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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0278800 |
| Transcript ID | LotjaGi4g1v0278800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mitochondrial group I intron splicing factor CCM1; TAIR: AT5G50900.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q55445|Y041_SYNY3 Putative methyl-accepting chemotaxis protein sll0041; TrEMBL-Plants: tr|N0DKR4|N0DKR4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0278800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:64913721..64916310) extracted from Lotus japonicus Gifu genome v1.2.
ATCGGAAAAAAAAAATTCAGGAACTTATTTTCGTACGGCAGACAATTTCAGGGACCTACAGAGTATTTAAGCCTAAAATT AATGGCTATGATTTGGAGTCACTTTTCTAAGTTACTCCTGGAGTCAATATATCACTCCTCTATAAACATTATTTATTTTG CTAGTTCATTGTTCTTCTATAGACTTTGAGTTTTTTTCTCAACACTCTCATTCTAATTTGAATGTCAAATTGCATTTGGA TGTACCTCCTCTACCATGTTTACATCGCACCACTGTACCAAAAGATTCATGAGAATGATGCACAGCACAACCACCACATA ACATCAAGAGCATGTACAATGGCTTAGATTCGGGAACAACAATTAGCATATACTACTCTATCTACAACTCCCACCTAAGA CAACTCTTTTGATGCTATTTAAAAGAGGATTAAGTATCACAAAATCCAATTCCAAATGATATCCTCATAAAACTCCAAAG TACTTTAGTTTATCTTATTGTACCTTAAAAAAACACCATTCAACACTCAAACCCAAACACACTCATGAGTTGCGTATATA AGGCATAACCAGAAGAAGAAGATTGAGAAACTGTGTTCGAACTGAATCGCCATGGAAGAACCATCAAGAGAAGAAGCTGA CACCACCACCATCAACAACAACACCCAGATGATCCCTCAAGTTCTGCAAGTCCTCCAAGCTCTCAAACAAGCTTCACACG ACATCCAACACTCTTCTTCTTCTTCCTCCGACGACCATTCACCTGCCATCAACGCTCTCCTCCAACTCCACACCACTCTC TCCACCGACTCCCCACTCTCCCACCACCTCCACCGCCTCAAGACCCTCCTCGACTCCCTCCACAACGCCAAAGGCATCCG CTCCTTCCTCACGCGCCCCCTCTCCGCCCACTCCATCTCCCGCGTCGCCGCCTCCATCGAAGCCGAGCTTCAAGCCTGGA TCGACCGTGAAACCACTCAAACGCTCTCCCGCTCCCTCACCAACAACCACGACCTCCTCCTCCTCCTCCCGCTCCTCACC CAGCTCATCGACCGAGTCAACCAAGGCTTCGACCGCGAGTTTCAGAACCTCGTCCTCACCATGAAACTCTTCTCCTCCCT CGAGTCGCTCCTCTTCGATGAAAAGTGCCAGCAACCGGTCCGTGAGCACGCCGGAATGGCCATCGCCGCGTTGATCCGGT TCAACAAGGACGTGTTCGTCGGTCAGGTGCTGATGGGTCCGACCGTTCGAGCCTTGGTTTCCATGGCCTCCGTGGATTCC CTCGACGTGCTGTGTTCCCTTGTGAAGTCCATCAGGTCCCCTTTCGTCGACGAGATTGAGTCCAACGGCGAGATACCGAA GATCATCGCGCTTCTGGGTTCCGACGATCTGCAGTTGACGGTGCTGGCGGTGGAGGTGGTGCTTGAGATTGGGTATTTTG GCCGGAAGGAGGCGATTGAGGCTATGATGAAGGAGGGTGTGGTGGAGAAGCTTGTTGAGCTTCAGAGATTGGAGGTGGAG GGTGGTGGTGGAGGGATGAGGCACCCTTTTGCGAGCTGTGTGGCGATGTTTGCTGTGCAGTTGGATGTAGGGGAAGGGTT GAGGCAGAGGGAGAAAAGGGCTTTGAAGCCTGAGATTTTGGAGAGAGTTAGAAAGGCTTCTCTTTCTGATGCTGAATCTG CTACCATTGTTGCTGAGGTTTTGTGGGGTAGTTCACCCTAAACTTTTTCTTTACTTTACTTTATTTTTTTTTTGGTTGTT TGTACAGATTGCATGTTAGGAACAGGGAATTCAATTTTGTTCATTTTAGATTGTAGAGTAGTGTAATCAATACTTCTTCT TCCTCCACTTTCATTTGTTTGTATAATACCATCATGATAATGTTGTAATCTGAGTGTCAATGTGATGAAGGTATTGGTGA ACATGTTTGTCTCATGTGATTGATGTTGAAGGCCATTATTGAATGAGATTTTAACATGGGGTTTATAAGTTTTGAGCTTT