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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0277200 |
| Transcript ID | LotjaGi4g1v0277200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heptahelical protein; TAIR: AT5G20270.1 heptahelical transmembrane protein1; Swiss-Prot: sp|Q93ZH9|HHP1_ARATH Heptahelical transmembrane protein 1; TrEMBL-Plants: tr|G7JFE9|G7JFE9_MEDTR Hemolysin-III-like protein; Found in the gene: LotjaGi4g1v0277200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:64717015..64720160) extracted from Lotus japonicus Gifu genome v1.2.
TTGGACCTTGTAATAAAAGCAGCATATATATAATATATTGTTATAAGTTATAACAAACCCCACAGAGTAGTGCCAATTTT CACGGAGAGAGGTCCTTAAATGCTGCAGTTGGTGCAGTTGTGCAGCATCCTTCCATAACTACATCTCCAATCTCTCAACA ACAACTAGCCACGCATCGCATCAAACAACACAAAAGAGAGAGAAACTTACAAACAAACAAACACACAAAACTTGCCTCTC TCTGCACAAGTTAACTAACTAACTCGTGGTGGTGGTGGTAGTGGTGGCGATGAACTATTGTGAGACGAAAAGCGTGGCGG TGGTGAAGAAGCGGAAAGGCGGCAGAGAAGAAACACTCTCACCTTCTTCCAACAAAACCACCACCGCCATGTTGTCGTCT CACCAGGATCGGAATCGGAACAACAGATCACCACCGAAACGCTACCCTCTCTTGTCGTTTTGGGAGCTTCCGGAATACAT GAAGGACAACGAGTACATCTTGCGTTATTACAGAGCCAATTGGCCTCTTAAACAAGCTTTCTTCAGCCTCTTTCGTTGGC ATAACGAAACCTTAAACGTTTGGACGTGAGTTCTTTAATTTCATTTTGTTCTTTTTTCTTCTGATTCATTCTCATATGAT ATGTTTCTAATGAGGATTTTGCATGAACGTGATTGATTGATTTTCAGGCATTTGATTGGATTTTTTCTGTTTCTCGGATT GACTCTGGCGAATTTGATGAAGCCTCATGTGGTGGATCTGTTAGACCAAATTACCAGGTTTTTTTTCATTTTTTTTTTCA ATTTACCACTGCATACTCACTGTCACTCTGTGAGAAGTGAGAACCAATCGCGTTCTTTCTTCATGTTACAGTAAACATGT GTCAGTTGTTGCTAGCAGATCGTGCCGAAACTTTGAATAAACAAACACTTACTACTCAACTACTTGCCTGAAACGTGTAA TTATTAATTAGTAGTAGGAACTATAAGAACATAGGAATTTTTTTTGGAAAACAGCTCATATCAGGCTAGCTATTAGTTAT TGTTTCAAAATTTTCAACCCAAAGTAGGTGTAAGATGGGAATGATTTCTTACTTTATTTATAGCATGTTTTAGATATTAT AGTATAAAATAAATAATTGACAACTAGAAACTCAGTGATTGGTTTAAATTGAAGCTTAGCAAACCATTCATTTGACATAT CAAAATTTGGATTTGGTTGAGATCTTCACTTTAGTGAGGAAAGTAAAGAATCTATAAGTTATTGGTATAATATACATAGT ACATAATAAAATATAAATGTGTTTGATGAAATTCCTTTTTTTTTTATTGGTGTAAACCCAGAATTCGAACTTGTGTATTC ACCTCACGAGATCTAATTTGTCTAATGAATATCTTGTTGATTGCCCTGTTTTGAAATTGATAACATGTTATTATAATAAG TTTCGTAATTATATATCACATATATTTCCTAATTTTAGTGGAGATTTAGATTCTCTTATCCTACATTAGTGTGAAAATGT AACGTGAATTCTCTTGATTATCTTATCAATGGTTGAGATCATTTCTTTCTAAGCAGCTAAATTTCCAACGTTTCTATGCA