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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0274100 |
| Transcript ID | LotjaGi4g1v0274100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-directed DNA polymerase (reverse transcriptase)-related family protein; TAIR: AT3G25270.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A0B2QNM3|A0A0B2QNM3_GLYSO Uncharacterized protein; Found in the gene: LotjaGi4g1v0274100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:64342118..64348151) extracted from Lotus japonicus Gifu genome v1.2.
TTGCACCAAAGACTCACTCCTCTCTCTCTCTCACACACGGTCACACACGCATTCACACAGTCAACCCTAGGTCCCAAGCA CACACGCACCATCGGCCACCACCACCAAGCCATCACCACGGCACCACCAGTCCACCACGCTCAGCCCAAGCCCCAGCCGT CACCACTCTCTTTGATTCTCTTCTTTAATCAATCTTCAGGTACTACACTTCACCCACCCCCAAATCTTCATCAATTTTTT TCAGATCTTCTCTCATTGCATTCAAACTCTTCATGGCTATTTCTTCGATTTCGGTTCTCAGTATGCTATATTTGATATCA GATTCAGATTTCGTTCTTGTTTTGTACATTGCAATATATGGATGGATCTCTCTTCATGTTTGCATTTTCATGGTCATGGA GATCCATCACTCCTGTGTTTCTCTTTCCCTTAGATCCAGAAATTGCGTCTTCAATTTTTCATAGGTTAGTCTAAGGAGTC ATTCAAACCCACAGAATAGAAACACCGAACATAGACTAGTCTTATATATAAGTTCTTAATGGATTTTGTTGTAAATTCAA TTAACGAAAATATTGAGTCTACTGGAAGGGAAGGAAAGAGTTTACTGGAAGGGATACAACTCAAGGCTTGACATTGGCTA ACAGGGAGGGAAAAGGGATTTCACTGCTCATTTTATGAATGGTTGTCACAACCAATTTTATGCCTCAGAACCATTCTTAG TGACCTGCTTGCTCTGTTTATTCAATTGGAAAGTGGTCTGATTCGAGTGGAATTAGAAGACCATATTGAGTTTGTTGTTG AGGTGATTTGGTATTCTAGCGGCTGGGTGCTTTAGAGCTTTGTTTGGAGCTTTTTTATACTATCTCGATCATCTTATGGT GTTGTTTGTTGGGCAGAAGTTCTGTTCCTTTGTTAAATTATGCAAAGTGAACTAATGATGGTTCTGTTTCTTCTTTTTCC TTTGTCTGTCATTGTTTGTTTTCAATTCTTTTTTCCCCTTGCCTTTGTGCTGGGTGTTTTGGTGACTATGTAATTGGTGG CACCCCTTGTGCCTTTTAATCAATTAATGGCTTACCCAAAAAAAAAATTGGCTTATCTAAAAATAAAATTCTTCTTTGTG TTTCTTGTGAGACTCTATTAGATCAAAATTAAGAGCCTCATGTTAGACTATGTTCACTTTCAATTTCCATTTTCTCAATC CCCAAATTAAGAGCCTCATATTAGACTATTATTGAGAGTGATGTATTCTATAATATTGACTGCTTATTGTTCAACGATTT TAGAATATTAAATCACGTAGACGATAACTAAAAATTTGACCCCCCTGACCTCGGGGTCCTGGATCCGCCACTGCATGAGA