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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0270300 |
Transcript ID | LotjaGi4g1v0270300.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Xylosyltransferase 1; TAIR: AT5G15050.1 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; Swiss-Prot: sp|Q9LFQ0|GT14B_ARATH Beta-glucuronosyltransferase GlcAT14B; TrEMBL-Plants: tr|I3S3R0|I3S3R0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0270300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:63602595..63605383) extracted from Lotus japonicus Gifu genome v1.2.
CAACAACAACAACAACAACAACAGAAGAAGCGAAAATGGTTCCTCCCCTTAATCTTCTCCCTTCTACTCTCCACCATCCT CATCCTCCTTTCAATCTTCGTCTCCTCCGATTCCTCCTCCCTGCTCTACCTCTACCGCTCACGCGCCACCCCAGACCAAC CGCACTTCGTCGAGTCCAAGCTGAAACCCTCCACCACTTCACCCATCAACTCTGTTCCCAGGATCGCCTACTTGATCTCC GGTTCAATGGGTGATGGGGAAACTCTCAAGAGGACGCTTAAGGCCCTTTACCATCCCAGAAACCAGTACGCTGTGCATTT GGACCTGGAGGCTCCTCCTCTTGAGAGATTGGACCTTGCTAACTTTGTCAAGAACGAGCCTCTGTTTGCTCAACTGGGTA ATGTTCGGATGATCGTGAAAGCTAACTTGGTTACCTATAGAGGACCTACCATGGTCACCAATACCCTTCACGCTGCTGCT GTTTTGTTCAAGGAAGGTGGAAACTGGGACTGGTTCATCAATCTCAGCGCTTCTGATTATCCATTGGTTACACAAGATGG TACCCTTTTTTCATCTCATGTTTGTTCTTGACGGGTATAACGATGTAGATTTTTTTGTTGGTTAGTGTTAGTGTGTTTTT TATGGAAATTCATTTAAAATTCGTTATATTTGAGATGGGGATGGATGGATGATTATTCATTGGCTTGGCTGTTTCCTAGT TACCGATTTGGTGTTTGGTGATTTAAATGCTGTTTTGTTTTGTGATGCATTAGTTGAAAGTTAGAAGCTGACTTGCTTGT TTCTTAGTGAGGTTATTGCCAGCTGACAGCTGCATTTTGTTGCTAATTTTGCTTATAGATATATGTAGAGACTTTCTGGA TTTGGATTAGTCTGATCTGGTCCCAAATTGTTGTTATTATTACAACATTTGTCAGCAGGAACCCCCCAATTATGCTCTTG TATTGTAGGCCAGGTTTGGAGGGAGGAATGCTGGGTTTCAGATAGAATTCATTGAAACTCCAGTCCACTAGTTTTATTTT TTACTTTGAGTTGACTTTATGTTTGCAAGTGTGTAACCTCTCTGCCATGTGTGTTGGATGGATACCATATAAGAAAAAAA TCTAATGAGAATTTTGATGGTTGCTTGTTAACTCCGTTAATTCATTGGAACATAAAAGAGAATTAGGAATGTGAATCATA TTGTCTTGTTTTCACAATCATCCACTGACTCTTTCAATTTACTATGTCTCTTTTGCACAACAGATCTGCTGCATACGTTA TCATCTGTTCCGCGGCACCTTAACTTCATTGAGCACACCAGTGATATTGGATGGAAGGAGTATGTTGCTGATCCTTTCAT CCCTTCTTTTTATTGTATGATTTGTTTGAAATTCAAAAGTAACCTGCAGTTTTATGAAATATAAATGTGTCTTATCTTGA TTAGTAAATCTTTACTGTTTTCTTTTTTCAATAGAGATCAGAGAGCCAAGCCTGTTATAATTGATCCGGCACTTTATAGC ATCAATAAATCTGATGTGTTTTGGGTGACAGAGAAAAGAAGTGTTCCCTCAGCATATAAACTGTTCACAGGTGAGAAACC TGGTTTCTGATGCCCTCTCAGCTTTATTCAATCTCTATTTTAATATTTTTCTTCTCGCCAGCTTAATTATTTTGCTCTTT CAAACTTGTAGAATGTTTCAATAGTCTATGAGCCATCTAACCCTTGAATAGATTGAAGATATTTCTAAAACCCAAATAGC TGTAAAAAAGTTCTGGAATGAAGTCAAACAGCCATAATAAAAAGGTAAAAAGAGAGCAATCATAGTGTTGCCAATCCAAT TTATGGACTAACTTCAGTATCCAGTGGTTTTGAGTATGATTACTCAGAATTATAGCACCTTTTCCCTTTTCTCTTTTCAC ATAATTCTTGGACTCATTATGCCATATGTCATGGGTACTGGTTGGTAATTCTAAAACAGCCTCTGTGTATCCCTTCTCCG