Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi4g1v0272200 |
Transcript ID | LotjaGi4g1v0272200.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Equilibrative nucleoside transporter family protein; TAIR: AT1G02630.1 Nucleoside transporter family protein; Swiss-Prot: sp|Q84XI3|ENT8_ARATH Equilibrative nucleotide transporter 8; TrEMBL-Plants: tr|A0A0L9TSA9|A0A0L9TSA9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0272200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:63891488..63896502) extracted from Lotus japonicus Gifu genome v1.2.
CTCAAAACAACTTATAAGTAGATTATAAGCTATTTACATAAACTCTCTCAAATACATACATAAGCACTTATACTATTTAT GTTATACGTTAAGTTCAAATAAACTCTTCCAATAGGGCCTTATATAATGGAAGGGCCATTGTCATGAATATCAAGCATCC AATTGATGTTAATTGGGGGTCAAGTAAAAGAGAGTCACAAGACAGCTTACACATGGTGTGACTGTATGACCAAATGGTAT ATCTGATATCACCCATCCGTTGTTGTCCCCACAGAGCATAATTTTTCTTCTTCATACATTAAGCATATCGGTTCCAGGTC CAACCCCATCAATCACATGTGTGGGTGCATGTGTTATATATAAGTGCTGGCAGAAATGTCAAACTAGTCCCAAACCAGCT ATAGCATAAGTAGAACTACTTGTATCAGCCAACTATGCAAGCATTTTCAGACTACTTCTAAGCACAGATAAAATCACTTC TGACTCTCTTCATATATCATCATACTTCAGCAAAAGTATCAACCACGAATGCAATGGAAGCTGTGAAGCTGGTCTCTAGT GATGAGAGAACAGACACTTACAGAGTTGCTTACATAATCCATTTCTTGCTTGGTGCTGGAAACTTGCTTCCTTGGAATGC CTTGATCACAGCAGTTGATTACTTCTACTACCTCTACCCGACTGAACACATCGAAAGGGTTTTCTCGGTGGCTTACATGA TTTCATCAGTGCTGGTGCTTCTTGTGATGATAAGTTGGAGAAGTTGGAGCAAAACAACATTGAGGTTGAGATTGAACTTG GGATTCTCCATGTTTGTTGTGTCTCTAATGGTAGCGCCGGTGATCGACTGGACCTCCAGCAGCACCAGTCTGGAAGAGAG ACCGAGCGGTGCCTTAGGTTTGACAGTTGCAGCTGTGGTAGTGTGTGGTTTAGCAGATGGCTTGGTAGGTGGAAGCTTGA TAGGATCAGCTGGAAAACTCCCCAAACAGTATATGCAAGCTGTTTTTGCAGGAACTGCTTCCTCAGGTAAAACACAGTTC AGTGCACTCCAAAGTGTTCAATTTTACTTTCCTCTTTGTTCCAAACAGGCAGATTATGTTTTCCTATGATTGAACAAATC CTTAGGAATATAATAACACTGCATAAGATAAAGCATGTCTAAAATAAAGCAGTTTTAAACAAGATCTTCTTTACGTATAT ACAAGATTTTGAAGGTTAGGGGCACTAGGGGCAAAAACAAAAGTAGATTCCAGAGTCTCCTTTTCTTGATTTTTGACTGG CTATTGCATCTTACTCCCACCAATATGTCAAGATATTGTCCATGTATTTAGCAGATTCTTTCATGTATAATCTATAAATA ATCTTATCTATTGAGAAAACCATGCTACAACTTACATCGACAGCCACTTGAACTAAATTCAAATACTACAAATTTGAACC TGCTACTGATCTAGTTACTTTTCTTGCTTAACTAAGCTTTCCTCCTTTTTATGATTTCTTTCCCATTATTTCCTTTCACT TTCTCTTGTTTCAAGCGAAGCTCTAGTTTTGACATGTACAGCTAAAGCCATTTCTGCTGCCGAAAATTAGAATCTCAGTA ATCAATAGAGCAGTTTATTTTGATTTCATGATTTGTACAGAAACCAAAGCACATTTACTCAGAAGCTGAGATTTGTAGCT TTTTTATCTAGAAGTGATTCTAGAACATTTCATCATGGAATGAAACATGCTATCTGAGTAACTTTGAAACTGAAGAGCTG