Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0275700 |
| Transcript ID | LotjaGi4g1v0275700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BSD domain protein; TAIR: AT2G10950.1 BSD domain-containing protein; Swiss-Prot: sp|Q0HM63|E4PD_SHESM D-erythrose-4-phosphate dehydrogenase; TrEMBL-Plants: tr|K7M044|K7M044_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0275700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:64607154..64611594) extracted from Lotus japonicus Gifu genome v1.2.
TTTAAATTCTCGGATGAAGATGAAAATAGAAAATTAAGCTTAAGGTTCTGTGCTTTATCTCTTTCATACAAAGTTTCCAT GTTCTCTTCGCCGCCGGCGCCGTCGCCCTCCGCCGACGACCGCCACGGCGTTAAGGACGACGTATCGCTTATTTTCCGCG GCGTCGCTAACTTCCTCGCTCCGCCGCCCTCTTCTTCTTCTTCTTCCGCCGGCGACTCCTCTTCTTCGAAAACTCTCGTC GGAATCCGCAACGATCTCGTTGAGATCGGTGGAAGCTTCAGAAGCTCGTTCTCCCTTCTCTCGTCGAACAAAGCCGTCAC CGGAATATCCAAGTTCGCTTCTCAATTGTTGAAGTCGGTGCCTGATCAACAACGAGTTGATGGTGGCGCGGTGCCTGGGA CGACGGAAGATGTTGTTCGCTTCGTGAAGGAAATTTCCACGTGGCCGGAGTGTTGGACTGAATTCCCCTTGCCACTCCAT AATGGTACTTCTTCTTCTTCTTCTTCTTCAACTTTCCATTGATAAATAATATTATATATTTTTTATTATGATTAGTTCAT TACTATATTATTATTTGTTTGATTGTTTCTGATTATGATTCACTCTTTGTTCAGTTGAATGTATGTAATATGATTATGGT AGAGTTAGTATTTCTGATTATGTCTTTGAATTCAGTACATGACATGTCATTATGGTCTCATGTGATCCATAAAGTCAATT TCAGTTGAGAAAATCTTGGTTGCTAGTGTAGTTTGTTCATAAGTGAATTGTTAATTGCTATAGTTTATGGTTGTATGTAT TTCAATAGCAAATATGAACCCTTACTATATTGAATTGAGTATAGGAGAAAGGGATTGTAATTGTTACATATCTAATCTCA TGTACATGTTCTTCTTGGTCAAAGCTATATTTTAGAAATGTATACCAAACGTATTGTGCTTTTTGAATGGTGAATGCTAG TGGCATGCTTCAGTGATAGCTTAGTTTGTATATCAAATCCTATTGTTGAATAATGTCAGACAATAAGGGTAGGCTTGGTG AGATAAAGCAATGTCAACAAAAAGGGCTTGGGTTCAGTTCGTTTTGGGTCTTGGGTGCAGCCCTTTGCGGTCCAGTTTTT GTTAACATGGTCGAAGAAAGGAAGGTCCTTTTCTTGGGTTGGTTAGTTAACCAGGGCTGTTAAACTTCTATGCTTGGTAT GGTAATTATAGTATCCATGAGATAACGCATGCTTACTCAAAGGCTATCTATGAATAAATTAGATGTTGATTCAAGTAAGT TCTATGGAGGTAACTTTAGTGTTTCCTTTTCTTTTTGAAATTCCATTCATTATACTTGACTATAGATCTATTTGGTATAG GGTCCAAGAGAAGCCTCATGTTTGTAAGGTTTATTCTAGGAAGAAGAAGTCCTTGGGGCGCGGAGATGAGGAGAATGAAG CGCTGGCTGCGATGACAGGTGCGCTTGAGGCGCATGGAACCCAGGTTGGGCCAAATCCTAACCTTGTGAGAGTGCTCTTA TTTATATTAGTCTAACCCTACCAGCCAAATAACACTGACTCTAAAGAGGCCCAACTCAAATGATAAAAATAGACTCAGCC AAGCATGCTTAAACTAACAGAGATAGATAAAACCAAACCCAAGCCCAAACTCAGATAGGCCCAGTCGCCCCAGGCACACT GGTCATTGCAGCCAGCGCTGCATTCTCCTCATTTCTGCCTGCCAAGGACCTCTTCTTCCTAGAACAAACCTCGTGAATAG GAGGCTTCTCTTGGATCCTAACAATTTTTTTTTAGTTGATAAGCTCAAGCGGATAATATGCAAGGCTCTAACAATTTTTG