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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0275300 |
| Transcript ID | LotjaGi4g1v0275300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Telomere-associated protein RIF1; TAIR: AT4G32910.1 nuclear pore complex Nup85-like protein; Swiss-Prot: sp|Q6PR54|RIF1_MOUSE Telomere-associated protein RIF1; TrEMBL-Plants: tr|A0A0B2Q5E3|A0A0B2Q5E3_GLYSO Telomere-associated protein RIF1; Found in the gene: LotjaGi4g1v0275300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:64548231..64554342) extracted from Lotus japonicus Gifu genome v1.2.
CTAAAATAGAACCACTCTAAATTAAAATTAATTGAACTAAAATAGAAGAAGGTCAATGCGCAACTCCAGAACCGCGTTTT GGCGCGAAAGACTGCTTCTTCTTCCCGTAGAAGCGAGCGAGCGAGGGTTTGATAGCTCAGAAATCTCTGCAACTGCAAGA ACCAACAATGGCGGAAGAAGAGATCCATGAAATCCATACCCTGATTTCTTCAAACGACGACTCCAACAAGTGTTCAGGCT ACTCAACCCTTCTGCAATTCCAACAACACTCTTGCCTCAACCCTTCTTCCCTCCAATCCCTAGCTCAATCCTCCATTTCC GTAATCTTTTCCATGCTCTCCGATATCTCGCACCACGATGAAGAAATGTGAGCACTCACTTCCACTTTCTCTCGATTCAA TCATTCAAATCAAACCTATTTATTTATGTATTTTTCATAATGTTTATTTAATTTACTTGCTTGTTAGAGCCGCACAAGCG TTGAAGTGTTTGGGATTCATGATTTATCATCCCTCCGTCGTTTCCGCGCTTCGAGGTATCTGGTTTTGCTCTCAACTATG CCATTTGATTCACTTTGATTTTTATGCAGCTTTAATTCTCTCTTGGTTTTGTAGTGGATGATGCCGATTCGATTTTGTGC TCATTGGCTAAACTTATTACAACCACAAAATTGAAGGCTAGTTGTATATTCTGTTTTTTTTTACTTTGATCATTGTTCTA GAGTAGAGAGTTTTTTTCTGTTTCTTAGTTGCATTTGCACTATAGTTGTATTAACTTTGTTAAATACTTTGCTGCAGTCT GCTTGTAATTTAGGGGTATGGTGCTTATCTGTCCAACAGTTAGGTGCATCGTTGCTCGTTAATCACTTTCATTCTTTGTT GCGGGCAATTGTTCATGCCCTAGATAATCCAATGGGGTCTCTGTCAACAACATTTGAAGCTACCCAGGTATAGTTCCCTT TCATCAAAAAAATTCTTCAGTGTTTGGGCCCTATGTGAGAAAACAAATAATAAAAAGAAGAAATTAGACAATGTCCCCTT GTAGTTGTTTTGTAAAATGTACTTGCTTACCAAGTTGATTGGCACAGCAGGAAATCAACTGGTTGAGGCTAGAAATAGGA AATTTGGGGCTAACATCTACATTGAAGCAGAGTTGGGGCTTATGCTTGGTCCTTGCCTATTTCTAGCTGTCTGATAGCTC TAATTTTCTTGCTAATCTGATGGTTCTTAACTTCTTATCTACGATATGAACCATTATGTGTTTACTCTATGACCCATTAA TATGGAAGAAAAAATGGAGACAGTTGAATTCAGAATTTATCCTATAAATCTATTAATCTTCTACCCCCCCCCCCCCACCT CCCCCTGCTGTCACCATAACCTTGAATTGAAACTCTGCGTATGTACTTTATTTGAACATTATCAATGTTCTACTAGCATG TTGTTCTTTTTTCTTTTAAACTACTGATTGACTAACTAGAAATGTTCTGATGCATGCCTGGCTGGCTATGTTAGTCTGAA CCTTCTTGCGTATTCACTCTCTGAATTCATTTCTAAGTGTAGAAATTCCTCGCGATGCTCATACCTTTCGATGACAGGCT