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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0272700 |
| Transcript ID | LotjaGi4g1v0272700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glucan endo-1,3-beta-glucosidase, putative; TAIR: AT2G26600.1 Glycosyl hydrolase superfamily protein; Swiss-Prot: sp|Q9ZQG9|E1314_ARATH Glucan endo-1,3-beta-glucosidase 14; TrEMBL-Plants: tr|A0A1J7I016|A0A1J7I016_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0272700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:64040474..64041684) extracted from Lotus japonicus Gifu genome v1.2.
GTCTGCTACATCATGTTAATGGAGTTTTACCTCACTCTTTGTTTTCCAGCGTCAGTGCAAGCGTTCACCGGGACTTACGG CATAAATTATGGGAGAATTGCAAATAACATCCCCTCTCCTGATCAAGTTGTTACTCTTCTCAGAGCAGCAAAAATAAAGA ATGTTAGAATCTATGATGCTGATCACAGTGTTCTCAAGGCCTTTAGCGGATCCGGGCTTGAACTTGTAATTGGAGTTACC AATGGACAGTTGCAAGACATGAGTTCGAATGCAGATCATGCTTTGGACTGGGTGAAGGACAATGTCCAGGCATTTCTTCC CGGGACAAGCATTCGTGGAATTGCCGTGGGCAATGAAGTCTTGGGTGGGGATGACCAATCTTCGTGGGGATTTCTTTTGG GCGCTGTGAAAAATATCTATAATGCTACGAAGAAACTTCATCTGGATGAGCTAGTTCAGATTTCTACTGCCAGCTCATTT GCTGTTTTTGCCGATTCCTACCCTCCTTCGTCTTGTGTATTTAGAGATACTGTTAAAAATCAGTATATGAAGCCGCTATT GGAGTTCTTCCAGCAAATTGGCTCTCCTTTCTGTTTGAACGCGTATCCTTCCCTAGCCTATGCAAGTGATCCAGAGCATA TTGATTTAAATTATGCTCTTTTTAACCCAACAAAGGGAATTTATGATCCAAAGTATAAGCTGCATTACGATAACATGCTT GAGGCTCAGATTGATGCAGCTTATACTGCTTTGGAGGATGCTGGATTTCACAAAATGGAAGTCATAGTTACAGAGACAGG GTGGGCTTCAGATGGAGACCAAAGTGAAGCTGGAGCTAACATAACTAATGCAAGGACGTACAATTATAACCTACGTAAAA GGCTTGCGAAGAAGAAAGGAACCCCGCACAGGCCTAAAAATGTTATGAAGGCATACATATTTGCAATTTTTAATGAGAAT CAGAAGCCTGGTCCTTTCTCCGAGAGGAACTATGGACTGTTCAAGGCTGATGGGAGTATATCATATAACATTGGGTTTCA TGGGCTTAATGCTGGAGATTCATCTCTTTTGTCTCTTAAGGTACCCTAAATTTCATTTGATGCTATATTGTTTGATTTTA AGCTCATTTAGAACTTTTCACTACCCAAACAAAGAGAAGGAAAGAGGGGTGGGATAGGAGTTTTATAAAACAGTTTCAAT GAATCTGTTAG
CDS sequence (LotjaGi4g1v0272700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTAATGGAGTTTTACCTCACTCTTTGTTTTCCAGCGTCAGTGCAAGCGTTCACCGGGACTTACGGCATAAATTATGG GAGAATTGCAAATAACATCCCCTCTCCTGATCAAGTTGTTACTCTTCTCAGAGCAGCAAAAATAAAGAATGTTAGAATCT ATGATGCTGATCACAGTGTTCTCAAGGCCTTTAGCGGATCCGGGCTTGAACTTGTAATTGGAGTTACCAATGGACAGTTG CAAGACATGAGTTCGAATGCAGATCATGCTTTGGACTGGGTGAAGGACAATGTCCAGGCATTTCTTCCCGGGACAAGCAT TCGTGGAATTGCCGTGGGCAATGAAGTCTTGGGTGGGGATGACCAATCTTCGTGGGGATTTCTTTTGGGCGCTGTGAAAA ATATCTATAATGCTACGAAGAAACTTCATCTGGATGAGCTAGTTCAGATTTCTACTGCCAGCTCATTTGCTGTTTTTGCC GATTCCTACCCTCCTTCGTCTTGTGTATTTAGAGATACTGTTAAAAATCAGTATATGAAGCCGCTATTGGAGTTCTTCCA GCAAATTGGCTCTCCTTTCTGTTTGAACGCGTATCCTTCCCTAGCCTATGCAAGTGATCCAGAGCATATTGATTTAAATT ATGCTCTTTTTAACCCAACAAAGGGAATTTATGATCCAAAGTATAAGCTGCATTACGATAACATGCTTGAGGCTCAGATT GATGCAGCTTATACTGCTTTGGAGGATGCTGGATTTCACAAAATGGAAGTCATAGTTACAGAGACAGGGTGGGCTTCAGA TGGAGACCAAAGTGAAGCTGGAGCTAACATAACTAATGCAAGGACGTACAATTATAACCTACGTAAAAGGCTTGCGAAGA AGAAAGGAACCCCGCACAGGCCTAAAAATGTTATGAAGGCATACATATTTGCAATTTTTAATGAGAATCAGAAGCCTGGT CCTTTCTCCGAGAGGAACTATGGACTGTTCAAGGCTGATGGGAGTATATCATATAACATTGGGTTTCATGGGCTTAATGC TGGAGATTCATCTCTTTTGTCTCTTAAGAACTTTTCACTACCCAAACAAAGAGAAGGAAAGAGGGGTGGGATAGGAGTTT TATAA
Protein sequence (LotjaGi4g1v0272700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLMEFYLTLCFPASVQAFTGTYGINYGRIANNIPSPDQVVTLLRAAKIKNVRIYDADHSVLKAFSGSGLELVIGVTNGQL QDMSSNADHALDWVKDNVQAFLPGTSIRGIAVGNEVLGGDDQSSWGFLLGAVKNIYNATKKLHLDELVQISTASSFAVFA DSYPPSSCVFRDTVKNQYMKPLLEFFQQIGSPFCLNAYPSLAYASDPEHIDLNYALFNPTKGIYDPKYKLHYDNMLEAQI DAAYTALEDAGFHKMEVIVTETGWASDGDQSEAGANITNARTYNYNLRKRLAKKKGTPHRPKNVMKAYIFAIFNENQKPG PFSERNYGLFKADGSISYNIGFHGLNAGDSSLLSLKNFSLPKQREGKRGGIGVL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| SignalP_EUK | 1 | 17 | 17 | - | – | |
| Phobius | 7 | 18 | 12 | - | – | |
| PANTHER | 9 | 360 | 352 | 3.2E-195 | – | |
| PANTHER | 9 | 360 | 352 | 3.2E-195 | – | |
| Phobius | 19 | 23 | 5 | - | – | |
| Gene3D | 21 | 349 | 329 | 1.5E-115 | – | |
| SUPERFAMILY | 22 | 341 | 320 | 4.35E-86 | ||
| Pfam | 23 | 342 | 320 | 7.0E-84 | ||
| Phobius | 24 | 374 | 351 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi4g1v0272700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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