CTAATATTATTTTTATAAAGTCATGAGACTGAACCTCTCGGGATTTGGATATTACATTAAATGAGTAGTCTGTGATAATA AATCATCCCGATCCATACATATTGCATGCCTAGGGATCGAAGTCTGAACTAAATGATTTAAATATCCAATTATCCATCAG TTGTGTTAAACATTGTTGATACTTGATAACGTCGAACCAAACATTAGTAATATTTACATATGTCAGACTATGTCAGGTGC AGGTAGCCATAGTTGCCATAGGGCGGTGTAGCTGAGGGGTGCGGAGGATGAAGCTAGGAAGATTTGGGACTTGGGGAAGG AATTTGGAGTTACTGCATGTGGGGATGAAGGGGTCGTTTTATCAAAATTAGTGGACATGGAGCACCGGGATGCTCTTGAG GCAGGTAACTTGGCTGGTGTAGAATCAAGGAGGAGTGATGTTGGTGTCCAATGAAGATTTTATCATATAATGTGAGAGGG TTGGGGAGCAGGGCGAAGAGGCGGATAATCAGGGAGCTAGTCATGAAAGAACAGATAGATATGTTGCTCATACAGGAGAC AAAGCTTGAAGATCTGGATGTACAGTCATGTTCTCAGATATGGGGAGATGTGGCTTTCGAATGGCAGGTTTCGCCGGCAG TAAATCGGGGAGGTGGACTCTTGTGTATTTGGAAGAGGGGTGTCTTTATACTCAACAATTGTGTAAGGGGCCAAGGTTTC CTGGGATTGGTAGGGACCTGGGGGGATATGGCTGAAACTTCTATGGTGGTGAATGTATACTCGTCTTGTCGACTTGAGGA GAAGAGACAGTTGTGGCGTGATCTAATTGATTGGAAGAATAGGAGTGGAGTGCATCTGTGGTGTATAGGCGGGGATTTTA ATGCAATACGAGCAGATTGTGAACGAAAGGGAGTATCATCAGAGGGGGGGTTCACAGAGACGTGAAACTGCAGAATTTAA TTCCTTTGTTGAGGCATTGGAGGTACTGGATTTACCATTGGCTGGTCGCAAATATACCTGGTATAGGCCGAATGGTCAAG CCCAGAGTCGCATCGACAGATTTTTGTCATCTCCGGAATGGCTTATGCAATGGCCTAACTGTGAACAGGTGGGTCTTAGC AGGGATATTTCAGATCACTGCCCGCTGTTATTGCGGTCTACTTCCCAAGATTGGGGTCCAAAACCATTCAGGGTGTTAAA CTGTTGGATGCAACATCCTGGATTTAGTGAGTTTGTGGAGAAAGTATGGGTAGAAAATTCAGTAACAGGTTGGGGAGCTT TTGTTTTAAAGGAACGATTGAAAGGGTTGAAATCGAAATTGAAAGAATGGAATAAGGAGGTATTTGGGGATCTACGGAGC AAACGGAATGACTTGGTTCAACAAATTAATGATCTGGATCGTAAGGAAGAAGACATGGGGCTATCCAACGAAGAAATTAG CACTAGAAAGCTACTGAATGGTGAGTTCTGGGCAGTTCTCAAGCATCAAGAGTCTCTTTTGTATCAAAAATCCAGATCAC AGTGGCTAAAGGAGGGAGATCAAAATACCAGGTACTTCCACTCTTTAATCAATTGGTGTAGACGCTCTAATTCGATTGTA GGTTTGATGGTTGATGGAATTTGGGAGGAGGACACCATGAAGGTGAAAGATGAGGTTAAAAAACATTTTGAACAGCGATT TGCAGCAGCAAAGTGGGACAGTCCGAACCTGAATGGGGTGCCTTTCAAAACTCTATCTCAAGCGGACAATGTGATGCTTA CTGGGTTATTTGGTGAAGATGAAATTAAGGATGCGGTTTAGGATTGTGGCGGAGATAAAAGTCCTGGCCCTGATGGTTTC AACTTCAAGTTCATTCAGAAATTTTGGGCGACATTGAAAGCAGATTTTAGTCGGGTGCTTAATGAGTTTTGGAGCAGAGG