GTTTGTGGAAAAAACAGGGGTACTCACAAAATTGTTTTCTCCAATCCCTTCTATATGTGAATTAATATCAGATTACACCT TTTCTGTCTTTGCATATTAGCCAATTTGGAAGAGGATTTATGTTAGGTGAACTGCCTAACTAACAGCACAGTAGCTTACC AGAACTCTCAACTAAATTTGAATATCATCTCTGCAGGTCTTTTTCTTCAAGTGCAGACAAAAATGTTTCTGATAACATCA AAGATCTGTTCCTGGTAAGTAATTTCTTAATTTAAAATTTCAAACATGATCACACCCTGCCTCCACATCTTTGACTAGTA AAGTATGTTAGTATTCACCTCGAAATAAAAAACGAACGAAACTCTTTTTCGAGATAAAAGTACTTTCTGATGCTCTCAAG TCTCAACTAGTATCCAAAAATACATAGACATATATAGACAACAATATGTAATGACTATTTTTGAAGTCTAACATTGTATG GAACATGCAGGGGACAGCATTACTCTTCGATTTAAAACATCAGCTACCTCTGAAAATGGAACTCAAATCCATAGAGATGA TCACAGAAAGGTGGCCCTTCTTCATTTTCCTAGCTGGAGCCATGTTCTGCCTCATCTCTAGCAGCATTTGCCACCTCTTC TCTTGTCACTCCCACGACTTAAACCTGTTACTATTGCGAATCGACTATATCGGGATTGTTGTCATGATCATCACCTCCTT TTTCCCTCAGATTTACTACATTTTCCTGTGCCAACCTCACTGGCAGCTCCTCTACCTTGCTGGGATCACAGCAATGGGGC TATTCACCATAGCAACACTGCTCTCCCCATCGCTTTCGACCGGCAAACACCGCGCATTCAGGGCCATGTTGTTCTGTTCA ATGGGACTTTTTGGCATTGTTCCTGCAATTCATGCTTGTTTTGTCAATTGGGGGAACCCGCGGCGCAATGTGACACTTGC ATATGAATGTACCATGGCCTTGTCTTACTTGACAGGGACCTTGTTCTATGTGACAAGAATTCCAGAAAGGTGGAAGCCTG GGTGGTTTGATTTGGCAGGACATAGCCATCAGATATTTCATATTCTGGTGGTGGTTGGGGCATTGGCACATTATGCAGCT ACTCTGAAAATGCTTGAATGGCGTGACGCTTGGGGGTGTGACAAGGTTGGTCTTCAATGATGTATCTTTCACTACAGCAT AGAAGATAAGGAGCATTGTCCTTACATAAGTGATTCAGCAAAATGTTAATACTTAATGTCTGTATGCATTATCTCAGTTA GTCAGTTCTGTCTCATGAGTCATTTTTCCCCGTTATCAATTTGTCATTCAATGGATCAATATATTATTGTACCTAGAATT TATTTAACGGGATTTGCTCTTCTGTCCCTAGTTTGTTAGATTTCTATATGGTTGTGCTTAGATGAATATTGTATTGTTCT TTAAACTACGACTTTAACAAATGTCAATGACAAGTATTGAAAAGTTCGGAAGAAGAATGATATCAAAAGAACAAAGGTCA TTCTCAATTCACAAGGAGACACATGC
CDS sequence (LotjaGi4g1v0277200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACTATTGTGAGACGAAAAGCGTGGCGGTGGTGAAGAAGCGGAAAGGCGGCAGAGAAGAAACACTCTCACCTTCTTC CAACAAAACCACCACCGCCATGTTGTCGTCTCACCAGGATCGGAATCGGAACAACAGATCACCACCGAAACGCTACCCTC TCTTGTCGTTTTGGGAGCTTCCGGAATACATGAAGGACAACGAGTACATCTTGCGTTATTACAGAGCCAATTGGCCTCTT AAACAAGCTTTCTTCAGCCTCTTTCGTTGGCATAACGAAACCTTAAACGTTTGGACGCATTTGATTGGATTTTTTCTGTT TCTCGGATTGACTCTGGCGAATTTGATGAAGCCTCATGTGGTGGATCTGTTAGACCAAATTACCAGGTCTTTTTCTTCAA GTGCAGACAAAAATGTTTCTGATAACATCAAAGATCTGTTCCTGGGGACAGCATTACTCTTCGATTTAAAACATCAGCTA CCTCTGAAAATGGAACTCAAATCCATAGAGATGATCACAGAAAGGTGGCCCTTCTTCATTTTCCTAGCTGGAGCCATGTT CTGCCTCATCTCTAGCAGCATTTGCCACCTCTTCTCTTGTCACTCCCACGACTTAAACCTGTTACTATTGCGAATCGACT