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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0272300 |
| Transcript ID | LotjaGi4g1v0272300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | YABBY transcription factor; TAIR: AT2G26580.1 plant-specific transcription factor YABBY family protein; Swiss-Prot: sp|Q8GW46|YAB5_ARATH Axial regulator YABBY 5; TrEMBL-Plants: tr|C6SYG8|C6SYG8_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi4g1v0272300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:63958920..63963211) extracted from Lotus japonicus Gifu genome v1.2.
CTCCCTCCTCCATCCCCTTCCCTTTCTCTTTCTCTCTTAGGATTCCAAACAAACCCTTCTTCAACTTCTTTCTCCCACTT TTTACCCTAACCTTTTATATATACAACAAGCCCTTCTCCTAGTTTTACTGTTTCCAATATTATTATATATATAAACACAC ACACATGCCCGGTATCTAAGAAAGAGAGAGAATACAAGGCCTTTGCTTTCATTTCTGGTGTCTAACATATTGCAATTAGA GAGCTATCTAGTTAGCTTCTTCCATATTCTTCTTCTCCTTTTCTTATCCCTTCTTCTTTCACCTCCTCCTTTCAGTAGAG AAGCTTGAGAGACATGTCGACCTGTGGCATCATCGATGTTGCGCCTGCTTCTGAGCAATTGTGCTACATCCCTTGCAACT TCTGCAATATTGTTCTTGCGGTAGTATATATATCTTTGATTTCAAATACAACAACTCTCTAGCTAGTGCATGTTTGTACA TCATTTTGGTTCTAAAGTTAAAATCAATTTTGGTAAGAGAAGTTTCTTGTGAGTTGGAGCTTCTGAGATAAAAAGAAATG ATTCTAAAGAGAAGTTGATCCAAACATGCTTTGTTTAGAGGGGGATATGTTTTTCATCTCTTGTTAATGGTTTCAAATAT ACTACTATATAATTATAAGCACACTGCAAATGCATACTTTTGATTGTTTTTGTTTTCTTTCTCATGTTATATTCAAGGTC AAAAGAATTCATTCAGATCCTGAAAAAAGAAGCTATGTTGTGTGTGTTGTGAACAAGTTGAATCAATTCTTCTCTCTTTC TGTGCTTCAATGTTTTTTATTTTACAGTCAGGTCTCCATCTCTCTGGACTTTTCTTTCTTTCTTTTGCAGTCATAAATTA AAAGTCATAACCTGAAGGACCTCTTCTTCTCCCTTTCTCTGTCTTAATTAGCAAGGGCATGTTTGTTTGGGTGTGGCTGA ATTGTGCCCCTATGCTATGCTAGAGCTAGCTAGCTGTGTTTGATAAACATGGAGGCTAGGGTGTCCTGGCCCTTGAAAAC GCCAAAACAGCCACTATACATGATAAACTGTCTTGATAGGACAAGTCCTTTGATTTCACATCTCCCACCTGCATGTGAAC TAAACTACACACCCCAGGTGCTATCTGATCAACTTGGCTTCTTTATGATTCCAATTTTAATACATAATAAAAGAATAAAA CCCTTGTAAATTTCATCAATTTCCTTTCTTTTTCAAGTAAAAAACCAAGCTGCACCCTATTTCTCAAATTCTTACTAAAT ATGTTTCATATTTAATTTGTCCTTTTCAAATTAAATCATCACCCCAAGTATTCATGAAATCATGTTGTGATCTGTTTTTT TTTTAATGTGTGTGTGTGCTTGCTTGGTGTATATAGTACAAAGTACTATTATTGTTATATAATTAGAATGGAATGAGAAA TAATTAATAGTGGTTGTTGAATGTTGTTATTATTGAATGATGCAGGTGAGTGTTCCATGCAGCAGCCTGTTTGACATCGT