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LotjaGi4g1v0288000.1

Overview

Field Value
Gene ID LotjaGi4g1v0288000
Transcript ID LotjaGi4g1v0288000.1
Related isoforms 5
Lotus japonicus genome version Gifu v1.2
Description DNAse I-like superfamily protein; TAIR: AT4G30900.1 DNAse I-like superfamily protein; Swiss-Prot: sp|Q5UQW5|YL388_MIMIV Uncharacterized protein L388; TrEMBL-Plants: tr|I1JGP9|I1JGP9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0288000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:66038485..66043243) extracted from Lotus japonicus Gifu genome v1.2.

CAGTCAATCCCTAGGACACTAGACACTAGATTCCTTAATTTTAATTGTCATCATAGTTCATAGAATGGAGCTTTTTTTAA TGGAGCATCAGCATGAGCTAGCTAACCTTGGACTTTGCTAACTTCAGTTCAGACACCAAACACAACACAAACCTCTCTCT CTCTCTCTCTCTCTCTCTCTCTCTCTCCTTTCAGATTTTCACACCAACCTACAAGAAAAAAGAAGAAAAAAAAAACCCTT TATTGAGCTGTCTGGCATTGGATTCAAAGGGAGATAGATTCCACCCTGTTCCAGTTTTGTTGTTTTCTGAAGCATTCATT TTATTCATTTGAATCGATATGAAGTAGTAGAGAGAACAAGAAGAAGGGAAAATAGAGAGATTGTTACAGGTTGAAGAAAA TGAGTGTGTCTTTGACTGTGATGACTTTCAATCTCCATGATGATCAGCCACCAGATAGTCCTAATTCGTGGGAGAAGAGA AGGGACATTTGTATTAGCGTTATTACCAGTTACTCTCCCTTCATCCTCTGTACCCAACAAGGTTTTCACTTTTTCTTCTT CGTGTATTATATTTCTCTGGATGCTCCTCCAATGCCTGTGTTCCTTTGTGGATCTTAATTTTCATCTGGGGTTGCTAAAA TGATTGCTTTGCTAGCTTTTTTTTGGGATTGGGGTTTTGATGGATCATTCTGGATCCTATTTGGTGAAGCTGGCTTTCAA TAAGCGATTGCTTGTTTTGTTTACATGCGTTTTTTTGGGGTGTGGGGTGTTGATTGTTTGATTTGAAGATTTTTGCTTTG CTTGTCTATCATGGTGTTCTTAGCTTGCTTGTCCACCCTTCCCTTCTCTTGTTCTCTCACCTTGGATTGTTTGATCTGGG TGCTTCTGTTTTTTCCTTACAAAAATTGATGGCATTTTACCAGCTTGTTCATTGATTGTTCTGATTCACTTTTATTTATC CTTTACACTGTTTTGATTTGCATCTGGATTCAGGAGTCAAAGCTCAATTGGATTTTCTCCAGCAGGGTTTGCCAGGTAAC AATTTTTTTGAGTATGTGGTTCTAGGTTCAGAAAGGATTGGTTTATAGTTCTCAAATTCATTACATGTTTGGTTGGTCAC AAGCATATTTGTAACTTATTCGATAATGTATGTGCCGCAAGCCATAGTCATGGCCTTGGTAAAGGATTTATATCATACGG TATTGGTTATGAAGAGAAATATGTCTAGAAGGTGCTTTTTATTTTCACATAGTACTTTAGAGTTAAGGTCGGCTCAAATA TTTAGTAATACTAATACTCGCTATGTATATGTTCTTATGTAAAGAGTGTGTAGTTCATTCAATAATGTCAAGAAGGTTAG GCAAAATAATATTCTAACTAGAATGAGAAACTAGAGTATAAATAGGCAGATTCTCTCCCTGCTGTCAAATTTATATACAA AAGGAACTTGAAAAGAAGTTTTATGGACTTTATTGAGATTTCACTTATTACAAAACGATCAAAATATCTTAAATGTCAGT TTGTTCGGCCAATAGTTGTGTTGGAGTGGTTTGAGCAAGCATGCCTATGTATTTGTTTTGGGAAATGATACCATTTATCT CTAGTAACTATGCTTTCTTCATTATTTAGTCACTTTAATTAGCTTGTTTTATGCTCATGTTGAAAAGTTTTAGCTCAAAT TACTGGCTTCCTTTGTTGACGAACATATGAATTGATGTTCAAGGCTGACTTTAAAAGTGCTAAAAAAGTGATACTTGGAG TCCTAAGCAAGATATGACAACACTCATAGAAATTTGGGTCAGGTAGCTCTATCCCAAAAGCCAAATAAAGGTGAGGATTG