTTCCAGTTAGCCTGGCGCATTTGTAGTATCTGTTACTATTCGTCATGATATGCATCACAGGTTT ATAGTTGAATAATTTATTTCATGGATCATTGATTCCTTTCCTTAAAATAAACGGCCGTTGTGGAGTCAGAGGCCTCAGCT TTTTATTTCTCTGTTTCAGTCATATGTGTTGATGTTCCCAACTCTAGGAACACTGAAAAATCCACAAGCAGCTTCCTAAA AAAATGGAGTGTCAACCTTGTACTAGTTCAGAAATGGTTTCTACCATTTCAAACCATTTCTGTGACTCTGTTGGTAGCAT TCCTAATAGTTTTATGTGGAGGGTTTTGACCTTTAGCTCTTTGTACTCTCCAAAATACATATGTTTATTCTTTTTCTCAC CCTTCTTTGCACATATTCATGCTGTTTATCTTGTAATGAGATCTGAATGAATCTTTTACAGCCATGTTCAGTTGGCTGCT ACAGCTTTGCCTATAACAGGAACTCAAGCAGCACCCAAGAAAGTTACCAAGGATGAATTAGGTAATGTTGCAGGAATTGC TGCAACTTCAACAGCTAGTGGTGGGAAATTTGACAAGAAATTGGCGGGTGAAAAGCCTCCACAGCATAAAGGAAAATATC GAAAGGTTGTACAATGTGCTGCTACAGAAATCAGTTTCTCATCCATATAAATTATTCTATATAGAAGCCCCCATATTTCA TGAAATTGGCTAATTAGCTTCCTTTGTTCTGTTTTCATCTAGTTCCTGCCGGTGGCAGAAGGAACAGGGATGGGATCACT CGAGAGGCAGCAAACTGAAAAAATATTGAACAAGATCATGTCCAAGAATTCCCATGACATACTCAATGTCAACAAGGTAA ATTGCTTGTCATCTAGTTACATAGATTTCAAATTTTACCCATTTTTGTTTACCTTTTTTTTTTTATAATTCTTTTGCACT CCAGGCTGTCACTGTGCAAACTGTGAAGAAGGAGAAAAAACGAAATAATGATAAAGCTAGGGCTTCATCGACTGACAGCA AATTGAAACCTAAGAAGAAGCCTTTTAAAAAAGGAGATTTCAAGAAAAGCAGTGGAAAAGGAGATTTCAAGAAAAGCAGT GGAAAAGGAGATTTCAAGAAAAGCAGTGCAAAACCAAAACAGTAGTTTAGATTTTATCACAGGGTGTAGAGTTTTTTGAA CTCTGTTTTACTATTTTTGAAGTTTTGTAGACAATTATTTAATCTATCATTTGGTGTCCTTTTATTTACTCTCCTTATAA TCAAATTCCCCTTTTTGTATGAATCAATTCGTTTTTTTTAATAGACGAAAGAGCTCCTTATTGATTTTTCAAATCAATCC TTAAATATATGGTTGAGCCTTA

Download Genomic Sequence

CDS sequence (LotjaGi4g1v0270000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGATTGACGGCGTCGAGCACCAGAAGGTGTTTGAGGTGGACCTGGGTCACCTGATGGCGTTCGATTCTCATCACAC GTTCCCTACTCAACCACCTCTTTCCAGGGAGGATCTCGTCAAGCAGGCTCTACAAAAAGGCACTGAGCTAGTTCAAGCTA TTGCAGATTCCCTCTTTACTCTGCCAGCTACTGAAGATGTTGATGGACCCCTTGTTAAGCTTCCTGCACCTCTCACCAGA TTGCCCAGAGAAAAACATCTGCCAAAACCAAAGCCTCCTACTAAATGGGAAGCTTTTGCCAAAAAGAAAGGCATACAAAA AAAGAAGAAAGACAAGGTTTTGTATGATGAACAATCTGGAACTTGGAAACGCAGATACGGGTATGATCGTGCGAATGATG AAGATGCTGTGCCTATCATTGAAGCAAAGGAAACTGACGATCCTACAGAGGATCCTTTTGCCAAAAGAAAAGAAAATAAA AGGAACAGAGTTGATAAACAGGAGAAAAACCGACTACAGAACTTGAAAGAAGCTGCAAAATTTGGTGCTTTACCAAGCCA TGTTCAGTTGGCTGCTACAGCTTTGCCTATAACAGGAACTCAAGCAGCACCCAAGAAAGTTACCAAGGATGAATTAGGTA ATGTTGCAGGAATTGCTGCAACTTCAACAGCTAGTGGTGGGAAATTTGACAAGAAATTGGCGGGTGAAAAGCCTCCACAG CATAAAGGAAAATATCGAAAGTTCCTGCCGGTGGCAGAAGGAACAGGGATGGGATCACTCGAGAGGCAGCAAACTGAAAA AATATTGAACAAGATCATGTCCAAGAATTCCCATGACATACTCAATGTCAACAAGGCTGTCACTGTGCAAACTGTGAAGA AGGAGAAAAAACGAAATAATGATAAAGCTAGGGCTTCATCGACTGACAGCAAATTGAAACCTAAGAAGAAGCCTTTTAAA AAAGGAGATTTCAAGAAAAGCAGTGGAAAAGGAGATTTCAAGAAAAGCAGTGGAAAAGGAGATTTCAAGAAAAGCAGTGC AAAACCAAAACAGTAG

Download CDS Sequence

Protein sequence (LotjaGi4g1v0270000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEIDGVEHQKVFEVDLGHLMAFDSHHTFPTQPPLSREDLVKQALQKGTELVQAIADSLFTLPATEDVDGPLVKLPAPLTR LPREKHLPKPKPPTKWEAFAKKKGIQKKKKDKVLYDEQSGTWKRRYGYDRANDEDAVPIIEAKETDDPTEDPFAKRKENK RNRVDKQEKNRLQNLKEAAKFGALPSHVQLAATALPITGTQAAPKKVTKDELGNVAGIAATSTASGGKFDKKLAGEKPPQ HKGKYRKFLPVAEGTGMGSLERQQTEKILNKIMSKNSHDILNVNKAVTVQTVKKEKKRNNDKARASSTDSKLKPKKKPFK KGDFKKSSGKGDFKKSSGKGDFKKSSAKPKQ

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR17602 View details on PTHR17602 Search for proteins/transripts with this domain View external data on PTHR17602	7	285	279	1.5E-78	IPR007023 Show description in modal box View details on IPR007023 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF04939 View details on PF04939 Search for proteins/transripts with this domain View external data on PF04939	13	175	163	5.4E-51	IPR007023 Show description in modal box View details on IPR007023 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	143	169	27	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	219	262	44	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	230	248	19	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	291	313	23	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	291	351	61	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	324	351	28	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005634 View details of GO:0005634 AmiGO InterPro QuickGO	Cellular component	Nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.	Subterm of View details of GO:0043231
GO:0042254 View details of GO:0042254 AmiGO InterPro QuickGO	Biological process	Ribosome biogenesis	A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.	Subterm of View details of GO:0022613

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0270000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

LotjaGi4g1v0270000.1