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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0282100 |
| Transcript ID | LotjaGi4g1v0282100.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phosphatase 2C family protein; TAIR: AT2G25620.1 DNA-binding protein phosphatase 1; Swiss-Prot: sp|Q69QZ0|P2C27_ORYSJ Probable protein phosphatase 2C 27; TrEMBL-Plants: tr|I3S2T9|I3S2T9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0282100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:65336341..65337941) extracted from Lotus japonicus Gifu genome v1.2.
GACCAGATAACATTATATGATGCTATGAATCAAAGTTAGGAGATATAAGATCATGTCTTCCATAATATTTTTCTTGTTTC AATTTTTCCAATGGTGAGATTGTAGTTTTTCTTTTTCATCATTGCCATACTCCTCTTCCCCTTTTAGACCTGAAAAGGTG TGCGTAAAACAAATTATACAAGCTAGAAAAATTCACTCCGGGCAAAAAGAGGATAAACATCTATTAGCCATCTTTTGTAG GGCGATATACATCTTTTCAATCAGGATTTGACATGTAAGGGCAAATGGATTTCTATGCAGGTATTTGATGGACATGGAGG GAAGAGTGCGGCACAATTTGTCCGTGATCATCTGCCGAGGGTGATTGTTGAGGATGCAGACTTCCCTTTGGAACTTGAGA AGGTGGTGACAAAGTCATTTTTGGAGACTGATGCAGAGTTTGCTAAGACATGCTCTAGTGAGTCTTCGGGTACAACTGCA CTCACTGCAATTATATTGGGAAGGTTAGCATTCATCTCCATAGTTCTTATTGCGTGCTTGGATCAGCGTTTGTCACAATA GATTTTGGTAAAATTGATTATACTAAAAATGAGCTGGAAGTGAAGTGAATTACGTTTAGATACATTTATGAAAAAGTGAG TTTTGTTGGATAATGTTGTGAAATTGAGTTGTAAAATCTCACAATTGATTATGTTCAACACAGAAACTACTAGCTCTAGC TTCTACTAGAGTTGATGGCTCTCAAATATCAATATTTTCATCCATAATTGATTTTACTCTACTAAAACTGATTTTGCAGT TTCCCAACGGAAAACCAAACACACTTCTAGGCCTTTATAGCCACATGATAGTGTTCCAACTTCCCAGCTCATTTGTGAAA GGCATACTACTTTAAAGTCAGATGCAGTGTCTAACATCACAAGATCTTTACTTTCAGGATTTATTCTTGTTCACTTATAA TATCAAATAATAGGACCCTGTTGAACTGTTTTGAATAGACATTTGATGCTGCAAAATAAATGTCATTTGTCCTGTTCAGG TCTTTACTTGTAGCCAACGCCGGAGACTGCCGCGCTGTTCTATCCCGGTCTGGAGCGGTCATGGAAATGTCCAAGGATCA CAGGCCCTTGTGCATGAAAGAAAGGACGCGGGTCGAGTCTCTAGGAGGATTCATTGATGACGGCTACCTGAATGGTCAGT TAGGTGTCACTCGTGCTCTAGGCGACTGGCATCTTGAAGGAATGAAGGAAATGAGTGGAAGAGGAGGACCCTTGAGTGCC GAGCCTGAACTTAAACTGGTGACACTGACCAAGGAAGATGAATTCCTGATAATCGGCAGTGATGGAATCTGGGACGTTTT TCGCAGCCAAAATGCCGTTGATTTTGCTCGAAGGAGGCTTCAAGAGCACAATGATGTGAGACAGTGTTGCAAGGAAATTA TAGGGGAAGCAATGAAGAGAGGAGCAACAGACAACTTGACAGTTGTGATGGTGTGTTTTCACTCAGATCCACCACCACCT GTGGTTGTTGAAAGGCCTAGATTCAGGAGAAGTATATCTGCTGAGGGACTGCAGAATCTTAAATGTCTGCTAGAAGGATA G
CDS sequence (LotjaGi4g1v0282100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATGTATTTGATGGACATGGAGGGAAGAGTGCGGCACAATTTGTCCGTGATCATCTGCCGAGGGTGATTGTTGAGGA TGCAGACTTCCCTTTGGAACTTGAGAAGGTGGTGACAAAGTCATTTTTGGAGACTGATGCAGAGTTTGCTAAGACATGCT CTAGTGAGTCTTCGGGTACAACTGCACTCACTGCAATTATATTGGGAAGGTCTTTACTTGTAGCCAACGCCGGAGACTGC CGCGCTGTTCTATCCCGGTCTGGAGCGGTCATGGAAATGTCCAAGGATCACAGGCCCTTGTGCATGAAAGAAAGGACGCG GGTCGAGTCTCTAGGAGGATTCATTGATGACGGCTACCTGAATGGTCAGTTAGGTGTCACTCGTGCTCTAGGCGACTGGC ATCTTGAAGGAATGAAGGAAATGAGTGGAAGAGGAGGACCCTTGAGTGCCGAGCCTGAACTTAAACTGGTGACACTGACC AAGGAAGATGAATTCCTGATAATCGGCAGTGATGGAATCTGGGACGTTTTTCGCAGCCAAAATGCCGTTGATTTTGCTCG AAGGAGGCTTCAAGAGCACAATGATGTGAGACAGTGTTGCAAGGAAATTATAGGGGAAGCAATGAAGAGAGGAGCAACAG ACAACTTGACAGTTGTGATGGTGTGTTTTCACTCAGATCCACCACCACCTGTGGTTGTTGAAAGGCCTAGATTCAGGAGA AGTATATCTGCTGAGGGACTGCAGAATCTTAAATGTCTGCTAGAAGGATAG
Protein sequence (LotjaGi4g1v0282100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNVFDGHGGKSAAQFVRDHLPRVIVEDADFPLELEKVVTKSFLETDAEFAKTCSSESSGTTALTAIILGRSLLVANAGDC RAVLSRSGAVMEMSKDHRPLCMKERTRVESLGGFIDDGYLNGQLGVTRALGDWHLEGMKEMSGRGGPLSAEPELKLVTLT KEDEFLIIGSDGIWDVFRSQNAVDFARRRLQEHNDVRQCCKEIIGEAMKRGATDNLTVVMVCFHSDPPPPVVVERPRFRR SISAEGLQNLKCLLEG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 223 | 223 | 44.052 | ||
| SMART | 1 | 221 | 221 | 1.8E-58 | ||
| Gene3D | 1 | 227 | 227 | 6.0E-73 | ||
| Pfam | 2 | 215 | 214 | 1.3E-62 | ||
| PANTHER | 3 | 238 | 236 | 2.4E-142 | – | |
| CDD | 3 | 223 | 221 | 8.66467E-76 | ||
| PANTHER | 3 | 238 | 236 | 2.4E-142 | ||
| SUPERFAMILY | 3 | 224 | 222 | 9.81E-66 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Protein serine/threonine phosphatase activity | Catalysis of the reaction: protein serine phosphate + H2O = protein serine + phosphate, and protein threonine phosphate + H2O = protein threonine + phosphate. | ||
| Biological process | Protein dephosphorylation | The process of removing one or more phosphoric residues from a protein. |
Expression pattern of LotjaGi4g1v0282100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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