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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0287800 |
| Transcript ID | LotjaGi4g1v0287800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WRKY transcription factor; TAIR: AT4G30935.1 WRKY DNA-binding protein 32; Swiss-Prot: sp|P59583|WRK32_ARATH Probable WRKY transcription factor 32; TrEMBL-Plants: tr|V7CC73|V7CC73_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0287800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:66019253..66023400) extracted from Lotus japonicus Gifu genome v1.2.
CAGCAGCAGAAGAAAAAGAAAGAGTGAATGAGTTGAGCACCTGATAAGAGTTGAGTCAACGCAAAGTCACACCCCGGCGC AACAACCTCATCATCGCACAGAAACTCTTGCGTTTCGTCAAGCTAGATTCGTCTGTCGCTTTCACAAACCGCTACAAACT TCGTTTTCACTCTCTAACTGTCGCCATGGCTGAGCATCGTCGCAGCTCTGATGCTGTCACAGCGGGAGCACCAGAGCATC CTCACCGGAGAAGAAAGGATTTAGAAGGTGATGGTGGAAGCCGTGTAGATGAAGAAGGGAAGGAAGAAATGGAAGAGGTT GATGAACGAGTTGGTGAATCGCTGGCTGTCACTGAGTTGCAAGGCGGCGAGTTAAGGAGTTCTGATGAACTTCCGGTGGA GTCCAATTTAGTAACCCTAGCTGCTGTACCATCTTCCGCCGTGCAGCATCAGAGTCATCAGAGTGCTGGTATTTGACCAT TTTCAATGAGTCTGTGTTGTCCTTTTTCACTCTCTTTTTTTGTTGTGATTGGTGTGTATGTGTTTGATGTCACAGATTTG CAGGGGAGCTCTGCTACATTGAACTCGAGTGGCAATGTCGAAAGTAAGGTTAGAGAGCATTTACAATAAGAACTTTAATC ATATTGGGATAAAAAATAGAAGAGAAATGATGTTCAGTATGAAATCGAATGTAAAACCAAGTACATAAAATCTCTATTTA TTAATAATAACCATTTGAATGGTGATTAATTGTCATATGTAACACTGGTTCGTGAAATTCGTTTCGGCCTGTGTAGCACT TCCCAAAATAGAAAGGATGATTGTAAATTGTTGTTTTACAGTTTGTGTTCATCTGCTTGAATTTTTCTTCTTTGTTTTGC TTGATGATTTGTCAGAGCCCCATGTTTAGGATCATCTATTAGCCTTCTGAGTTTAATAGATGATCCTTGGTTTTGAATGT GCAGTTTCAGAACAACACAGGTAAATATCAATTTCTGAATTTTAATTTTAAAATGATTGCTAATGCTAAGCTAACTCAAT AAATCATTCCAGCTGGGGGTTAGGACTTGTGAAACTTATTACAGGAATAGACTTCACGGTTCTCCTGTTTCTATTTTTTT CCCCAAGTGAAAATGTAAGTAGATGCTTAGGAAAAAAGAGATCACACTTGCACAGTGCACTGATAAATATACTGATTAGA TAATCCAGACTCATAAAATTCATAAAAAATAATCCAAAATCCTATGGAAGGTGCTTGCTGCGTCCAATAATAGGCGAAGT CCAAAATTGAGACTACAAGTTTTATGCAACTCTTGTATGATGTTTTAGAAGATTCCTAGATTTTTTTTCCCTATCTTAGT GGTTTACACTGCACAATTCTGATTTTTAACTCCGGTATATGATACACCGATGAAGCGTCTATCGAATGGTGCATTAGTAC