ATAATGAAGCTATCTGGCCAGTTAAGTGAGCAAATGAGAGAATCATCCCATATATGGGCTCCTCCAATATACAGGAGACT TCTCAGCACAGACAAGAGGGAAAAAGATTCCTCAGAGAGGTGCCTGTTGAAGATCAGATCTACTGTCATTCCTCCTTCAC TGGATCTCTCCAAGGTACAAAAGCCTTATTCAATAATAAGATATGACTCTGTACTCTTTGTGGCATAGCTATTTTATTAT TAGACGCTTGTGCAAATGATTCAAGCTACAATAGAGTCGAGGCAAGTTTGAAACGTAGCTTGCTAGCCCTGCTGCCTGCA TTTTGCTATAGTTGACAATTATCCAAATTAGTAGCTTTTTAGGGTGTTGCAAAGTGGAAAACAAAACAGATTTTATATCA TGTTCATTGCATGCCATAATTGATCTATAAGGTTCTTGCAATGGTTTAGACATGTGCTCTTTGGCCTCCTTGCCAACTTC CTTTATCTTTCAACAGGTCCTTGTCAAAGATATGAAGATAAAATTGCTTGATGGGATGAAGAATTTGCTAGATAAAGGTA TGAAGATTCAAGCTATTCGAGCATGGGGATGGTTTGTACGAATACTTGGGTCCCATGCTATGAAGAATAGACATTTAGTA AATGATTTGCTGAAAATTCCTGAGCGTACATTTACAGATCTTGACCCCCAAGTTCAGATTGCTACACAGGTACTGTATGA GTTACTGCATCAACTCATCTACAATTCACGCAGATGAGCTATGTGTGGGTTGCAAAGTTGTTCAATACTTTAACTGACAT GACACAGTGGCTTAAATAAATTTGATTGGCATTTGAAGCTTTGTGAATAGAGAACTCACTAGTTATTAATTCATTCACTG ATTGCTGCTTATGAGACTTTTTCGTGTGTTCTATGTACAGGTTGCGTGGGAAGGTCTTATTGATGCTCTTGTTCACCATC CAATATTAGGTTCAGAGAAAAATCCACCAGCTGAGGATAATTTTCTTGAGAAACAGCATTCAATTGGAAGGATCAACTGC GACAATCAAGCAAATGGGTTTTCCAAAAGCATAAAGCTAATAATGACTCCACTGATTGGCATCATGTCTAGTAAATGTGA TATATCAGTTCATTCATCCTGCTTGAACACATGGTGTTATTTGCTGCATAAGCTTGATACCTCCATCAACGAACCATCAA TGATGAAAATGGTTTTCGAGCCTATTCTTAAAGCAATATTTCAGAATAGACCTGATAGTAAGACTATCTGCTTATGGAAT ATGGGCCTTGATCTGTTCAGTGATAGTATTTCACTGAAGTGTAGGGATGCCACCTGCAATGATATTGGACTTTCTGTATC GGGCAAATGCTCTTGGAAGCAACACTCAATTAGATGGCTGCCATGGGATATCAGCCAGCTGGACTTTTATCTGAATATGA TTTATGTTCTATTCTGTCAAGCATCGGATACAACTGTCAATTGTGAGCATAGAAGTCATGTTTATGATGCTGCCTTAAAG TTATTTATTCAAATTCTGAAAGGGGTCAAACTGGACGTGGAAAGTCCATCTACCAATTATGATGGTATTATGGGGTGCAT GAACTCATTACTGACATTCATGAAAAGAGTATGTGATTTTCACCCAGATGGAAGTGAAAGTTATGAAGTGTACTGTACTT CCATTAAGTTTATAGACGCTATCACAAAGGAATTAGGTCCTTCTGTCCTGGGATCTCCTCTGTACAAGTTTTCTTTAGAC CTAAAGTACATTAATGACTTACAATCAGTTGATAATAACAACGACCAAAAATTTCCGAGTGTCAGATGTGTTTCTTATAT GGATAAGGTTTCTCCATTGGTTTATTTGATAGCTCTTCACTTTTATATGATGGTTCAGTTAACAACGAAGTCCCGCCAAT CAGACTGCATTTCACAAGGGATGTGTGAATATTTTAAATATATATTCTCTTCAAGTGATCCCCTGGAAAATCTCCTCACC TGTATTGGCCTCATGTACAAACTTGTTCAACCAATTTATTTAAATATATGGATAACAGTGGCTCAAGGTCTGAATAGCTG TGTAGATGATGCAAACTGCAAGTCCCTACAGGAAGCCTTGTCTGACAGCATTGGATATTCTTCCATATGCCATTTTTTGA TTTATCCCATCATGGCACATTCTGAAGTTTCAAGATTGACCTCGACAAATGCTAATGCCTCTTGGGAGCAGCATCCTGTA