GCGAGAATGGAAGCTTCATCTCACTTATTATCACAGATATCTTGGAAAGTTCTAGTTTTTTCTTGTCTAGTATTTTCTAT TTTGTGTGGTACAGTCCTGTTTACCTCAATGCTGTTGCTGTCATTTATCAGAATGCAATTTAATTTAGCAATTATTTGAC ATCTGAGTTCCACGCCTTTTTGACTTTCAAGTTCCAAAACTATATTCTTGGGAATTAACCTTTAGAATTCTGTTGGGAGA AATTTCCATTAACAACTGCTGCAATGCTCCTTTAGCAACGCTGATTTAAAATAACTTATTCATGTTGTGAAGCTAGTTCA CTCTCCCGATCAATATAAAGTCCGAGTGCTCGTGTTCTTCTCAGCATACTTCTGGTTTAACTCTGATGTAAATGTTATTT GAATTAAAGTGGTTTTGAAATTTGATTCTACATACAGACTTTGTACAATAAACCATAAAAAGCTCTCAATTTTTCATTAT TTTGATCCTGCTTGACTGTATAACGAGATTGGCAGTCATTAATACTGAAATTTGAATTATTTCAGCAGATTTCAGCCTGT CCTATTCTCAGAGAGAACATGTCTTAGCTATAGAACGGCTGGTGCCTGAATTGGTGACACTTAGACTGAACCTTTGCAGT TACATGAATGTGGAGAAATTTTGGATGATCTATTTCTTGTTAGTACTTCCAAGACTTAATCAGCATGACTTTGAGCTCCT ATCTTCTCCAAAGGTAACCAATGCTTATTGCTTACTTTTCTTCAGTGTCAACATGTTTGGGTGACAATATTCTCTCAGTA TCTGCTATATCATGTGTATGCTTTTCCTTTTTTCTTTTGTTAGATTGTTGAATCAAGATGTACTCTTCTCCTAAAACTCA GAGAGAGGAAAGATTTGCAGGATGGAGAATGTGAAAAAGCAAGTACTGTGGATAAATTTCAAGAAGGGAGGGAGGACAGT GGAAGAGAGAGTATCTCATTTGAGCAAAATCAGGTTTTGGTTGAGGTTACAAATGCAATAAAGAGTTTAGAAATAGATGA CATGACCAATAGTGAAAGATGGTTGGAAGTTACAGATATTGATGCTACTTCATTGACTTCCTTTACGAAACTTCAACTAG AAGAGGATGTCTCATTCAGTGACCTAGATGATGATGGAAGTCGTAGCTCTGATAAACTATCAGGCCATAGGGAGGCACAG GACATCAGGGGTTCATCATCTGAAGGTTCTAGTGACTGGGTTCAGCTGCATAAAAGTACTGAGAGAGGTAGCTCAAAGAA GGCTATCTCTTTAAAAGGTAAGGATTCTGAAGATGAGTCAAATGATTGGCTTAAAGTTGATGATTGGCTTACATTTGATG AGCTTAGTTAGATAGGTTTTTCTCTATTTATAAAGAAGATATCTTGCTAAATCTCATTGAAATTCCCTGTACAAATACAT TACTTTATAGAAATAATTCATTCATATATGCAAAAGATTTGAAGTTAAAATATGATCTTTTGTCGCCTTCTCCATCGAGC TCAGCCACGAACCATTGCAGCATCTTGCATTGCCGTGAGGCCCTGCCGTTTCCCTTCATCTCCGATCCCTGGTTGTTTCT CTCCCTCTCTGTTTTTGCGTTGATTGAAGCGGTGCCTCTCCTTTGTTAAACGGGTCTCTTGATTGTGATTACTGATTAGG TTTTCTTTTGATGAATGATTACTGATTGGGTTTAAAAGTTGTGTTATCATGTGTGTGCATAGGGCCTGACCCTTTCTTTA GTACCAAAAATGAGAAGAACTGATGGAAAAAGCTGGCTTCACAACCCAACGCTAGTTTTTTTAAAGGATGCTCTGTCCTC TCTTTTTTCAGTGTTTCTTTAGCAAAAAAAAAACTTGTTGTATTCCAAAAATATATCCTCTCATTAAAATCCCCAAAAAA AACATTTTAATTTCAATGCAAAAATTCCTCAAAAAAGAGAGCTTAAAGAACATATAAAAATATAGGAGGGTAGAAGAAGG GTTGAGTTTGGAAGGTCTGGATTGGTGGTTGAAGGTTGGTCTGGGTGGTTCCGAGGAGGCTGTGTGGCAGTGCATTTCAA TGATATCAAGTTTGCGAAGGTTGGCGCTGAAGCGAAGAGCCTGACGTTGACTATTTGGGTGAGGGGCTGGTTTGGGTTGG GTTTGTTTTATTGGCGATTGTTTTTCTGGGTTTCTAGGTGTGGAGGTTTCGAATTCCGATTGATTTTCTGGCTTTGCTGG TTGAAGGGGGAGTGAGGGGGTAGAAGGGTGTAGGTCATGTAACAAAGTATTCTTTCAGTTGGGTAGTCATCCACCACAAT GCAAAGTAATTTTCTAAAACATGTGGAAGCCTAGGATGGTTACATTTGACAAATGATTGCATTCATTCCAATACATTATA TTCATTCCTTTATGGTTGACCCAATACACTGTACTCTTAAGAACAAAATGACCTGGTCAAAGAGTAGTGCAAAAATAATT CACACTTAGCCTTGTGAGCTTATCTCCAGCAAGAAGCCAACAAGGGACCATGGCAGATAAAAGCGAGCATAATGTAAATT ACGATCACAAAAATTAAGATAAGTGCAACCCTGCAGGAAAA