GGTGTGGCCCAAAGGCAGTAATGCCTCGTTTATTGCACTGATTCCTAAAGTAAATTCCCCACAGGGCCTAAATGATTTCA GACCCATCTCTTTGATTTGGTGTATTTACAAGGTGGTCTCCAAGGTTTTGGCACTAAGGTTGAAGAAGGTGCTACCTAAA GTGATTGGTGGTAACCAGTTTACTTTTCTAGGAGAGCGGAATATGTTGGATAATGTGGTGGTGGTAAATGAGGCCATACA TGCTGCAAGGAAAATGAAGAAAGCAACGTTGGTCTTTAAAGTTGACTATGAGAAAGCCTATGATTCAGTGAGTTGGGAGT TCTTGGCATATATGATGGGGAGAATGCAATTTAGCAGGAAATGAATCCAATGGATTATGAGTTGCCTCAAATCGGCTTCT GTGTCAGTGTTAGTTAACGGGAGTCCGTGTGAAGAGTTTATGATGACTAAAGGCCTTCGCCAAGGTGATCCACTTGCACC ATTTTTATTTTTGATTGTGGCAGAGGGTCTTAATAGCTTATTTTCACAAGTCGTAAGGATGGAGAAATTCAAAGGGTTTT CCTTTGGCGAGGCCTCACACATAGATATCTCTATGCTTCAATTTGCAGATGATACGGTGTTCCTGGGCAATGCAACAATT CAGAATGTGCAGACAGTTAAATGTATATTGAGGTGTTTTGAACTCGTATCTGGCCTCAAGGTCAATTTCCACAAAAACAA ACTAGCTGGGGTGGCGGTTGATCAGAATAGCTTGGGGAGATTTGCAGCTATTCTCCATTGCAAATTGATGACCATTCCAT TTGTGTATTTGGGCATTCCAGTGGGGGGTAGAATGAAGAGCTTGGCGCTATGGGATTCGGTAATTAAAAAGGTGCGGGGG AGGCTCTCTTCGTGGAAACAGAAACATATATCCTTTGGAGGTCGGATATGCCTCATTCAGAGTGTCTTATCAGCTCTCCC ATTATTCTTTCTCTCTTTTTATAAAATACCAGTTGGGGTGTTGTCAATTTGTACAGGAATCTTGAGGAGATTTCTATGGG GAGGAGCTGAAGCTGATAACAAAATTAGCTGGGTAAAGTGGTCAGACGTGTGCAAACCTAAGGCTCATGGTGGGCTTGGC ATTAAGGACTGGAGATTATTTAATATGGCATTACTAGGGAAATGGAAATGGAGATTCTTGACTGAGCCGGATAGTCTATG GTGTAGGGTGGTCCAGGCAAATTGCAACTCTTGTGGGGAGTCATCTTGGTGGAAGGAAATTCAATCGATTACTGTTGATA ATGGTTGGCCTTGGTTTCAGGAAAGTGTGCTGAAAACGGTCTTTGAAGGCAATGTAACGCAATTATGGGCAGAAAATTGG ACGGGATCAGGGTCCTTGGAGCTTCGATTTAGGCGTTTGTATAACCTGTCATGCCAAAAAAGAGAGCAGGTGAGCAATAT GGGTAAATGGGTGAATGGAGTGTGGCAGTGGGCATTCCGATGGAGGAGGAATCTTCAGGGTCGTGAGGTGAGGTGGTTTG AGGAGCTGATGGTGATTTTGCAAGGGAGTAGACTGGTAGAGAATAAGAAGGATACATGGAGGTGGAAACTAGAGGCTGAA GGGGGATTTTCTGTTAATTCATCGTTTGTTTTTTTGTAGGATCAATATTTAGAAGAACCAGATCCTGTTTTTAATTAGAT CTGGATGGTGCCGGCTCCCTTAAATATAAAAGCATTTGTTTGGAGAGTTCTACTGGGACGTATTCAAACTCGCGACAATC TGCTAAAGCGGCAGGTAATCCACAATGCCTTGGACGCAATCTGTCCACTATGCGGGTTGGCAGAGGAATCAGGTTCACAC TTACTGTTTTCTTGTGCGGAATCAATGCTGATCTGGTATGAATGCTTCGCTTGGTTGGGTGTTTCTACGGCTCAAGTCTC GGATCCGAAAGTCCATTTATTACAGTTTTCTTCAATTGGGAGAAGTAAAGCTCAGAAGCTAGGGGAAACTACAATTTGGA