TCAAAGTTGGTTCCAATACTAATCAAAATCTTCTGTGATGGCAGGTATTATAATTTCAATCTTGAGGATCATAACCAAGG CATCACTCCCACAAACCCCAAAGGGACTCAAGATAAGTGCCCACTTGTACTTCATGGTAGCCATAGTTTTCCTCGTGTGT TGCATTGTCTTTAGCAACTTGCAGCACAAGTTACCAGTCATGCAGCAGTATCAGCAGAGGCTTCTTCAGGAGAACAACAC CGTATGCTCAGGGACAAAATTTTGGGCAGTGGCAGCTAAAATTAAGGGACCAGCTTTTGGGATTTTCATAATCTACATAG TGACTCTGTCTATTTTCCCAGGATTTATTGCAGAAGATCTTGAATCTGAGCTTCTTAAGGATTGGTATCCTATTATACTG ATTACAGTTTATAATTTAGCAGATCTTACAGGGAAGTCATTAACTGCCTTCTGTGTTCCACAATCTATCACAAAAGCAAT ATGGGCTGCCACAACAAGGCTTCTTTTCTATCCAATGTTTGTAGTTTGTCTTCATGGACCAAAGTGGCTGAAAACAGAAG TGCCAATAGTGGTTTTGACATTTCTGCTTGGATTTACAAATGGGTACCTCACCAGTGTACTTATGATTCTAGCTCCCAAG TCAGTGCCCTTCTCAGAATCAGAGTTATCTGCTATTGTGATGATTGCGTTCCTTGGCTTTGGCTTGGTTGGTGGTTCAAT ACTTGGCTGGTTCTGGGTCTTATGATAGTCTAATAAAATGTGCAATAGAAAGTAGCAATCATTGTAACAAATCCATAAAC TGAGAATGGGATTTTAAATTAGTGTTATTATAAATAGTTCAGTCTTGTAACGAAATGCAAACAAGTCTCTTTAGCTGGAG TCATTACAATGAAGTTTCTTATTCTACAAGTATGATTACAATGTCATACAACACCTCTGTAAATTGAAGTACTTTTTCTT TAAAAATAAGAGTAATGTTATATCCTCCTACAAAAGCTCATACAAATCCTAAATGGAGAATGCATTAATGCATTTGGTAT CTTAAAAGTGTTAATAACATTTAATTCTTTCTCCATTTAGTATGTAGGAAGATATGTAGGATGATGAAGTAGGAAGATGT AGCATTACTCTTAAAAAAAGCAAAAACAAGTTCTGAACCTTCTGATTATCATGAGTTTCACACAAATAAAGCAAGAGGTA GCAAATTCCCAATTGATAAACATTATTTTCAAACATCATCCCACCCAATACGCCTACCAATTTTGATTTGTCTAAACATT ATGCCAGCTGTCTAAAAAAAATCAAAATCAGCAACCTTCTTAGTGTGAACAATATAACCCAAAAAAATGTGCAAGTATCC TTATTCTTGACATAATACAGCTATACAAGCATGCCAGAAGATAGAGACTTGACAATTCAAGCAAAAGGCATAGGAATGCA TCTTTTATTCTCCTGTATTCCTACCAGAATCTACATTGACAACAAGGTGAACACAGAACATTACAACTATATTCGTCGGC CAAAAATACTACAAGGTCAAAGTAGTATAAACAAAGGTTAGATAGTCATATGAAAGCTAGACACCAAAGGCAGCACGTAA CTTAAGAAGCAGCGGCTAAAGGGGGAGGAGGCGGCGGAGCAGCAGCTCCATGGAAGAAACTGAGAGACTTTTCAGAGGAA TTTTCTTGCTCTACATCATCGTCTTCCTCAGCATCCCAAAGAAAATGTGCATATGATGCTAGAACATAACTGCAACAGCA AAAACAAGCAGTTTGTTAATTCACATAATGAACTATAAACTAAACAAAAAACAGGCATGTTAATAGCGCGCTATAGCGGT GCAATAGTGCTATAGCGTAGCGCCCTGGGGTTCACCGCTACTCCACTATTATCCGCTATAGCGCTCAAAATATCATATTT TGGGCTTCCCGCTATGCTATCCGCCATTAACAACCCTAACAAAAACTACCTTAGCATTAACAGATTATGATTTAGTCCTT GAACTATTTGATTATTGGCAATTTCAATTCAATTCATGCAATCATTTCATTCCAAATGAATTGTTTTCACAATTCTCTAA CTAATATTCCAAATAGAGCTAAAGTTGTTTCTTACCAATCATCAGGGGAAGCTTTCACTGCTTGATCATAGTATGTCTCA GCTCGAGTAGCATCCTTATAGCTCTCCCATATCAAATCTGCATACATGGACATAACTTCCCCATCATTTGGATTCGCCAA AATTGCCTTCCCACAATACTCTTCTGCTTTCACATAGTCCAAACGAACCTTCATCATCACACAAATCATAATCAATAATC