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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0280900 |
| Transcript ID | LotjaGi4g1v0280900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SAM domain (Sterile alpha motif) protein, putative; TAIR: AT2G12462.1 sterile alpha motif (SAM) domain protein; Swiss-Prot: sp|Q8N9M1|CS047_HUMAN Uncharacterized protein C19orf47; TrEMBL-Plants: tr|A0A0S3R6H4|A0A0S3R6H4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0280900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:65190012..65192737) extracted from Lotus japonicus Gifu genome v1.2.
TGTCTCATAAGTCCACTTGAGGTACTTGACGAGAAACAGAGATGGAAGAAGCTTGGAGAAAAGCTTTGGGATATGGAAGA AATACCTCTGATCAACCCTTAGTTCCTTTTTGCAGTTTTCTTCTTCTTCGATCTGATCTTCGACCTCTAAATTTTTATAT TTGACTTCAATCTCTAATTTCCGATATCTGATTTTCGATCTACGACTTAGATCTCTGTTTTTCGATCTCCGACTTCGATT TATATTCTCCAATTTCCGATTTTCGACTTTCTACATCAACGTGTCTTCTTGCTTGTTGATTTCCATGGATGGATCTTCAA CACCACTGCATTTCCCTCTCTTTCTCTTTCTTTCCCAGTAGATCTGCAAAGTGGAGATCTATCTTCACATGTGTGCAAGA TCTCTATGAATTGGCTAGGTAGGGGAACAGAGGAGGAAAAATCGGAGGAAGTGGTGGAGTGGCGGAGCTGTTGGAGTGAT GGGTTGAGACAGGCGCGGTCTATCATGGCTCACCGGAGACAGATGGGAAGGGCAGTGAAAGTGAGAGAAAAAGAGAAGGA TGGAAAGTAAAAAGGAAAAATAGACAATTTGATAATTTAAGTGTGGAATAGTAACTGTACCACCGTGGTTCATTTTGAAA AGCACCCACGGTAGGTGCAGCCACAATTGTGACTTTACTTCATGGACCAATTCATATCAAAAGACCAACGTTTGAGGCTT CAAAGTTCAAATAATAGCCACTTATGATTGATAGCTTTTCGTCCCCTCATTTTTCTTCTTCTTAGTATTGACTTACCTTT CCGATCATTATTAATATCTAATTAAAGCGGGCAGGTATGTGGTAATTAGTAGGGTTCATTGAACATTCAAAGGTGTGGGT CATTTGGACTATTCCATGTGATTTTGATGCACATGCAGCAAAATGTGTAGTAGGTTACCAAATTGATTTGCCTTAACCAC TTCCTTGTTCTTGGGCCCCTGAAGCCTTTAAGATTTTGTTCCTAATTCATGTTTACTTCACAGTTCAAACTGGTTTACCT GCATCATTTTGTTCCTAAACTTTTTAAGCATTAAGAGGACCATGCCTTCTGGAAAATTCTCATAACATGATGTCCGTGAG GATATTAATAATGACAACAATTTCCATATAACCAATTATTGTCTGTTGTCCTTCTCAACTCAACTACCATCCAAATTTCA TCAAAAAAGGAAATTGGAAGCCAGTGCCCAATGAAAATGGTTTACCTCCGGTAAGGAATTCCTTACATTCATGCGGTCAT GTAATTTGAGTTGTCGGGTTAAGATCGGTCAGTTCAAATTTCAATTTTATATCTACCATCAGATATTGATAAAATGTATA AACCGACCGATCTTAATTGGACGACTTAGATTGCGTGGCTGCGTGAATGTAGAGTATCACTAACGGCATAAAATCTGAAT CTCTCTCAAAAACCAAATAAATAGCCATATACCCACCCCATTTATCATTTTTGGCTCTCACTCTAAAATCCCAATGTCCA CAGCTCCTTATCTTATAAATCACAATGCCCACTTCAAACCTTAGCTTATCCTACACAAACCCATCATCATCAACCATGGA CTGGTTCTCATGGTTATCAAGAACAAGTCTTGACCCTTCCCTCATCTATGACTATGGCCTCATCTTCGCCCGGAACGAGC TTCAATTGGAAGATGCAAGCCACTTCAACCATGAGTTTCTTCAGAGCATGGGAGTCTCAATTGCCAAGCACAGGCTAGAA ATTCTCAAGCTTGTAAAGAAGGAACAAGTAGCAGCAGCAGCAAGACCAAAAAAGCTTTCTGGGGTGATCAAGAGGTATCT GAGAAAATGCATGAACAAGTTTGTTTTTCAAGAACAACTTGAAGTGAAAAAGAAGAACTTGCCTGTGTCAGTGCCAGTGC