TAAATCATTTCATTCTCACATTAGGTCTAATTGCACATGCTCATTCTGGTTCCTTTTTCCTTATTTTGAGTTCTTTTAAA CAAGAAGCCATTTGCAGCTAAACTACCTCATGAGATCACCCACTTTACTCGAATCTGTGACATCAAACAAGCTTTTTCAA TAGCTGTTTATTACCTGGAAAACTCAAGATCTGGAGATCATAACTTGCAATATCATTAGTCTTGGCTCTGTGCTATCTAT CTGACTTTAATTTTTGCTACCTGATTTTGTTTAGGTTCTGCGTGGATGATGCTCTCTCGCCAATTTGTTGAATATATGTT ATGGGGATGGGATAACTTGCCGAGAGTAGTCTTGATGTATTATGCCAACTTCCTATCTTCCCCTGAAGGGTATTTTCACA CAGTCATCTGCAATGCCGAGGAGTTTCGTAACACTACTGTGAACCATGACCTCCACTTCATATCATGGGACAACCCTCCA AAGCAACACCCACACTATCTCACAATGGATAACTATCAGGGAATGCTGGACAGCAATGCTCCTTTTGCTCGGAAGTTCGG CAGGAATGAACCCCTCTTGGATAAGATTGACAGTGAAATCCTGGGACGAAATGATCATGGTTACGTACCTGGCAAATGGT TCACTCAAGCAAATCCAAACATCACCAAATCGTATTCTTTTGTAAGGAACATCACGGAACTCAGTCCCGGCCCTGGAGCA GAAAGGCTTAAACGGCTTATCAATGGCTTATTATCAGCTGAAAATTTTAAGAACAACCAGTGTGCTTGA
CDS sequence (LotjaGi4g1v0270300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGATGGGGAAACTCTCAAGAGGACGCTTAAGGCCCTTTACCATCCCAGAAACCAGTACGCTGTGCATTTGGACCT GGAGGCTCCTCCTCTTGAGAGATTGGACCTTGCTAACTTTGTCAAGAACGAGCCTCTGTTTGCTCAACTGGGTAGTGGAA ACTGGGACTGGTTCATCAATCTCAGCGCTTCTGATTATCCATTGGTTACACAAGATGATCTGCTGCATACGTTATCATCT GTTCCGCGGCACCTTAACTTCATTGAGCACACCAGTGATATTGGATGGAAGGAAGATCAGAGAGCCAAGCCTGTTATAAT TGATCCGGCACTTTATAGCATCAATAAATCTGATGTGTTTTGGGTGACAGAGAAAAGAAGTGTTCCCTCAGCATATAAAC TGTTCACAGGTTCTGCGTGGATGATGCTCTCTCGCCAATTTGTTGAATATATGTTATGGGGATGGGATAACTTGCCGAGA GTAGTCTTGATGTATTATGCCAACTTCCTATCTTCCCCTGAAGGGTATTTTCACACAGTCATCTGCAATGCCGAGGAGTT TCGTAACACTACTGTGAACCATGACCTCCACTTCATATCATGGGACAACCCTCCAAAGCAACACCCACACTATCTCACAA TGGATAACTATCAGGGAATGCTGGACAGCAATGCTCCTTTTGCTCGGAAGTTCGGCAGGAATGAACCCCTCTTGGATAAG ATTGACAGTGAAATCCTGGGACGAAATGATCATGGTTACGTACCTGGCAAATGGTTCACTCAAGCAAATCCAAACATCAC CAAATCGTATTCTTTTGTAAGGAACATCACGGAACTCAGTCCCGGCCCTGGAGCAGAAAGGCTTAAACGGCTTATCAATG GCTTATTATCAGCTGAAAATTTTAAGAACAACCAGTGTGCTTGA
Protein sequence (LotjaGi4g1v0270300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGDGETLKRTLKALYHPRNQYAVHLDLEAPPLERLDLANFVKNEPLFAQLGSGNWDWFINLSASDYPLVTQDDLLHTLSS VPRHLNFIEHTSDIGWKEDQRAKPVIIDPALYSINKSDVFWVTEKRSVPSAYKLFTGSAWMMLSRQFVEYMLWGWDNLPR VVLMYYANFLSSPEGYFHTVICNAEEFRNTTVNHDLHFISWDNPPKQHPHYLTMDNYQGMLDSNAPFARKFGRNEPLLDK IDSEILGRNDHGYVPGKWFTQANPNITKSYSFVRNITELSPGPGAERLKRLINGLLSAENFKNNQCA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 51 | 51 | 3.5E-182 | – | |
PANTHER | 1 | 51 | 51 | 3.5E-182 | – | |
PANTHER | 52 | 306 | 255 | 3.5E-182 | – | |
PANTHER | 52 | 306 | 255 | 3.5E-182 | – | |
Pfam | 52 | 215 | 164 | 1.0E-48 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi4g1v0270300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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