ATATCGGGATTGTTGTCATGATCATCACCTCCTTTTTCCCTCAGATTTACTACATTTTCCTGTGCCAACCTCACTGGCAG CTCCTCTACCTTGCTGGGATCACAGCAATGGGGCTATTCACCATAGCAACACTGCTCTCCCCATCGCTTTCGACCGGCAA ACACCGCGCATTCAGGGCCATGTTGTTCTGTTCAATGGGACTTTTTGGCATTGTTCCTGCAATTCATGCTTGTTTTGTCA ATTGGGGGAACCCGCGGCGCAATGTGACACTTGCATATGAATGTACCATGGCCTTGTCTTACTTGACAGGGACCTTGTTC TATGTGACAAGAATTCCAGAAAGGTGGAAGCCTGGGTGGTTTGATTTGGCAGGACATAGCCATCAGATATTTCATATTCT GGTGGTGGTTGGGGCATTGGCACATTATGCAGCTACTCTGAAAATGCTTGAATGGCGTGACGCTTGGGGGTGTGACAAGG TTGGTCTTCAATGA
Protein sequence (LotjaGi4g1v0277200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNYCETKSVAVVKKRKGGREETLSPSSNKTTTAMLSSHQDRNRNNRSPPKRYPLLSFWELPEYMKDNEYILRYYRANWPL KQAFFSLFRWHNETLNVWTHLIGFFLFLGLTLANLMKPHVVDLLDQITRSFSSSADKNVSDNIKDLFLGTALLFDLKHQL PLKMELKSIEMITERWPFFIFLAGAMFCLISSSICHLFSCHSHDLNLLLLRIDYIGIVVMIITSFFPQIYYIFLCQPHWQ LLYLAGITAMGLFTIATLLSPSLSTGKHRAFRAMLFCSMGLFGIVPAIHACFVNWGNPRRNVTLAYECTMALSYLTGTLF YVTRIPERWKPGWFDLAGHSHQIFHILVVVGALAHYAATLKMLEWRDAWGCDKVGLQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 96 | 96 | - | – | |
| MobiDBLite | 15 | 48 | 34 | - | – | |
| MobiDBLite | 23 | 42 | 20 | - | – | |
| PANTHER | 37 | 371 | 335 | 5.5E-169 | ||
| PANTHER | 37 | 371 | 335 | 5.5E-169 | – | |
| Pfam | 88 | 356 | 269 | 3.1E-69 | ||
| TMHMM | 94 | 116 | 23 | - | – | |
| Phobius | 97 | 116 | 20 | - | – | |
| Phobius | 117 | 175 | 59 | - | – | |
| Phobius | 176 | 199 | 24 | - | – | |
| TMHMM | 178 | 200 | 23 | - | – | |
| Phobius | 200 | 213 | 14 | - | – | |
| Phobius | 214 | 234 | 21 | - | – | |
| TMHMM | 215 | 234 | 20 | - | – | |
| Phobius | 235 | 240 | 6 | - | – | |
| Phobius | 241 | 259 | 19 | - | – | |
| TMHMM | 241 | 260 | 20 | - | – | |
| Phobius | 260 | 270 | 11 | - | – | |
| TMHMM | 270 | 292 | 23 | - | – | |
| Phobius | 271 | 292 | 22 | - | – | |
| Phobius | 293 | 303 | 11 | - | – | |
| TMHMM | 304 | 326 | 23 | - | – | |
| Phobius | 304 | 323 | 20 | - | – | |
| Phobius | 324 | 342 | 19 | - | – | |
| TMHMM | 341 | 360 | 20 | - | – | |
| Phobius | 343 | 363 | 21 | - | – | |
| Phobius | 364 | 377 | 14 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi4g1v0277200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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