CAGTGCCAGTGACAGTGACACAACCAGAGGGTAATTGGTATCAAGAGAAGTGGAAAGGAGCAATTGTGAAGGAAGAAAGG CAAGTTCCCAAGTACAAAAGCAGGACAATAGCACTTTCAGGACCATTGGATGGAAGAATGCATGAGAAGATGATAAACCA CAATAAGTCCTTGAAGCTATCTGGGCCAATTGATGGAAGAATGAATGAGAGAATGATGATGTACACTAATAGGAGTCCTT TGGTTTCTAAGCCTTTGGAAAGAAGGTTCACAGCACCAAGGAGTCCAAGAGTATCAGGGCCTCTGGATATGATGGTTGAG AATAGAACTCCAAGACTAGCAAGGCCTTCTGATGCAACAAAAGCTGAGAATGAGAACTTGATGGGTTACAGTCCTTATAA CAAGCCTAAAGATGACTATGATTATGATGAGGATGATGATGATCACACACTCTGGCCTACACTGTTTCAGGATCTGAAAC CAACTTGATTATTTTAATTTATCTTTGTTTTCTTGGTGTGTGCCTCATTGGTGAGTGAGGAGAACACTTTTTTTTTCCTT TTATAGTTTATAATAGTAGTGTTACATTAGCATATGAAATCCATATTGTTTTGCTCGGACACTTTCTTTTATTCTATGCA TTCTCTGGTTCTTCAACAATTTGTTTATACATTATTATGTTTCAGCAATTGGTAACATTCTCTGAAGGACTGACAAGCAA GTACAGCTCCACTAAGAGGTCATAAATAATTATATTATCATATTGTAAAGCAACACAGACAACGATTATGGATGAATGTG ATTACC
CDS sequence (LotjaGi4g1v0280900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCCACTTCAAACCTTAGCTTATCCTACACAAACCCATCATCATCAACCATGGACTGGTTCTCATGGTTATCAAGAAC AAGTCTTGACCCTTCCCTCATCTATGACTATGGCCTCATCTTCGCCCGGAACGAGCTTCAATTGGAAGATGCAAGCCACT TCAACCATGAGTTTCTTCAGAGCATGGGAGTCTCAATTGCCAAGCACAGGCTAGAAATTCTCAAGCTTGTAAAGAAGGAA CAAGTAGCAGCAGCAGCAAGACCAAAAAAGCTTTCTGGGGTGATCAAGAGGTATCTGAGAAAATGCATGAACAAGTTTGT TTTTCAAGAACAACTTGAAGTGAAAAAGAAGAACTTGCCTGTGTCAGTGCCAGTGCCAGTGCCAGTGACAGTGACACAAC CAGAGGGTAATTGGTATCAAGAGAAGTGGAAAGGAGCAATTGTGAAGGAAGAAAGGCAAGTTCCCAAGTACAAAAGCAGG ACAATAGCACTTTCAGGACCATTGGATGGAAGAATGCATGAGAAGATGATAAACCACAATAAGTCCTTGAAGCTATCTGG GCCAATTGATGGAAGAATGAATGAGAGAATGATGATGTACACTAATAGGAGTCCTTTGGTTTCTAAGCCTTTGGAAAGAA GGTTCACAGCACCAAGGAGTCCAAGAGTATCAGGGCCTCTGGATATGATGGTTGAGAATAGAACTCCAAGACTAGCAAGG CCTTCTGATGCAACAAAAGCTGAGAATGAGAACTTGATGGGTTACAGTCCTTATAACAAGCCTAAAGATGACTATGATTA TGATGAGGATGATGATGATCACACACTCTGGCCTACACTGTTTCAGGATCTGAAACCAACTTGA
Protein sequence (LotjaGi4g1v0280900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPTSNLSLSYTNPSSSTMDWFSWLSRTSLDPSLIYDYGLIFARNELQLEDASHFNHEFLQSMGVSIAKHRLEILKLVKKE QVAAAARPKKLSGVIKRYLRKCMNKFVFQEQLEVKKKNLPVSVPVPVPVTVTQPEGNWYQEKWKGAIVKEERQVPKYKSR TIALSGPLDGRMHEKMINHNKSLKLSGPIDGRMNERMMMYTNRSPLVSKPLERRFTAPRSPRVSGPLDMMVENRTPRLAR PSDATKAENENLMGYSPYNKPKDDYDYDEDDDDHTLWPTLFQDLKPT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 16 | 85 | 70 | 4.7E-8 | ||
| PANTHER | 18 | 287 | 270 | 2.7E-91 | – | |
| PANTHER | 18 | 287 | 270 | 2.7E-91 | – | |
| CDD | 19 | 79 | 61 | 4.60564E-9 | – | |
| SUPERFAMILY | 22 | 80 | 59 | 2.06E-6 | ||
| MobiDBLite | 238 | 271 | 34 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0280900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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