AATTACCCATTTGCAAAAGAAGGTTCTCTTCACATACCTCTTTCAAGTACCTTGCGTAGTTGCTAAGAAAAAGCGGGTTC CCTGGATTGGCTTCGATCATCGTCCGGTAATACAAGTCCGTACTATCACTCCCATGATTCTTATCCCAAAACCCAGAACC TCCACCGTCGCTCCGGTCCCATCCACCGCCGCGGCCTCCTCCGCCTCCGCCTCCACCCTCAACCAACACACGCGACGCCA GCAGACCTTCATCCCTTACACCAATCCCGCTCACACCTTCCTCCAGCTCGGAGAAAGAAAACAACGCAGGACCCAACGAC GTCGTTCTCGAACGGGCAGCGAGGGTGCTCGCTTTACCCTCGTCCTCATCGAAGAGGCCGTGGCTGGGAGGCTTCCGCTT CGGTGCGGCGGTGAGATCGGTTTCCGATAGCGCTCTTGTCATTCTGCTCCGGCGACCTTCGATCGGCGACCAGGAACCCG AAAGCGTGACGGATCGGGTTCTCGGGATCCGATGAAGGTGTTCGGGTTCGGTAGATGGATCCTTCGAGTGAGGAAGGAAC GAGTTCATGATCGGAGTTGAAGAGATTTGAAGAAGCATTGTTGCTATGGTGGATCTGGTTCGAGAATCTGAGTTGAATCG GAATCGGAATCGGAATCGGAATCGGAGAACTCGGTGGCTGACTCACTCACTGGTCAGAGAGAAGAACGCACTGGTTACGC GTCTTTTATAGTGGAAGGTGGGAGTTGATCTCAACAGTTGATATTTCATCGAGTAGGGCCAGTTGTTTTGGCGCCAAGCG TGTAGAGTCACGTGATATGGGGCCCTTTGGTGGAGATTTGAAGCCGTTGGATCTGGTTGGACGGTGGTGATGAATGGATA TGGGGCCCTACGTTGGGGAAAATGATATGAAGAATCAAAAGCTGGGTTGTGGAAG
CDS sequence (LotjaGi4g1v0272200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGCTGTGAAGCTGGTCTCTAGTGATGAGAGAACAGACACTTACAGAGTTGCTTACATAATCCATTTCTTGCTTGG TGCTGGAAACTTGCTTCCTTGGAATGCCTTGATCACAGCAGTTGATTACTTCTACTACCTCTACCCGACTGAACACATCG AAAGGGTTTTCTCGGTGGCTTACATGATTTCATCAGTGCTGGTGCTTCTTGTGATGATAAGTTGGAGAAGTTGGAGCAAA ACAACATTGAGGTTGAGATTGAACTTGGGATTCTCCATGTTTGTTGTGTCTCTAATGGTAGCGCCGGTGATCGACTGGAC CTCCAGCAGCACCAGTCTGGAAGAGAGACCGAGCGGTGCCTTAGGTTTGACAGTTGCAGCTGTGGTAGTGTGTGGTTTAG CAGATGGCTTGGTAGGTGGAAGCTTGATAGGATCAGCTGGAAAACTCCCCAAACAGTATATGCAAGCTGTTTTTGCAGGA ACTGCTTCCTCAGGTATTATAATTTCAATCTTGAGGATCATAACCAAGGCATCACTCCCACAAACCCCAAAGGGACTCAA GATAAGTGCCCACTTGTACTTCATGGTAGCCATAGTTTTCCTCGTGTGTTGCATTGTCTTTAGCAACTTGCAGCACAAGT TACCAGTCATGCAGCAGTATCAGCAGAGGCTTCTTCAGGAGAACAACACCGTATGCTCAGGGACAAAATTTTGGGCAGTG GCAGCTAAAATTAAGGGACCAGCTTTTGGGATTTTCATAATCTACATAGTGACTCTGTCTATTTTCCCAGGATTTATTGC AGAAGATCTTGAATCTGAGCTTCTTAAGGATTGGTATCCTATTATACTGATTACAGTTTATAATTTAGCAGATCTTACAG GGAAGTCATTAACTGCCTTCTGTGTTCCACAATCTATCACAAAAGCAATATGGGCTGCCACAACAAGGCTTCTTTTCTAT CCAATGTTTGTAGTTTGTCTTCATGGACCAAAGTGGCTGAAAACAGAAGTGCCAATAGTGGTTTTGACATTTCTGCTTGG ATTTACAAATGGGTACCTCACCAGTGTACTTATGATTCTAGCTCCCAAGTCAGTGCCCTTCTCAGAATCAGAGTTATCTG CTATTGTGATGATTGCGTTCCTTGGCTTTGGCTTGGTTGGTGGTTCAATACTTGGCTGGTTCTGGGTCTTATGA
