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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0270200 |
| Transcript ID | LotjaGi4g1v0270200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nucleotide/sugar transporter family protein; TAIR: AT2G25520.1 Drug/metabolite transporter superfamily protein; Swiss-Prot: sp|Q9SKJ7|PT225_ARATH Probable sugar phosphate/phosphate translocator At2g25520; TrEMBL-Plants: tr|G7JCY0|G7JCY0_MEDTR Nucleotide/sugar transporter family protein; Found in the gene: LotjaGi4g1v0270200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:63579523..63580560) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGGTCTCCGATGGCATGCTCAAGAAAATCATCCTCTCCTACACCTACGTCGCGATTTGGATCTTCCTCAGCTTCAC CGTCATCGTATACAACAAGTACATCCTCGATCGCAAGATGTACAACTGGCCATACCCGATCTCGCTCACCATGATCCACA TGGGGTTTTGCTCCTCCCTCGCTTACCTCCTCGTCCGCGTCTTCAAGCTCGTCGAGCCTGTTTCCATGTCGCGCGAGCTT TACCTCAAATCTGTGGTTCCGATCGGCGCGCTCTACTCGCTCTCCCTCTGGTTCTCGAATTCCGCTTACATCTACCTCTC GGTTTCGTTTATTCAGATGCTCAAGGCTCTCATGCCGGTGGCTGTTTACTCGATCGGGGTTTTGTTCAAGAAAGAGAGCT TCAGGAATGAAACCATGGCGAACATGGTTTCAATCTCTATGGGTGTTGCTGTTGCTGCGTATGGTGAGGCCAAGTTTGAT GTGTTTGGTGTCAGCCTTCAGCTTCTGGCGGTTGCGTTTGAGGCTACTCGATTGGTCTTGATCCAGATTTTGCTCAATTC TAAGGGGATCTCGTTGAACCCCATTACCTCGCTTTACTACATTGCTCCTTGTTGTTTGGTGTTCTTGTCTGTTCCATGGC TTATTGTGGAGTACCCTTCATTGAGGGATAATTCCAGCTTCCATTTGGATTTTGCCGTTTTCGGGACCAATTCGGTTTGC GCATTTGCTTTGAACCTTGCTGTGTTCTTGCTGGTTGGGAAGACGTCGGCGTTGACAATGAATGTTGCTGGGGTGGTTAA GGATTGGCTCTTGATTGCGTTCTCTTGGTCTGTGATAAAGGACACGGTTACGCCTGTGAATTTGATCGGTTACGGGCTGG CGTTTTTGGGGGTTTGTTACTATAATCATTCGAAATTGCAGGCTCTCAAGGCTAACGAGGCGCAGAAGAAGGCTCAGCAG GCTGATGAAGAGGCTGGAAGGTTGTTGGAACAGAGAGATGGGGAAGGGACCGGAAGGAAGAACGAGAACCAGGGCTGA
CDS sequence (LotjaGi4g1v0270200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGTCTCCGATGGCATGCTCAAGAAAATCATCCTCTCCTACACCTACGTCGCGATTTGGATCTTCCTCAGCTTCAC CGTCATCGTATACAACAAGTACATCCTCGATCGCAAGATGTACAACTGGCCATACCCGATCTCGCTCACCATGATCCACA TGGGGTTTTGCTCCTCCCTCGCTTACCTCCTCGTCCGCGTCTTCAAGCTCGTCGAGCCTGTTTCCATGTCGCGCGAGCTT TACCTCAAATCTATGCTCAAGGCTCTCATGCCGGTGGCTGTTTACTCGATCGGGGTTTTGTTCAAGAAAGAGAGCTTCAG GAATGAAACCATGGCGAACATGGTTTCAATCTCTATGGGTGTTGCTGTTGCTGCGTATGGTGAGGCCAAGTTTGATGTGT TTGGTGTCAGCCTTCAGCTTCTGGCGGTTGCGTTTGAGGCTACTCGATTGGTCTTGATCCAGATTTTGCTCAATTCTAAG