AAGTGTACAACTATTGTGGACCTATGTTTTGTTTGGGCTTGTGTATGCAAGGGTGACTGGGGTGTGTTAGAGATGTAAAC CGCTCTTAGCCCATCACATCACAGCTTTGGATTTTGGGGTACTTTGCCCTTGATGAGAAACCTATATGCTTAATTTTATA AGTTGGCTTCCAATCTCAATTCAGCCGACATGCGTTTTGATAATGGGTTGAATTTGGGTGTGTGTAAATAAAATGGTTTT ATGAAAAGTTTAGATTAGCAAACATTATTTGAAAGTGCAACCCTGAACCCACAAAAGTGATTTTCTTAAATTCATAGTGA TAGTTAACATCTCCAGGCCAGGGTTGGAATCCTAGGTACACTGAACAAATAATCATTTGATTGCTTTTCTTGTATGAACA ATTAAGCATCAGAAAGTTGCATGTTGTGTGTGTTCCACATATATTTGGTTTCTTTAACACTAAAGTAGGTCATTTCATAA TCAGGAGACAGCTGGACCTCCTGAGAAGGAAATTATTGCAAGAGAAGCAGTCCAGGCACCTCCATCCCAGACAGAATATC AGCTTCAGGTGTCTGTGTGCTCAACGCCATTGTCTGAACTGTCAACAAATTCTGTTACTCAATCTTCCCGTAAACAAAAA ATGACTCCCAGGAGGATGAATAATAATACACATGAGGCACAAGTAGACAAGAAAATTCCTTCTGGTGGTAAAAGCTTATC TGCTGTTTCTGTTGCAAGGACATCAGCATCTGATGGATACAACTGGCGGAAGTATGGTCAAAAGCAAGTAAAGAGTCCTA CAGGTTCTCGAAGCTATTACAGGTGTTCTCATTCAGACTGTTCTGTTAAAAAGATTGAACGCTGTGATCATTCAGGTCAT GTGATAGAAATTGTTTATAAAAGTGAACACAGTCACGATCCCCCACGGAAAACTAATTCCAGTAGGGAAAGCAAGTTTGT GTCTTCAAATGAACCTACTGTAGAGAATAGTGTTCCAAAGAAGCCTATCAGAGTTCTGAAGGATTCTGATCTGTCCATTT CTTCGAAAGATATACAAGCACCTTGGAGTGGTGATAAGAAACGACAAACCTTGTCAAATATCAGTGATAATGGACAAATT ATTTTGAAGGAGGAACATGTAAATGAGCCAGAGCAAAAACGAAGGCAAGTTTGGTTGTTAGTTTATATCCTTCATAAAAA GAAATTACACAATAAGCCCATTTTCTTTTTAATTGTGGTAGGATATAAAGATTTAATGTTCTTTCCTTTAATTTGATAAC CAGAATGAAGAAAAGTGACTTAACAAACTTGGATTCTCCTGTAAAACCTGAAAAGAAAGCCAAGTTTGTTGTACATGCAG CAGGGGACGTGGGGATATCAGGTGATGGATACCGATGGCGCAAGTATGGACAGAAAATGGTGAAGGGGAATCCAAATCCC AGGTTAATGCCTTTTTATATTGCTTGCTTTCTATTCCTTCTTTTTAATTTCAACTTGGCATGAATTTCATATTTTTTTGT TGACAATATCTTTAGATAAAGATGGTGAAGGTTTAGTTGAGTTGTATTTGGATTCAATGGAAGTTTGAAATTAAAGAAAA ACCAATAAAATTATAGAACCATATAAAATGTCACAAACTGTTTTTATTTACCTGTAAGAAGTTTAAAGAAAGGCAATGAG ACATATATCTCATCTCAAGCTAGTTTTTTTACAATATTCCCTCGATCCATATTTTTAACTATAGTCCTAACTGCTGGGCT TCATAAACAATTTCCTATTGGGTTTAGGTTCAAACTTTACTTGAACAAGTCAACAATTCTCATAGTTGTATTCAGTAATT AAGGTTAAAGCACTTTTATTCCGTGCATCTTGTGTCTACTTATTTTATGTTTAGAATATCTGTCATAAAATAGTTGCTAA GAGAGCTTTTAGCTAAAAGGTTGTTTATGTTGACTTATCTTTTTTTTCTTTAATTTGGCCATTGAAATTGAAATCTGTTT