TGTCAGTTTTATGGTCAATCTGGTGTCTAAGAAACAAGGTAATTTTTAATGGAGGTACGCTGGACAAGGATCAAGTACTG GAACAGATTCAAGTAACAGCTTGGGGGTGGCTAAGGACTCGGCTGGATGATTTTTCATACTCTTGGTATGAGTGGAAATC GAATCCACGTATTTGTTTGTTGTCTTTATAATCACTGGATTGTTATGGGTTGGATTGCTAGTTGAAATGCTTTGTTAAGG TGCCTATTAATATGCTTTGTAATCTGGTTCTGAGGTTAAAGAGGATAAAGGCTTGCGGTTCCTCTTTGCTATGACAGTGT TCAATTTGGCTAGCTCGTGGAGGATATAAAGAATCACGGTTCAATATAAAGCTGCATTATGTGTCTAAATGGTTTGGAGC AAGGATACTACTATCTGAGAGCAACTGTATAAGTTGGGATTGGGTTTTTATTGTAATTTCTCCTTGGGGTTTCATCTTGA TGTTAGGACACAGGTACTCTTTTTCCTTCACCAGGTTTTCCCAAGGGGGTTTTTCCTGGTAAGGTTTTAATGAGGCATGT TTTCTAATGTCTCTCCTCAAGTGGAGGGGGGGTTTTCTGTGAGAGTTGTGTCTGTTTTTGCAACTCTCTCTGCTGCTGTC TTTGCTTTAGCATTAGTTGTCCTTCATTTTCTTTTTCTCACTTTCTGTTGTATTGGGCTGAAGTGCCCCTTGTACTTCAT TTCAATATATTATTTTGGCTTAACAAAAAAAAAA
CDS sequence (LotjaGi4g1v0274100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGCCGGCTCCCTTAAATATAAAAGCATTTGTTTGGAGAGTTCTACTGGGACGTATTCAAACTCGCGACAATCTGCT AAAGCGGCAGGTAATCCACAATGCCTTGGACGCAATCTGTCCACTATGCGGGTTGGCAGAGGAATCAGGTTCACACTTAC TGTTTTCTTGTGCGGAATCAATGCTGATCTGGTATGAATGCTTCGCTTGGTTGGGTGTTTCTACGGCTCAAGTCTCGGAT CCGAAAGTCCATTTATTACAGTTTTCTTCAATTGGGAGAAGTAAAGCTCAGAAGCTAGGGGAAACTACAATTTGGATGTC AGTTTTATGGTCAATCTGGTGTCTAAGAAACAAGGTAATTTTTAATGGAGGTACGCTGGACAAGGATCAAGTACTGGAAC AGATTCAAGTAACAGCTTGGGGGTGGCTAAGGACTCGGCTGGATGATTTTTCATACTCTTGGTATGAGTGGAAATCGAAT CCACGTATTTGTTTGTTGTCTTTATAA
Protein sequence (LotjaGi4g1v0274100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVPAPLNIKAFVWRVLLGRIQTRDNLLKRQVIHNALDAICPLCGLAEESGSHLLFSCAESMLIWYECFAWLGVSTAQVSD PKVHLLQFSSIGRSKAQKLGETTIWMSVLWSIWCLRNKVIFNGGTLDKDQVLEQIQVTAWGWLRTRLDDFSYSWYEWKSN PRICLLSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 134 | 131 | 1.8E-28 | – | |
| PANTHER | 4 | 134 | 131 | 1.8E-28 | – | |
| Pfam | 4 | 64 | 61 | 1.4E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0274100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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