CDS sequence (LotjaGi4g1v0275700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCTCTTCGCCGCCGGCGCCGTCGCCCTCCGCCGACGACCGCCACGGCGTTAAGGACGACGTATCGCTTATTTTCCG CGGCGTCGCTAACTTCCTCGCTCCGCCGCCCTCTTCTTCTTCTTCTTCCGCCGGCGACTCCTCTTCTTCGAAAACTCTCG TCGGAATCCGCAACGATCTCGTTGAGATCGGTGGAAGCTTCAGAAGCTCGTTCTCCCTTCTCTCGTCGAACAAAGCCGTC ACCGGAATATCCAAGTTCGCTTCTCAATTGTTGAAGTCGGTGCCTGATCAACAACGAGTTGATGGTGGCGCGGTGCCTGG GACGACGGAAGATGTTGTTCGCTTCGTGAAGGAAATTTCCACGTGGCCGGAGTGTTGGACTGAATTCCCCTTGCCACTCC ATAATGATTTCAGCCTGTCCTATTCTCAGAGAGAACATGTCTTAGCTATAGAACGGCTGGTGCCTGAATTGGTGACACTT AGACTGAACCTTTGCAGTTACATGAATGTGGAGAAATTTTGGATGATCTATTTCTTGTTAGTACTTCCAAGACTTAATCA GCATGACTTTGAGCTCCTATCTTCTCCAAAGATTGTTGAATCAAGATGTACTCTTCTCCTAAAACTCAGAGAGAGGAAAG ATTTGCAGGATGGAGAATGTGAAAAAGCAAGTACTGTGGATAAATTTCAAGAAGGGAGGGAGGACAGTGGAAGAGAGAGT ATCTCATTTGAGCAAAATCAGGTTTTGGTTGAGGTTACAAATGCAATAAAGAGTTTAGAAATAGATGACATGACCAATAG TGAAAGATGGTTGGAAGTTACAGATATTGATGCTACTTCATTGACTTCCTTTACGAAACTTCAACTAGAAGAGGATGTCT CATTCAGTGACCTAGATGATGATGGAAGTCGTAGCTCTGATAAACTATCAGGCCATAGGGAGGCACAGGACATCAGGGGT TCATCATCTGAAGGTTCTAGTGACTGGGTTCAGCTGCATAAAAGTACTGAGAGAGGTAGCTCAAAGAAGGCTATCTCTTT AAAAGGTAAGGATTCTGAAGATGAGTCAAATGATTGGCTTAAAGTTGATGATTGGCTTACATTTGATGAGCTTAGTTAG
Protein sequence (LotjaGi4g1v0275700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFSSPPAPSPSADDRHGVKDDVSLIFRGVANFLAPPPSSSSSSAGDSSSSKTLVGIRNDLVEIGGSFRSSFSLLSSNKAV TGISKFASQLLKSVPDQQRVDGGAVPGTTEDVVRFVKEISTWPECWTEFPLPLHNDFSLSYSQREHVLAIERLVPELVTL RLNLCSYMNVEKFWMIYFLLVLPRLNQHDFELLSSPKIVESRCTLLLKLRERKDLQDGECEKASTVDKFQEGREDSGRES ISFEQNQVLVEVTNAIKSLEIDDMTNSERWLEVTDIDATSLTSFTKLQLEEDVSFSDLDDDGSRSSDKLSGHREAQDIRG SSSEGSSDWVQLHKSTERGSSKKAISLKGKDSEDESNDWLKVDDWLTFDELS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 363 | 355 | 9.7E-125 | – | |
| PANTHER | 9 | 363 | 355 | 9.7E-125 | – | |
| SUPERFAMILY | 108 | 189 | 82 | 1.23E-12 | – | |
| SMART | 134 | 185 | 52 | 9.5E-6 | ||
| Pfam | 135 | 186 | 52 | 5.0E-6 | ||
| MobiDBLite | 296 | 356 | 61 | - | – | |
| MobiDBLite | 298 | 319 | 22 | - | – | |
| MobiDBLite | 320 | 334 | 15 | - | – | |
| MobiDBLite | 335 | 356 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0275700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…