Protein sequence (LotjaGi4g1v0272200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEAVKLVSSDERTDTYRVAYIIHFLLGAGNLLPWNALITAVDYFYYLYPTEHIERVFSVAYMISSVLVLLVMISWRSWSK TTLRLRLNLGFSMFVVSLMVAPVIDWTSSSTSLEERPSGALGLTVAAVVVCGLADGLVGGSLIGSAGKLPKQYMQAVFAG TASSGIIISILRIITKASLPQTPKGLKISAHLYFMVAIVFLVCCIVFSNLQHKLPVMQQYQQRLLQENNTVCSGTKFWAV AAKIKGPAFGIFIIYIVTLSIFPGFIAEDLESELLKDWYPIILITVYNLADLTGKSLTAFCVPQSITKAIWAATTRLLFY PMFVVCLHGPKWLKTEVPIVVLTFLLGFTNGYLTSVLMILAPKSVPFSESELSAIVMIAFLGFGLVGGSILGWFWVL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 19 | 19 | - | – | |
PIRSF | 2 | 397 | 396 | 7.0E-56 | ||
PANTHER | 10 | 397 | 388 | 1.3E-143 | – | |
PANTHER | 10 | 397 | 388 | 1.3E-143 | ||
TMHMM | 19 | 41 | 23 | - | – | |
Phobius | 20 | 46 | 27 | - | – | |
Phobius | 47 | 57 | 11 | - | – | |
TMHMM | 56 | 78 | 23 | - | – | |
Phobius | 58 | 75 | 18 | - | – | |
Phobius | 76 | 86 | 11 | - | – | |
TMHMM | 85 | 107 | 23 | - | – | |
Phobius | 87 | 108 | 22 | - | – | |
Phobius | 109 | 119 | 11 | - | – | |
PRINTS | 116 | 136 | 21 | 6.5E-7 | ||
Phobius | 120 | 144 | 25 | - | – | |
TMHMM | 122 | 144 | 23 | - | – | |
Pfam | 126 | 226 | 101 | 5.2E-22 | ||
Phobius | 145 | 155 | 11 | - | – | |
Phobius | 156 | 175 | 20 | - | – | |
TMHMM | 156 | 175 | 20 | - | – | |
Phobius | 176 | 189 | 14 | - | – | |
TMHMM | 188 | 210 | 23 | - | – | |
Phobius | 190 | 210 | 21 | - | – | |
Phobius | 211 | 245 | 35 | - | – | |
Pfam | 235 | 396 | 162 | 8.8E-36 | ||
TMHMM | 246 | 268 | 23 | - | – | |
Phobius | 246 | 266 | 21 | - | – | |
Phobius | 267 | 277 | 11 | - | – | |
TMHMM | 278 | 300 | 23 | - | – | |
Phobius | 278 | 302 | 25 | - | – | |
Phobius | 303 | 308 | 6 | - | – | |
Phobius | 309 | 333 | 25 | - | – | |
Phobius | 334 | 338 | 5 | - | – | |
PRINTS | 336 | 352 | 17 | 6.5E-7 | ||
TMHMM | 337 | 359 | 23 | - | – | |
Phobius | 339 | 360 | 22 | - | – | |
PRINTS | 355 | 371 | 17 | 6.5E-7 | ||
Phobius | 361 | 371 | 11 | - | – | |
Phobius | 372 | 396 | 25 | - | – | |
PRINTS | 373 | 397 | 25 | 6.5E-7 | ||
TMHMM | 374 | 396 | 23 | - | – | |
Phobius | 397 | 397 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Nucleoside transmembrane transporter activity | Enables the transfer of a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide) from one side of a membrane to the other. | ||
Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
Biological process | Nucleoside transmembrane transport | The directed movement of nucleoside across a membrane. |
Expression pattern of LotjaGi4g1v0272200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…