TTACCAGAAAGAAAGCTGAGGCTTGAACTTGCTATTCAAACTTGGAAATCGCTTTATGGATCTCTTAGTGCTTCAGGCTT TGGATGCTCAACTGCTACCAAGTTCTCTGGGGATCTGTGTACATTGTTGAGTAGGTGCCTTGATGAAAATACGGACTTGC TTGGCAATGACACTGATTTTAAGTTAACATGCAATGATATAGATCTCTGCGTCCTTCACTTATCTGGCAATTTCTTGCTA TACATTCTAGAACAGATTCAGACGTCAGAATTAGTTTCTGAAACAGACAGAAGTAGATCTTACTGTGATAGCAAAACACT CTGCAGTATAAGGAATTGCTTAAAATTTTCTTCCAAGTAAGTTCGGACATGTCTTTCAAGGATAAGATGTGCCTTTCTAC ATATTTATAAATTTAATTCCTGATCTACCTGTCTTTCTTGCTCTGAATGGGTGAATATCTGTTCCATATCCATATAATGA AATAAAGTTGTATGGAAGAAGTGGCTCTTCAATACAAACCTACTTTTTCAATAACCTGATAACAATGAAATTGCTTTCAT CATTCAGTTTGAAATGTAAAAAGCAATTTCATTGGCATCTCAATTCAATTTTCTTTTCTTTTTTGTACTTCATTTTATAT GCTGTTGCTGCCTATTCCCATTTTATGGGGTTAAGTTATTTGAATGTTGAGAACTTGAGATTATGATCACAACTTAGACT AATAGTTTGCTGCCTAGTATGTATTCTGCTTCATTGCTTCGTTGGTACGAATATCATTTTAATTTTAACCCGACATTTAT GATAAACTAACTGACTCTAGTAGCTGTCATGAGCATATTAGTTATTCACAAAACTAAAGGTCTCTTTATATTTAAATTGA TGCTGATGATTTTCATGTGGCATTTCTCAGGTATATGAATGTGGCATTTCGTGTGACAGACCCACTGCCTGGTTTTGTTG GGACCTCAAGGTCAGTCAATACAAGTTATCTTCTTCATGCATGTTTGGTTAGTCAATGAGTAACTCTATTTGACTCTCAC TTTGTAATAAATCACAGGCTATGTTCTGCATTGACATCCTTTATTAGTTGCCTTCACTGGAAGCAAGATATTCTTCTTTT TATGGAGGTTTGATTCCCTTATTTTTACTTCACAGATCATTAAAGTTGCCTCTACGATTCATTACAGTATTTATACTTCA CAGTTCATTAGTGGCTGATGGCTTCAAAGTTGCCTCTACGATTCATTGCAGAGAACCTCCATTACTTTTTTTTCCCGTTC AACTAGTTCATGATATTCCATATATTTGATTGCAGATTCTTTCCTGTCCACTACTTCAATGGCTATCAAATGCTATGCAG GATGAAAGAACAAGCGATCAACTCGGACTTCTGTGGACTGAAATTCTTAATTCCTTAAGAAGAAGTCAACCTCCAATAAA CTTCGGTTCATCTTTACTCAGACTTCATGAACCTCTGTTTGAGAAAACTCTTGATCACTCATGCCCCTCCATATCAGAGC CAACCATCAATTTTTGGAATTCTACATTTGCTCAACAAATTATTTTGGATTTCCCTCCAAGTCTTCTTCATGTTTTGGAC AAGCTATCCAGAAATGGAAAATTAAAACTCCAGAAGAGAAGTCTACCATCTCTCCAAAAATGTCATTCTCATGAAGAAGC CAATGATGCTCTGCAGGGATACAGGGTCACTGCAACACAGAACAGAACCTCTAAGAGGGTAGAATTATTGTTGGATTCAC ACAAAGAGGTGCCGCCATTAAGTTTTAAAAAGAAGAGGTTAGAACTGACTGAGCATCAAAAGGAAGTCCGACGAGCACAG CAAGGAAGGAAAAGGGATAACGGAGGGCATGGCCCTGGAATTAGAACTTACACCAATGCCGACTTTTCACAAGGGCTTGA TGATTCGCAAGAGAGCCAGGAGGACATAATAAGAGATTCTGAAGCCATATTGCAAATGTTGAGGAAAACCATCTAACTAG ATGTTAGTGCTGCACTGTATTTTGATTGCTAGTGCTCTGTACAAGTTATAATGAATGCCTAAATTATTATTGGGAGAATT CTAATTTAGCTTGTCTCGGTAAGCAATTTTTAATTACGAAAATATGAATTAACACCAGATTATAATTAATGCAGCTGGTG TTTGGTCAAGCATTCTTGAGTATTAATCTACTAAGGTCTAAGCCTCTAAGGGATTGTTTGAGTGTGAGTTTTTGGAGGAA AGGGATGGGAGACTTGTTGCATGAACTAAAAC