GGGATCTCGTTGAACCCCATTACCTCGCTTTACTACATTGCTCCTTGTTGTTTGGTGTTCTTGTCTGTTCCATGGCTTAT TGTGGAGTACCCTTCATTGAGGGATAATTCCAGCTTCCATTTGGATTTTGCCGTTTTCGGGACCAATTCGGTTTGCGCAT TTGCTTTGAACCTTGCTGTGTTCTTGCTGGTTGGGAAGACGTCGGCGTTGACAATGAATGTTGCTGGGGTGGTTAAGGAT TGGCTCTTGATTGCGTTCTCTTGGTCTGTGATAAAGGACACGGTTACGCCTGTGAATTTGATCGGTTACGGGCTGGCGTT TTTGGGGGTTTGTTACTATAATCATTCGAAATTGCAGGCTCTCAAGGCTAACGAGGCGCAGAAGAAGGCTCAGCAGGCTG ATGAAGAGGCTGGAAGGTTGTTGGAACAGAGAGATGGGGAAGGGACCGGAAGGAAGAACGAGAACCAGGGCTGA
Protein sequence (LotjaGi4g1v0270200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVSDGMLKKIILSYTYVAIWIFLSFTVIVYNKYILDRKMYNWPYPISLTMIHMGFCSSLAYLLVRVFKLVEPVSMSREL YLKSMLKALMPVAVYSIGVLFKKESFRNETMANMVSISMGVAVAAYGEAKFDVFGVSLQLLAVAFEATRLVLIQILLNSK GISLNPITSLYYIAPCCLVFLSVPWLIVEYPSLRDNSSFHLDFAVFGTNSVCAFALNLAVFLLVGKTSALTMNVAGVVKD WLLIAFSWSVIKDTVTPVNLIGYGLAFLGVCYYNHSKLQALKANEAQKKAQQADEEAGRLLEQRDGEGTGRKNENQG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 3 | 85 | 83 | 1.3E-180 | – | |
| PANTHER | 3 | 85 | 83 | 1.3E-180 | – | |
| Phobius | 12 | 31 | 20 | - | – | |
| TMHMM | 12 | 31 | 20 | - | – | |
| Phobius | 32 | 42 | 11 | - | – | |
| Phobius | 43 | 65 | 23 | - | – | |
| TMHMM | 46 | 68 | 23 | - | – | |
| Phobius | 66 | 84 | 19 | - | – | |
| TMHMM | 80 | 101 | 22 | - | – | |
| PANTHER | 85 | 306 | 222 | 1.3E-180 | – | |
| Pfam | 85 | 274 | 190 | 1.1E-15 | ||
| PANTHER | 85 | 306 | 222 | 1.3E-180 | – | |
| Phobius | 85 | 101 | 17 | - | – | |
| Phobius | 102 | 109 | 8 | - | – | |
| Phobius | 110 | 127 | 18 | - | – | |
| Phobius | 128 | 132 | 5 | - | – | |
| TMHMM | 131 | 153 | 23 | - | – | |
| Phobius | 133 | 157 | 25 | - | – | |
| Phobius | 158 | 168 | 11 | - | – | |
| TMHMM | 166 | 188 | 23 | - | – | |
| Phobius | 169 | 188 | 20 | - | – | |
| Phobius | 189 | 202 | 14 | - | – | |
| Phobius | 203 | 223 | 21 | - | – | |
| TMHMM | 203 | 225 | 23 | - | – | |
| Phobius | 224 | 229 | 6 | - | – | |
| Phobius | 230 | 251 | 22 | - | – | |
| Phobius | 252 | 256 | 5 | - | – | |
| Phobius | 257 | 274 | 18 | - | – | |
| Phobius | 275 | 317 | 43 | - | – | |
| Coils | 283 | 303 | 21 | - | – | |
| MobiDBLite | 289 | 317 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0270200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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