TTTCTCTTTCGCTAAACTGCTTGCATTTACAGAAACTACTACAGATGCACTTCTGCTGGATGTCCTGTCCGAAAGCACAT TGAGACTGCTGTAGATAACTCAGATGCTGTCATCATAACATACAAGGGTGTGCATGACCATGAAATGCCTGTGCCCAAGA AACGACATGGTCCCCTAAGAGCTCCTTTTGTGGCTGATGCTGCACCTGCCGCCATGAATAATTTGCCGTCAAAGAATCCC GACTCGCTGCAAAACCAGAAAGCTTCTACTCAATGGTCAGTGGACACAGAAGGTGAACTAACAGGGGAAGCCATGGAACT TGGGGGTGAGAAAGCAATGGAGTCAGCTCGAACGCTTCTGAGCATAGGCTTTGAAATTAAGCCTTGCTGAATTCAGCATT CAGAAATCATGCAGTTGTAATTACATATCAATTGGCAGGTCTCTTGTAATTTCACTGCTTCCCATGTTGATCCTTGTTTC ACTTTTGACATTTTTTATAGTGGAAAAATTGGTGAGTATTTGCTTATTTACCGGTTTAACTTGTCCGAAACAGTTTGCTA GCAGTAGAACGAGTATAGAATTGGCTGGCATTGCTCTGTTCTCATGATTGTCCTAAATGGTTGCGAGCGTCAATCATATC GGATCAAATTTTATAGATGTGAATTAATTTTCACTTAGATCGTCAATGGTAATGGTATATCAATAGAG
CDS sequence (LotjaGi4g1v0287800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGAGCATCGTCGCAGCTCTGATGCTGTCACAGCGGGAGCACCAGAGCATCCTCACCGGAGAAGAAAGGATTTAGA AGGTGATGGTGGAAGCCGTGTAGATGAAGAAGGGAAGGAAGAAATGGAAGAGGTTGATGAACGAGTTGGTGAATCGCTGG CTGTCACTGAGTTGCAAGGCGGCGAGTTAAGGAGTTCTGATGAACTTCCGGTGGAGTCCAATTTAGTAACCCTAGCTGCT GTACCATCTTCCGCCGTGCAGCATCAGAGTCATCAGAGTGCTGATTTGCAGGGGAGCTCTGCTACATTGAACTCGAGTGG CAATGTCGAAAGTAAGGAGACAGCTGGACCTCCTGAGAAGGAAATTATTGCAAGAGAAGCAGTCCAGGCACCTCCATCCC AGACAGAATATCAGCTTCAGGTGTCTGTGTGCTCAACGCCATTGTCTGAACTGTCAACAAATTCTGTTACTCAATCTTCC CGTAAACAAAAAATGACTCCCAGGAGGATGAATAATAATACACATGAGGCACAAGTAGACAAGAAAATTCCTTCTGGTGG TAAAAGCTTATCTGCTGTTTCTGTTGCAAGGACATCAGCATCTGATGGATACAACTGGCGGAAGTATGGTCAAAAGCAAG TAAAGAGTCCTACAGGTTCTCGAAGCTATTACAGGTGTTCTCATTCAGACTGTTCTGTTAAAAAGATTGAACGCTGTGAT CATTCAGGTCATGTGATAGAAATTGTTTATAAAAGTGAACACAGTCACGATCCCCCACGGAAAACTAATTCCAGTAGGGA AAGCAAGTTTGTGTCTTCAAATGAACCTACTGTAGAGAATAGTGTTCCAAAGAAGCCTATCAGAGTTCTGAAGGATTCTG ATCTGTCCATTTCTTCGAAAGATATACAAGCACCTTGGAGTGGTGATAAGAAACGACAAACCTTGTCAAATATCAGTGAT AATGGACAAATTATTTTGAAGGAGGAACATGTAAATGAGCCAGAGCAAAAACGAAGAATGAAGAAAAGTGACTTAACAAA CTTGGATTCTCCTGTAAAACCTGAAAAGAAAGCCAAGTTTGTTGTACATGCAGCAGGGGACGTGGGGATATCAGGTGATG GATACCGATGGCGCAAGTATGGACAGAAAATGGTGAAGGGGAATCCAAATCCCAGAAACTACTACAGATGCACTTCTGCT GGATGTCCTGTCCGAAAGCACATTGAGACTGCTGTAGATAACTCAGATGCTGTCATCATAACATACAAGGGTGTGCATGA CCATGAAATGCCTGTGCCCAAGAAACGACATGGTCCCCTAAGAGCTCCTTTTGTGGCTGATGCTGCACCTGCCGCCATGA ATAATTTGCCGTCAAAGAATCCCGACTCGCTGCAAAACCAGAAAGCTTCTACTCAATGGTCAGTGGACACAGAAGGTGAA CTAACAGGGGAAGCCATGGAACTTGGGGGTGAGAAAGCAATGGAGTCAGCTCGAACGCTTCTGAGCATAGGCTTTGAAAT TAAGCCTTGCTGA
