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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0285900 |
Transcript ID | LotjaGi4g1v0285900.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Heavy metal transport/detoxification superfamily protein; TAIR: AT3G04900.1 Heavy metal transport/detoxification superfamily protein; Swiss-Prot: sp|Q9CAV5|HIP42_ARATH Heavy metal-associated isoprenylated plant protein 42; TrEMBL-Plants: tr|G7IP44|G7IP44_MEDTR Heavy-metal-associated domain protein; Found in the gene: LotjaGi4g1v0285900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:65821736..65824285) extracted from Lotus japonicus Gifu genome v1.2.
ATCTCCTATGCTACATTTTGCCTTATATAAGGTGGCTCTACTCTTTCTGCTATTTGGTCCACAAATCAAACTCGTTGTTT CTTGATTTCTCATTGTTCATCAGCAAGAAGTTTTTACTGCTTGAGTGCTATCCACTAATGGAGGACAATCTTGAATCTCC GGTAAGCATGATTCATCATCCCCTTCAGTTTAGTCCATCAAAAGTTTCTTATGTTTCCTTCCCCTGTGTTACTTCCACTC TCATTTTAATTCTTTTCGTTATATACATACCTTCAGATCTCTACTTTGAAAGTTGATTTTGGCTGCTCAAAGAATTGTCC AAATGATGTGAAGATCATGTTGCAACAACTAAAGGGTATTTGATCTTCAACATTTTACTTTTTGTGTAAACTCCTATATT TCAATGTTGTACTGATTTGGATTAATCACGTCTGTTAATTGTGGAAACCCTATTTTCGAAAAAAAAAATCTTATACTGAT TTTGGAACCATTTATTAGTCTTTCTAACATTTCTTCATTACCATATTGTTTGGTTAGAGTTAGAGGGGTTTTTTAAAATT TATCATGTTTGGTTCAATTTTTAGGAAGAGAGGGGACCAAAATCTCTCATAGCTCAATTTTATGTCCCTAAAATATGAAA AATGGGAGGAGAAACATTTTATTGGACAGAAGTACTCTCATTTGCTATCACTTTTCTATGTCCAAAAGGCTTTAACCTAG TTTTGTTTTTACCGTAGTATTTCTTACCGTAGTCGAACAACACCACCTGCTGCATTGTTTTAACAATAGTCACAAACACT TTTTGATCTTTTATACACACGTTCTTTATACCATAAGAACCTTCAAAGCACCTTTTATTAAACCAATTTCTTCTGTAGCA ATGTTAATACTGACAGCCTGACAGGAGAGGTTATAACCAATGAAGTAAAAAATATGTTTTACAATAAGGGTCAAAAAAGT AATTATATTTTTTGAACCAAACACTGGTTTCAGCTTCCTTTCAGGATATATTTTTCAACCTCACAATGTAGGGTGCTCAA TTATGAGAGCATAGGTGAATTATTAAAGGTTTGCATGTTTCAATTGTGTAATGCCTGTCATTTTTCTTATCTTAACAAGA ACCATGCTTCTATTTACTCTTTGCTTAGATTATATTTCTGTTTTTGGTTTTTGGAATAGCTTTCTCATGTTGGATTTTGC ATGTCTCTTTTCCTTTTCGTGGATGTTTAAGGGCTTCATAGCAACTAATCTGTTTTTCAAGATTAAGTGATAGTTGGCAC AGTTTTTAAACTTTGCAGCTTTCACATGTTAAATGTAGATGGATGTAAAGGGTATTTGATCTTCAACATTTTACTTTTTG TGCAAACTCTTAGATTTCAATGTTGTACTGATTTAGATTAGTCACGGCTGTGGCTCAGTGGCTGTCGGAGGTGGAAACCT TATTTTCAAAGTCTTTCTAACATTTTTTCATTTCATACAAAAACAGGAGTGAAATCAATTTCCATTGATCCAAGTGAAGG GAAGGTAACAGTTGCTGGTAATGTTCATCCCATGGTGCTGGTTAAGCTTCTTCAGAAGATGGGGAAAAAGGCAAAACTTT GGTCCTTTGACCAAGGACCAATGCAAAAGAGATCCGGTTCTTCTCATTCAAAACAGAAAGACACTTCCCATGGTTGCTGC GAGGGTTGTCACTCGGAGAACGATTCTGACACTGATTCTGATCATGATTGTGTGCACAGGACACGGCATGGTCATAAGAG CAAGAAAAAGCATAGCCATAAACATAGTTTTGGTTATGAACATGCAGCACCACCACCTGTCCAAGGATATCATCATCCAC