GACAGTCCGATGCGGGCACTGCACTAATCTTTGGTCTGTCAACATGGCCGCTGCGTTTCAATCACTCTCATGGCAAAATC TTCAGGTTAATTCAAACACATTACATTACATTCACTCACATTCCTCAGCTTCTTGTGATGTGATCCTTTCCATGCTTCAA TTCAAAGCTTTTAGTTTTTCCATTATCAGTTTCTCTATTACCAGAATCAATTCTAAAACCGAAACGCTATTAACAGAATT TTCTGTCTAAAATTAATTATGACTTTGTATTTAATTAGTTAAGAAAAAGAAAAATTAAAAAGTAGACTATTACATGTAAC TAACACTGAAAAGCTAAAGTAAATAAATAAATTAATTGGCAGTTAGGCTGGCATTGATTTCTGGATCCTAGGGTTTCTTT TTTGAGAAAATCGAAGCCTCACTCTCAGGTAGGTTTCTGTGTGTGCTGAGTATCTAGCATTTCAAAGCATCTCTGTCACT TCCAAGTTCTACCTGAGAGCCGTAGCTAGTAATTACCTGCAGCCGCCATAGACATTAAAAACCTATTTACTTTTTCTTTG TCACTTTTTGTTATAGAGGCGTCAGAAACTGTCTTCTTAACTCCATCAATGGCAATGCCAAAGCATACTGAAAGATATAT TTAACTAAGAGCTTTTGGATATTACCTTGTGGATTGATTTGATTTGATTGAAATGAAAAGTATCTAGTTTGTTACTAGCT AGGTTTCATGATTTCTTTTCAAGTTCATTGTCCTCTGCAACCCAAACAACCCTATTTAGAGAGGTATCTCTAGCTTAGCT TGGTGTAGATCCCTAAAATCTAAGGCCCCTTCATTTCAACAACTGTCAACCTGGGTTTTCTCTGTGATTAGTTGCATTCT CAGTGATTATAAAGGGACTTTCGTTCCTCTCTATGATAAAGCATGCATAATTTCTCTGAAGAAAGCATATGCATTGATGA ATAAAGAAAGAACAACATTTATTTTATAATTAATAAAAAATTAATTGATCCCTCCCTCATCTTCCTAGGCTTTTCCCTAT CCATCATGCCACTTCCACTGAACATGAAACATTTGATTATGAATTTGTTACTTTATTATGTTTATAGATTCCTCATTCAA TACTAATGTTGTTTAGTTTCATTTACAGGCTCCTGGCCACTGCAACCCAGAGTACAGAATTGACACGGGCTCCACTTCCA AATGCAACAATAGGCTTGCAATGCGTGCTCCCACCACTCATCATGTCACTGAGGAAAGGATTGTCAACCGCCGTGAGTAG ACATTCAAATTTTAGAATTAATTCTGAAACTCAGAAGCTACTCACATAATTTTTTTATTCTGAATTTAAAATTGAAGAAC TTTCAAGCATACTTACTTATTACTTAATATCCATTCTCTAATTAATTTCTAATTCATCATAGCCACATATATAGCTTTTA TTTGAATTTTTAACAATATTAAATGAGATTATTGACAATGTTACTTACAATTGATATAATATTGATATTAATTATGAGTT GTTATTTTCTTTTCCAGCTCCCGAGAAGAGGCAGCGTGTACCTTCTGCTTATAATCAGTTCATAAAGTATTACTACTAGC TGCATGCCTATACTATATATTCAATTCAAGTCAATTCAATTGGCAACATAAAAGCAGCTCTGAAACGTCTTTGTTCATAT TTGCAGGGAAGAAATTCAGAGGATCAAGGCTAACAATCCTGATATCAGTCACCGAGAAGCGTTTAGCACAGCTGCAAAGA ACGTAAGGACCAAAATTAAATTTAATTATCAGAAAATTATGAATTAGATCTCTTTAAAAATATAATAACTGATTATTTTA TTTTCAGTGGGCACATTTTCCTCATATTCATTTTGGGCTCATGCTGGAGAACAACAATCAAGCTAAGATGGACAATGTAA GTATTTTCAGTGGGAACATTTTCCTCATATTCCACTTTGTGTATTACATAGATTAAGAGAGAATGAATGATTATGATCCC CAATGTTGAGCTATTGCATGTTACTTTTTGCACCAAATTAACAAAGAAATGGGGGCAAAAATAAAATTCTTTCAAGTATA AAACTACAACAAATTTATTTAACAATAAAGAATTTATATTTATATATTTTATATTATTTTAAAATTTTAACTTGTTATAC