Protein sequence (LotjaGi4g1v0287800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEHRRSSDAVTAGAPEHPHRRRKDLEGDGGSRVDEEGKEEMEEVDERVGESLAVTELQGGELRSSDELPVESNLVTLAA VPSSAVQHQSHQSADLQGSSATLNSSGNVESKETAGPPEKEIIAREAVQAPPSQTEYQLQVSVCSTPLSELSTNSVTQSS RKQKMTPRRMNNNTHEAQVDKKIPSGGKSLSAVSVARTSASDGYNWRKYGQKQVKSPTGSRSYYRCSHSDCSVKKIERCD HSGHVIEIVYKSEHSHDPPRKTNSSRESKFVSSNEPTVENSVPKKPIRVLKDSDLSISSKDIQAPWSGDKKRQTLSNISD NGQIILKEEHVNEPEQKRRMKKSDLTNLDSPVKPEKKAKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPNPRNYYRCTSA GCPVRKHIETAVDNSDAVIITYKGVHDHEMPVPKKRHGPLRAPFVADAAPAAMNNLPSKNPDSLQNQKASTQWSVDTEGE LTGEAMELGGEKAMESARTLLSIGFEIKPC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 70 | 70 | - | – | |
| MobiDBLite | 15 | 38 | 24 | - | – | |
| PANTHER | 68 | 503 | 436 | 2.5E-151 | – | |
| PANTHER | 68 | 503 | 436 | 2.5E-151 | – | |
| MobiDBLite | 82 | 112 | 31 | - | – | |
| MobiDBLite | 82 | 134 | 53 | - | – | |
| MobiDBLite | 152 | 179 | 28 | - | – | |
| MobiDBLite | 152 | 190 | 39 | - | – | |
| Gene3D | 185 | 260 | 76 | 2.7E-23 | ||
| ProSiteProfiles | 195 | 259 | 65 | 19.084 | ||
| SUPERFAMILY | 197 | 259 | 63 | 4.97E-21 | ||
| SMART | 200 | 258 | 59 | 6.7E-25 | ||
| Pfam | 202 | 257 | 56 | 7.9E-19 | ||
| MobiDBLite | 250 | 281 | 32 | - | – | |
| MobiDBLite | 250 | 264 | 15 | - | – | |
| MobiDBLite | 265 | 280 | 16 | - | – | |
| MobiDBLite | 329 | 351 | 23 | - | – | |
| Gene3D | 356 | 432 | 77 | 1.1E-28 | ||
| ProSiteProfiles | 366 | 431 | 66 | 31.732 | ||
| SUPERFAMILY | 367 | 431 | 65 | 1.29E-26 | ||
| SMART | 371 | 430 | 60 | 1.6E-34 | ||
| Pfam | 373 | 429 | 57 | 2.1E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi4g1v0287800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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