CTCAGGCCAGACATCTCAAGCTAGAATTGCTGACGCGATATTGTCGCGAATGCCCTTTACACCTGCTATGGATACCTTCG AGGCTAGATTCACTTTCATTGAATTCTCGTGGAATAGTCACATGCTAGATTGACCTCATTAATTGTTCTTTTTTGGAATA ACCATCGGTTAGGTTGACTCTCAAAATCATGGGCAGTCCAATAACGAATCTAGGATAGGCTTTGTTACCATCTTGAGAAT TTGGGCCAGGCCTAACTTAACTCTAAAAATCTAGTTCACAGGTGAGGACTTCCCAACTCTTTATGAGTACTTATTTGGCC TATAGTCAAATATGGCACCTTAACACCCCCCTCACACCCAAGGCTAGCTCTAGACTAGATTGACTTTATTAATTTTTTTC CGGAGGAACTGTGAGTCTGGTTCAGTTAGGCTTTGTCCAAATTACCAATATGGTATCAGAGCCTACTTAGATTCATTATT AGGCCACCTTGACTCGCATTGAATTAACCATTCTTTTAAGGATAAAGGACTAGACCATACGTCTTGTCTATGACGGACCT TAACGTTATCATGAAACTACGTCTTCAAGCACCAATTCTACAATTTGTACTTATAAGCTCCTTATGGCAACTAGAAACTA GCTATAATGAGGAAAACAAATGCTCTTTACTAGAATGATACCTGTGATCCTTGTCTTCCCACCACATGAAAATATTGTTT GTTTAGGTGAGCTTGCAAGATCAAATACAACTCAGATAGTTTTTTGTATAGAAGTATAAAGTGCTCATAGAAAATGTCTT TTTATTAAATTTAAAAAATCAGTGGCAGCGCTTGTTGCTCAATGTAAAAAAAGTGTTCTATATTATGTAAAGATGTCAGT TTCTATCTTGTTACTAGAAAGGGTGCTGTTTTCATGGACTTGCAGGAGGCACCAGCCCATGTTCCCATGAGATATCGTGA ATACTTCACTTTAATACTTTTTTCTCTCTTAAAATAAGTGGACTATTGTCAAGCAATTTCAGTTTAACCCTTTTTGTGCT TGATATTACTCCATTTCTAAACGGATTCTTCTACTTTGATAAAAATAAATACTAGGTTATGATCAGTTCGGCATATCTCG AAAAGGGCCACAAGATAGTTCTGACGAGCATTGCACTATATTCTATGATAAGGAAAAGGTATGAGGTTATTTCAGAATTA TCTGTTATAATTTCTTATTTAACTAGTAGGACTGTAGGAGAACAAAGTGGTTCACAGTTTTTTATTTTTTATTTTTTATT TTTTATTTTACTTTAATGAAGGTAGAGCTTCTGGAAGGTGGAACCTTTTGGTTGTCCGAGTCTCCCTCTGTACCTGGAAG CATGTCATGGGGTTCTGAAGTTCCTTGCATTGCAACATGGGCTATATCCTTATGATTTAGAAAAGAAATTATAGCTTCAA TCGTTTACGAACTGTTTTTTTTTTACCTTTGCTGCACAACCTTTAAAATCATTTTTCTTTGACATGATGTCCACACATTT CAACTTAAAGGAGTTGAGCTACCAGGATTCTCGTTTCAGATAGTAAATACAAACATGGATGAATTCAGTCCTCGTGCCCG TAGAAGAAGTGCTTTACTCACATGGCAACACATTGCATCCTTACCTCCTAGCCTGCCAGTTGTGTACTGTGGAGGATTCA ACACACAAAAGGAATCAACTACTGGACGCTTTCTTCTCGGAAGATCGAGGTAGTTTCTTACTACATACCTTTCCAATTAT TAGTTGTTCTCAATTATAGAATTTTTCACATTCATATTTTCCGTAGTGCGTGGTGAACATATTTTGTTATTCATTAAGTT GGATTCTGTGATGAGACTACAAGAGTAGTGTAACTTGTGTGTTTACTCTGATTGAGTGCAGAGAGCATGGTGTTGTTGGA GATATGCGGGATGCATGGCCTAGTTCTCGTGTGCGGAAAAATGTTTCACTAATCCGCACTTATCATGGGTTCAAGGGTAC TATTTTTGGTGCTTCTACTCTGTTATTCTGAGCATGATATTACTGTTTTGATTACTGAGTGTTATCTCGTGCTGTTAGGT GAAAAACAAGGAACCCTTGAGTACCTCAAGTTGATCTTTAGAGCCCTCTGCCTCTGCTGGGATCGCCAAACGCAGGATCT TCATATTGATTGGATCTTTTTCAGAGGGAGATCTCTGATTCCGGTTTCATGTGAAGTGGTGAATGATAACATTGATGGTT TTTATCCATCATCTCATTTTCCTATATTTGCTGAGTTCATGCTTCCTCGGACCGTAAGAATGCTAGAATCACCCGTGCAA GAGGATAGCTAAATTTCTATTTCTTGCCATATCTGGGTTTATTCCTCTTTGAGCTGTATCATCCATCATGAATGTCTTCT