TTGCTTTACAACTACAATAACTAGTTTTTGTGGTATAGTTTTGTTAAGGTTTTATCCATTGGTATCAAAGTCTTCTACAT TGTTTTACTTGCAAACTAGCGGCGCAGGTGGTAACCCTGATATTGCCGTGTTTGTTTGGAACTAATCAAAGGGCTAGTGC ACAATCAGCTCGTGTGAGCAGCGAAACTATGTGTTGTGTGAGATGTTAAGATCCAATTATAACTATGAGATTTCTAGATG TGCAATTGCAAGAATGTTGAATGAATGCTAAAGTGTGAATCGAGATTGTTTGTTGCTTGGAATAATTTGGATACAGAATA TGCTGGGGACAAGTCAGGATTTAGAAGGGTATATGCCATTTGTGTGGTGGAGAGTGGGGTTGGAAAACGGAACAAATGTT CAAAGCCTACACACACGCATCTGCACACGTCTACTTAATATTCAATCCACGAGTTTAGCGAGGTGAAGGAGTAGTTGACT GGTTGATACAGCATAGCTTTTGCCTTTTCATATTATATTTAATTCAACAGACATTTTTCTTTTCTACTACATGTTAACAT GATTTGTTTAAATACTACTACTAATTAAAG
CDS sequence (LotjaGi4g1v0278800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGAACCATCAAGAGAAGAAGCTGACACCACCACCATCAACAACAACACCCAGATGATCCCTCAAGTTCTGCAAGT CCTCCAAGCTCTCAAACAAGCTTCACACGACATCCAACACTCTTCTTCTTCTTCCTCCGACGACCATTCACCTGCCATCA ACGCTCTCCTCCAACTCCACACCACTCTCTCCACCGACTCCCCACTCTCCCACCACCTCCACCGCCTCAAGACCCTCCTC GACTCCCTCCACAACGCCAAAGGCATCCGCTCCTTCCTCACGCGCCCCCTCTCCGCCCACTCCATCTCCCGCGTCGCCGC CTCCATCGAAGCCGAGCTTCAAGCCTGGATCGACCGTGAAACCACTCAAACGCTCTCCCGCTCCCTCACCAACAACCACG ACCTCCTCCTCCTCCTCCCGCTCCTCACCCAGCTCATCGACCGAGTCAACCAAGGCTTCGACCGCGAGTTTCAGAACCTC GTCCTCACCATGAAACTCTTCTCCTCCCTCGAGTCGCTCCTCTTCGATGAAAAGTGCCAGCAACCGGTCCGTGAGCACGC CGGAATGGCCATCGCCGCGTTGATCCGGTTCAACAAGGACGTGTTCGTCGGTCAGGTGCTGATGGGTCCGACCGTTCGAG CCTTGGTTTCCATGGCCTCCGTGGATTCCCTCGACGTGCTGTGTTCCCTTGTGAAGTCCATCAGGTCCCCTTTCGTCGAC GAGATTGAGTCCAACGGCGAGATACCGAAGATCATCGCGCTTCTGGGTTCCGACGATCTGCAGTTGACGGTGCTGGCGGT GGAGGTGGTGCTTGAGATTGGGTATTTTGGCCGGAAGGAGGCGATTGAGGCTATGATGAAGGAGGGTGTGGTGGAGAAGC TTGTTGAGCTTCAGAGATTGGAGGTGGAGGGTGGTGGTGGAGGGATGAGGCACCCTTTTGCGAGCTGTGTGGCGATGTTT GCTGTGCAGTTGGATGTAGGGGAAGGGTTGAGGCAGAGGGAGAAAAGGGCTTTGAAGCCTGAGATTTTGGAGAGAGTTAG AAAGGCTTCTCTTTCTGATGCTGAATCTGCTACCATTGTTGCTGAGGTTTTGTGGGGTAGTTCACCCTAA
Protein sequence (LotjaGi4g1v0278800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEPSREEADTTTINNNTQMIPQVLQVLQALKQASHDIQHSSSSSSDDHSPAINALLQLHTTLSTDSPLSHHLHRLKTLL DSLHNAKGIRSFLTRPLSAHSISRVAASIEAELQAWIDRETTQTLSRSLTNNHDLLLLLPLLTQLIDRVNQGFDREFQNL VLTMKLFSSLESLLFDEKCQQPVREHAGMAIAALIRFNKDVFVGQVLMGPTVRALVSMASVDSLDVLCSLVKSIRSPFVD EIESNGEIPKIIALLGSDDLQLTVLAVEVVLEIGYFGRKEAIEAMMKEGVVEKLVELQRLEVEGGGGGMRHPFASCVAMF AVQLDVGEGLRQREKRALKPEILERVRKASLSDAESATIVAEVLWGSSP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 18 | 369 | 352 | 8.1E-150 | – | |
| PANTHER | 18 | 369 | 352 | 8.1E-150 | – | |
| SUPERFAMILY | 22 | 298 | 277 | 5.76E-11 | ||
| Gene3D | 45 | 303 | 259 | 3.5E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0278800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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