TTAGATAATTCATGCAAAAAATTTCTTAAAACTATAATGCATGTATTGTTGTGTAAAACTTCATCTGATGAGATGGTATT TGATTATATTCAGGTCTCTGAGAAGCATTTGATGTCAAGGGCTGCGCTGTTGAACAAATGAAAGCTATCTTAACCATATC TAAGGACTTCATTTTCGTTTAATCTGAGTCTTGTCACAAGAAACAATATTAATTGTCCTCTCTATTAAGGACAGTTAGCT CTTTTTTCGTTAATCATATCAGTGTACTTGTCACTGTTTGCTACTTGTTTAGTGAATGTTTTTAATTAATTAATATCAAG TCAGAATGCTACAATTTCGCTTTTCATTTTTAGCAAGTTCTATTATGTTCTAGCGGATTCAGAAAATGCCACAATGGATA AACAGGTAAACTGATGTAGGAGCTTTTTAAGATAATTTTAGTATTTTAGTAATTTTACTTATTTGTAATTAAGATCTTTT AGGATCTTAATTATTTTTTGTTAGGAACTTATTTATTTTCAATTAGGATCTTTTATTTTCAATTAGGATCTTTTAGGATA TTATTTATTTTACTATTAGGATATTTTCTTTTCTTATTTAAGCACTTGTAAG
CDS sequence (LotjaGi4g1v0272300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGACCTGTGGCATCATCGATGTTGCGCCTGCTTCTGAGCAATTGTGCTACATCCCTTGCAACTTCTGCAATATTGT TCTTGCGGTGAGTGTTCCATGCAGCAGCCTGTTTGACATCGTGACAGTCCGATGCGGGCACTGCACTAATCTTTGGTCTG TCAACATGGCCGCTGCGTTTCAATCACTCTCATGGCAAAATCTTCAGGCTCCTGGCCACTGCAACCCAGAGTACAGAATT GACACGGGCTCCACTTCCAAATGCAACAATAGGCTTGCAATGCGTGCTCCCACCACTCATCATGTCACTGAGGAAAGGAT TGTCAACCGCCCTCCCGAGAAGAGGCAGCGTGTACCTTCTGCTTATAATCAGTTCATAAAGGAAGAAATTCAGAGGATCA AGGCTAACAATCCTGATATCAGTCACCGAGAAGCGTTTAGCACAGCTGCAAAGAACTGGGCACATTTTCCTCATATTCAT TTTGGGCTCATGCTGGAGAACAACAATCAAGCTAAGATGGACAATGTCTCTGAGAAGCATTTGATGTCAAGGGCTGCGCT GTTGAACAAATGA
Protein sequence (LotjaGi4g1v0272300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTCGIIDVAPASEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQNLQAPGHCNPEYRI DTGSTSKCNNRLAMRAPTTHHVTEERIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIH FGLMLENNNQAKMDNVSEKHLMSRAALLNK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 188 | 188 | 4.4E-99 | – | |
| PANTHER | 1 | 188 | 188 | 4.4E-99 | ||
| Pfam | 12 | 163 | 152 | 8.6E-70 | ||
| SUPERFAMILY | 107 | 156 | 50 | 4.84E-8 | ||
| Gene3D | 113 | 187 | 75 | 1.5E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Multicellular organism development | The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). |
Expression pattern of LotjaGi4g1v0272300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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