CDS sequence (LotjaGi4g1v0275300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGTCTCTGTCAACAACATTTGAAGCTACCCAGGCTATAATGAAGCTATCTGGCCAGTTAAGTGAGCAAATGAGAGA ATCATCCCATATATGGGCTCCTCCAATATACAGGAGACTTCTCAGCACAGACAAGAGGGAAAAAGATTCCTCAGAGAGGT GCCTGTTGAAGATCAGATCTACTGTCATTCCTCCTTCACTGGATCTCTCCAAGGTCCTTGTCAAAGATATGAAGATAAAA TTGCTTGATGGGATGAAGAATTTGCTAGATAAAGGTATGAAGATTCAAGCTATTCGAGCATGGGGATGGTTTGTACGAAT ACTTGGGTCCCATGCTATGAAGAATAGACATTTAGTAAATGATTTGCTGAAAATTCCTGAGCGTACATTTACAGATCTTG ACCCCCAAGTTCAGATTGCTACACAGGTTGCGTGGGAAGGTCTTATTGATGCTCTTGTTCACCATCCAATATTAGGTTCA GAGAAAAATCCACCAGCTGAGGATAATTTTCTTGAGAAACAGCATTCAATTGGAAGGATCAACTGCGACAATCAAGCAAA TGGGTTTTCCAAAAGCATAAAGCTAATAATGACTCCACTGATTGGCATCATGTCTAGTAAATGTGATATATCAGTTCATT CATCCTGCTTGAACACATGGTGTTATTTGCTGCATAAGCTTGATACCTCCATCAACGAACCATCAATGATGAAAATGGTT TTCGAGCCTATTCTTAAAGCAATATTTCAGAATAGACCTGATAGTAAGACTATCTGCTTATGGAATATGGGCCTTGATCT GTTCAGTGATAGTATTTCACTGAAGTGTAGGGATGCCACCTGCAATGATATTGGACTTTCTGTATCGGGCAAATGCTCTT GGAAGCAACACTCAATTAGATGGCTGCCATGGGATATCAGCCAGCTGGACTTTTATCTGAATATGATTTATGTTCTATTC TGTCAAGCATCGGATACAACTGTCAATTGTGAGCATAGAAGTCATGTTTATGATGCTGCCTTAAAGTTATTTATTCAAAT TCTGAAAGGGGTCAAACTGGACGTGGAAAGTCCATCTACCAATTATGATGGTATTATGGGGTGCATGAACTCATTACTGA CATTCATGAAAAGAGTATGTGATTTTCACCCAGATGGAAGTGAAAGTTATGAAGTGTACTGTACTTCCATTAAGTTTATA GACGCTATCACAAAGGAATTAGGTCCTTCTGTCCTGGGATCTCCTCTGTACAAGTTTTCTTTAGACCTAAAGTACATTAA TGACTTACAATCAGTTGATAATAACAACGACCAAAAATTTCCGAGTGTCAGATGTGTTTCTTATATGGATAAGGTTTCTC CATTGGTTTATTTGATAGCTCTTCACTTTTATATGATGGTTCAGTTAACAACGAAGTCCCGCCAATCAGACTGCATTTCA CAAGGGATGTGTGAATATTTTAAATATATATTCTCTTCAAGTGATCCCCTGGAAAATCTCCTCACCTGTATTGGCCTCAT GTACAAACTTGTTCAACCAATTTATTTAAATATATGGATAACAGTGGCTCAAGGTCTGAATAGCTGTGTAGATGATGCAA ACTGCAAGTCCCTACAGGAAGCCTTGTCTGACAGCATTGGATATTCTTCCATATGCCATTTTTTGATTTATCCCATCATG GCACATTCTGAAGTTTCAAGATTGACCTCGACAAATGCTAATGCCTCTTGGGAGCAGCATCCTGTATTACCAGAAAGAAA GCTGAGGCTTGAACTTGCTATTCAAACTTGGAAATCGCTTTATGGATCTCTTAGTGCTTCAGGCTTTGGATGCTCAACTG CTACCAAGTTCTCTGGGGATCTGTGTACATTGTTGAGTAGGTGCCTTGATGAAAATACGGACTTGCTTGGCAATGACACT GATTTTAAGTTAACATGCAATGATATAGATCTCTGCGTCCTTCACTTATCTGGCAATTTCTTGCTATACATTCTAGAACA GATTCAGACGTCAGAATTAGTTTCTGAAACAGACAGAAGTAGATCTTACTGTGATAGCAAAACACTCTGCAGTATAAGGA ATTGCTTAAAATTTTCTTCCAAGTATATGAATGTGGCATTTCGTGTGACAGACCCACTGCCTGGTTTTGTTGGGACCTCA