CCCCACCACCACCACAGGTCTCAGGATATCATTATCCACCAATGCCAGGGTATCCCCAGCACCAACCATTCTCAGGATAT CATTCTCATCCACAGATGCAGAGGTTCCCACCTATGTCATATGCAGGACCACCACCACCAATGTATCCAGGATCATATCC AGGATCAATGCCCATGTATGGTGGTGGTTACTATGGAAGGGGTCAGCCTGCCGGACCCGCTTATGGAAATTATGGCCCAA GGCAGTCAAGACCCAATCCCATGACCCATTACCGCAGTTATGCAGACAATTATTATCGCTATTAGATGCAATTGTGAGAT TCTAACTCGAATAAGATTGCCTTAGCACAGGATACAATTGTTACTATCTATTTGATCCTGCTGCTCTGGTTTAAATCCAA GATATTATTAGAAATTTTGGATTTACCAAATTTTTCCTTTTCTTTATTTGATGCAATTCTGCTATGCTGCCATCAATTTC ATTTGTTAATGCTACTACCATGCTTATAATATAGGACTACATTTTGCAAGTTTCAGTATATGCATCATTTCTCATGATCA ATATCATCAGTCAGTCCCTCCCTCTCCCTGAGAAAAAATTATGCATATGATCCAAATCCCTCTCAAGTAAAAGAAAACCA GTTGTGCCAGCACTCGGCACAATATCATAAAATCAAGGAAATTCTGACTTAGAATGAGTATGATTATTTC
CDS sequence (LotjaGi4g1v0285900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGACAATCTTGAATCTCCGATCTCTACTTTGAAAGTTGATTTTGGCTGCTCAAAGAATTGTCCAAATGATGTGAA GATCATGTTGCAACAACTAAAGGGAGTGAAATCAATTTCCATTGATCCAAGTGAAGGGAAGGTAACAGTTGCTGGTAATG TTCATCCCATGGTGCTGGTTAAGCTTCTTCAGAAGATGGGGAAAAAGGCAAAACTTTGGTCCTTTGACCAAGGACCAATG CAAAAGAGATCCGGTTCTTCTCATTCAAAACAGAAAGACACTTCCCATGGTTGCTGCGAGGGTTGTCACTCGGAGAACGA TTCTGACACTGATTCTGATCATGATTGTGTGCACAGGACACGGCATGGTCATAAGAGCAAGAAAAAGCATAGCCATAAAC ATAGTTTTGGTTATGAACATGCAGCACCACCACCTGTCCAAGGATATCATCATCCACCCCCACCACCACCACAGGTCTCA GGATATCATTATCCACCAATGCCAGGGTATCCCCAGCACCAACCATTCTCAGGATATCATTCTCATCCACAGATGCAGAG GTTCCCACCTATGTCATATGCAGGACCACCACCACCAATGTATCCAGGATCATATCCAGGATCAATGCCCATGTATGGTG GTGGTTACTATGGAAGGGGTCAGCCTGCCGGACCCGCTTATGGAAATTATGGCCCAAGGCAGTCAAGACCCAATCCCATG ACCCATTACCGCAGTTATGCAGACAATTATTATCGCTATTAG
Protein sequence (LotjaGi4g1v0285900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDNLESPISTLKVDFGCSKNCPNDVKIMLQQLKGVKSISIDPSEGKVTVAGNVHPMVLVKLLQKMGKKAKLWSFDQGPM QKRSGSSHSKQKDTSHGCCEGCHSENDSDTDSDHDCVHRTRHGHKSKKKHSHKHSFGYEHAAPPPVQGYHHPPPPPPQVS GYHYPPMPGYPQHQPFSGYHSHPQMQRFPPMSYAGPPPPMYPGSYPGSMPMYGGGYYGRGQPAGPAYGNYGPRQSRPNPM THYRSYADNYYRY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 3 | 250 | 248 | 3.1E-30 | – | |
PANTHER | 3 | 250 | 248 | 3.1E-30 | – | |
ProSiteProfiles | 9 | 72 | 64 | 9.848 | ||
Gene3D | 9 | 72 | 64 | 2.0E-10 | – | |
CDD | 11 | 71 | 61 | 1.16034E-8 | ||
Pfam | 20 | 69 | 50 | 8.5E-7 | ||
SUPERFAMILY | 20 | 74 | 55 | 1.13E-8 | ||
MobiDBLite | 75 | 164 | 90 | - | – | |
MobiDBLite | 86 | 119 | 34 | - | – | |
MobiDBLite | 120 | 135 | 16 | - | – | |
MobiDBLite | 146 | 164 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi4g1v0285900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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