GCAGTTATATTTGGGGTTTGTAGTAATACTGCAACGGTGGCGGTGGAGACGGCGGCTATTGAAGTATGCTTGTGCTTCAG AGAAATGTGGTCACATCATACCAGGCAAATCTGTTAGCTGAATGCTGCCTCCACAACTGAGGATCACGTGTTGAAACAGA CTTCCTTTGCTTGTAAACTTTTGTCGTCCCTAGTGTTTCTTTCTCAAATGCTCTTCTAAATTTGATTTAAGAATGTTATG ATATTTGTGACATTTGAGTATTGTCACAAAAGATTATATGGCGCCAAAGATTGTTATATGATTATTCATCGATTGAAGTA ACTGATGCAACTTCGTCCTTAAAATTGATGGGGTGTGTTTGCACTAACATGGCGTATGGAAATGAAGGATCCAAAAAAAT ATTACTTATAATTTCTTTTAAAATAATTACCATGACCTCAGGTAAATGAAAAAATCATTTTTTTTAAAGTGAAAAAAACA AATTCAACTAATGCAATGAATATGACTATTGTTTAGTGC
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0288000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGTGTGTCTTTGACTGTGATGACTTTCAATCTCCATGATGATCAGCCACCAGATAGTCCTAATTCGTGGGAGAAGAG AAGGGACATTTGTATTAGCGTTATTACCAGTTACTCTCCCTTCATCCTCTGTACCCAACAAGGAGTCAAAGCTCAATTGG ATTTTCTCCAGCAGGGTTTGCCAGGTTATGATCAGTTCGGCATATCTCGAAAAGGGCCACAAGATAGTTCTGACGAGCAT TGCACTATATTCTATGATAAGGAAAAGGTAGAGCTTCTGGAAGGTGGAACCTTTTGGTTGTCCGAGTCTCCCTCTGTACC TGGAAGCATGTCATGGGGTTCTGAAGTTCCTTGCATTGCAACATGGGCTACATTTCAACTTAAAGGAGTTGAGCTACCAG GATTCTCGTTTCAGATAGTAAATACAAACATGGATGAATTCAGTCCTCGTGCCCGTAGAAGAAGTGCTTTACTCACATGG CAACACATTGCATCCTTACCTCCTAGCCTGCCAGTTGTGTACTGTGGAGGATTCAACACACAAAAGGAATCAACTACTGG ACGCTTTCTTCTCGGAAGATCGAGAGAGCATGGTGTTGTTGGAGATATGCGGGATGCATGGCCTAGTTCTCGTGTGCGGA AAAATGTTTCACTAATCCGCACTTATCATGGGTTCAAGGGTGAAAAACAAGGAACCCTTGAGTACCTCAAGTTGATCTTT AGAGCCCTCTGCCTCTGCTGGGATCGCCAAACGCAGGATCTTCATATTGATTGGATCTTTTTCAGAGGGAGATCTCTGAT TCCGGTTTCATGTGAAGTGGTGAATGATAACATTGATGGTTTTTATCCATCATCTCATTTTCCTATATTTGCTGAGTTCA TGCTTCCTCGGACCGTAAGAATGCTAGAATCACCCGTGCAAGAGGATAGCTAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0288000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSVSLTVMTFNLHDDQPPDSPNSWEKRRDICISVITSYSPFILCTQQGVKAQLDFLQQGLPGYDQFGISRKGPQDSSDEH CTIFYDKEKVELLEGGTFWLSESPSVPGSMSWGSEVPCIATWATFQLKGVELPGFSFQIVNTNMDEFSPRARRRSALLTW QHIASLPPSLPVVYCGGFNTQKESTTGRFLLGRSREHGVVGDMRDAWPSSRVRKNVSLIRTYHGFKGEKQGTLEYLKLIF RALCLCWDRQTQDLHIDWIFFRGRSLIPVSCEVVNDNIDGFYPSSHFPIFAEFMLPRTVRMLESPVQEDS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12121:SF84
2 303 302 3.5E-98 –
PANTHER
PTHR12121
2 303 302 3.5E-98 –
Gene3D
G3DSA:3.60.10.10
3 300 298 1.2E-61
IPR036691
SUPERFAMILY
SSF56219
4 291 288 1.83E-27
IPR036691
CDD
cd09083
6 293 288 3.22216E-101 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0288000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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