AGGCTATGTTCTGCATTGACATCCTTTATTAGTTGCCTTCACTGGAAGCAAGATATTCTTCTTTTTATGGAGATTCTTTC CTGTCCACTACTTCAATGGCTATCAAATGCTATGCAGGATGAAAGAACAAGCGATCAACTCGGACTTCTGTGGACTGAAA TTCTTAATTCCTTAAGAAGAAGTCAACCTCCAATAAACTTCGGTTCATCTTTACTCAGACTTCATGAACCTCTGTTTGAG AAAACTCTTGATCACTCATGCCCCTCCATATCAGAGCCAACCATCAATTTTTGGAATTCTACATTTGCTCAACAAATTAT TTTGGATTTCCCTCCAAGTCTTCTTCATGTTTTGGACAAGCTATCCAGAAATGGAAAATTAAAACTCCAGAAGAGAAGTC TACCATCTCTCCAAAAATGTCATTCTCATGAAGAAGCCAATGATGCTCTGCAGGGATACAGGGTCACTGCAACACAGAAC AGAACCTCTAAGAGGGTAGAATTATTGTTGGATTCACACAAAGAGGTGCCGCCATTAAGTTTTAAAAAGAAGAGGTTAGA ACTGACTGAGCATCAAAAGGAAGTCCGACGAGCACAGCAAGGAAGGAAAAGGGATAACGGAGGGCATGGCCCTGGAATTA GAACTTACACCAATGCCGACTTTTCACAAGGGCTTGATGATTCGCAAGAGAGCCAGGAGGACATAATAAGAGATTCTGAA GCCATATTGCAAATGTTGAGGAAAACCATCTAA
Protein sequence (LotjaGi4g1v0275300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSLSTTFEATQAIMKLSGQLSEQMRESSHIWAPPIYRRLLSTDKREKDSSERCLLKIRSTVIPPSLDLSKVLVKDMKIK LLDGMKNLLDKGMKIQAIRAWGWFVRILGSHAMKNRHLVNDLLKIPERTFTDLDPQVQIATQVAWEGLIDALVHHPILGS EKNPPAEDNFLEKQHSIGRINCDNQANGFSKSIKLIMTPLIGIMSSKCDISVHSSCLNTWCYLLHKLDTSINEPSMMKMV FEPILKAIFQNRPDSKTICLWNMGLDLFSDSISLKCRDATCNDIGLSVSGKCSWKQHSIRWLPWDISQLDFYLNMIYVLF CQASDTTVNCEHRSHVYDAALKLFIQILKGVKLDVESPSTNYDGIMGCMNSLLTFMKRVCDFHPDGSESYEVYCTSIKFI DAITKELGPSVLGSPLYKFSLDLKYINDLQSVDNNNDQKFPSVRCVSYMDKVSPLVYLIALHFYMMVQLTTKSRQSDCIS QGMCEYFKYIFSSSDPLENLLTCIGLMYKLVQPIYLNIWITVAQGLNSCVDDANCKSLQEALSDSIGYSSICHFLIYPIM AHSEVSRLTSTNANASWEQHPVLPERKLRLELAIQTWKSLYGSLSASGFGCSTATKFSGDLCTLLSRCLDENTDLLGNDT DFKLTCNDIDLCVLHLSGNFLLYILEQIQTSELVSETDRSRSYCDSKTLCSIRNCLKFSSKYMNVAFRVTDPLPGFVGTS RLCSALTSFISCLHWKQDILLFMEILSCPLLQWLSNAMQDERTSDQLGLLWTEILNSLRRSQPPINFGSSLLRLHEPLFE KTLDHSCPSISEPTINFWNSTFAQQIILDFPPSLLHVLDKLSRNGKLKLQKRSLPSLQKCHSHEEANDALQGYRVTATQN RTSKRVELLLDSHKEVPPLSFKKKRLELTEHQKEVRRAQQGRKRDNGGHGPGIRTYTNADFSQGLDDSQESQEDIIRDSE AILQMLRKTI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 947 | 947 | 2.9E-193 | – | |
| Pfam | 3 | 228 | 226 | 6.1E-14 | ||
| SUPERFAMILY | 26 | 534 | 509 | 3.05E-6 | ||
| MobiDBLite | 911 | 953 | 43 | - | – | |
| MobiDBLite | 911 | 929 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0275300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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