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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0288000 |
Transcript ID | LotjaGi4g1v0288000.3 |
Related isoforms 5 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | DNAse I-like superfamily protein; TAIR: AT4G30900.1 DNAse I-like superfamily protein; Swiss-Prot: sp|Q24239|ANGEL_DROME Protein angel; TrEMBL-Plants: tr|A0A0R0F9S5|A0A0R0F9S5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0288000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:66038884..66042656) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGTGTGTCTTTGACTGTGATGACTTTCAATCTCCATGATGATCAGCCACCAGATAGTCCTAATTCGTGGGAGAAGAG AAGGGACATTTGTATTAGCGTTATTACCAGTTACTCTCCCTTCATCCTCTGTACCCAACAAGGTTTTCACTTTTTCTTCT TCGTGTATTATATTTCTCTGGATGCTCCTCCAATGCCTGTGTTCCTTTGTGGATCTTAATTTTCATCTGGGGTTGCTAAA ATGATTGCTTTGCTAGCTTTTTTTTGGGATTGGGGTTTTGATGGATCATTCTGGATCCTATTTGGTGAAGCTGGCTTTCA ATAAGCGATTGCTTGTTTTGTTTACATGCGTTTTTTTGGGGTGTGGGGTGTTGATTGTTTGATTTGAAGATTTTTGCTTT GCTTGTCTATCATGGTGTTCTTAGCTTGCTTGTCCACCCTTCCCTTCTCTTGTTCTCTCACCTTGGATTGTTTGATCTGG GTGCTTCTGTTTTTTCCTTACAAAAATTGATGGCATTTTACCAGCTTGTTCATTGATTGTTCTGATTCACTTTTATTTAT CCTTTACACTGTTTTGATTTGCATCTGGATTCAGGAGTCAAAGCTCAATTGGATTTTCTCCAGCAGGGTTTGCCAGGTAA CAATTTTTTTGAGTATGTGGTTCTAGGTTCAGAAAGGATTGGTTTATAGTTCTCAAATTCATTACATGTTTGGTTGGTCA CAAGCATATTTGTAACTTATTCGATAATGTATGTGCCGCAAGCCATAGTCATGGCCTTGGTAAAGGATTTATATCATACG GTATTGGTTATGAAGAGAAATATGTCTAGAAGGTGCTTTTTATTTTCACATAGTACTTTAGAGTTAAGGTCGGCTCAAAT ATTTAGTAATACTAATACTCGCTATGTATATGTTCTTATGTAAAGAGTGTGTAGTTCATTCAATAATGTCAAGAAGGTTA GGCAAAATAATATTCTAACTAGAATGAGAAACTAGAGTATAAATAGGCAGATTCTCTCCCTGCTGTCAAATTTATATACA AAAGGAACTTGAAAAGAAGTTTTATGGACTTTATTGAGATTTCACTTATTACAAAACGATCAAAATATCTTAAATGTCAG TTTGTTCGGCCAATAGTTGTGTTGGAGTGGTTTGAGCAAGCATGCCTATGTATTTGTTTTGGGAAATGATACCATTTATC TCTAGTAACTATGCTTTCTTCATTATTTAGTCACTTTAATTAGCTTGTTTTATGCTCATGTTGAAAAGTTTTAGCTCAAA TTACTGGCTTCCTTTGTTGACGAACATATGAATTGATGTTCAAGGCTGACTTTAAAAGTGCTAAAAAAGTGATACTTGGA GTCCTAAGCAAGATATGACAACACTCATAGAAATTTGGGTCAGGTAGCTCTATCCCAAAAGCCAAATAAAGGTGAGGATT GCTCAGGCCAGACATCTCAAGCTAGAATTGCTGACGCGATATTGTCGCGAATGCCCTTTACACCTGCTATGGATACCTTC GAGGCTAGATTCACTTTCATTGAATTCTCGTGGAATAGTCACATGCTAGATTGACCTCATTAATTGTTCTTTTTTGGAAT AACCATCGGTTAGGTTGACTCTCAAAATCATGGGCAGTCCAATAACGAATCTAGGATAGGCTTTGTTACCATCTTGAGAA TTTGGGCCAGGCCTAACTTAACTCTAAAAATCTAGTTCACAGGTGAGGACTTCCCAACTCTTTATGAGTACTTATTTGGC CTATAGTCAAATATGGCACCTTAACACCCCCCTCACACCCAAGGCTAGCTCTAGACTAGATTGACTTTATTAATTTTTTT CCGGAGGAACTGTGAGTCTGGTTCAGTTAGGCTTTGTCCAAATTACCAATATGGTATCAGAGCCTACTTAGATTCATTAT TAGGCCACCTTGACTCGCATTGAATTAACCATTCTTTTAAGGATAAAGGACTAGACCATACGTCTTGTCTATGACGGACC TTAACGTTATCATGAAACTACGTCTTCAAGCACCAATTCTACAATTTGTACTTATAAGCTCCTTATGGCAACTAGAAACT AGCTATAATGAGGAAAACAAATGCTCTTTACTAGAATGATACCTGTGATCCTTGTCTTCCCACCACATGAAAATATTGTT TGTTTAGGTGAGCTTGCAAGATCAAATACAACTCAGATAGTTTTTTGTATAGAAGTATAAAGTGCTCATAGAAAATGTCT TTTTATTAAATTTAAAAAATCAGTGGCAGCGCTTGTTGCTCAATGTAAAAAAAGTGTTCTATATTATGTAAAGATGTCAG TTTCTATCTTGTTACTAGAAAGGGTGCTGTTTTCATGGACTTGCAGGAGGCACCAGCCCATGTTCCCATGAGATATCGTG AATACTTCACTTTAATACTTTTTTCTCTCTTAAAATAAGTGGACTATTGTCAAGCAATTTCAGTTTAACCCTTTTTGTGC TTGATATTACTCCATTTCTAAACGGATTCTTCTACTTTGATAAAAATAAATACTAGGTTATGATCAGTTCGGCATATCTC GAAAAGGGCCACAAGATAGTTCTGACGAGCATTGCACTATATTCTATGATAAGGAAAAGGTATGAGGTTATTTCAGAATT ATCTGTTATAATTTCTTATTTAACTAGTAGGACTGTAGGAGAACAAAGTGGTTCACAGTTTTTTATTTTTTATTTTTTAT TTTTTATTTTACTTTAATGAAGGTAGAGCTTCTGGAAGGTGGAACCTTTTGGTTGTCCGAGTCTCCCTCTGTACCTGGAA GCATGTCATGGGGTTCTGAAGTTCCTTGCATTGCAACATGGGCTATATCCTTATGATTTAGAAAAGAAATTATAGCTTCA ATCGTTTACGAACTGTTTTTTTTTTACCTTTGCTGCACAACCTTTAAAATCATTTTTCTTTGACATGATGTCCACACATT TCAACTTAAAGGAGTTGAGCTACCAGGATTCTCGTTTCAGATAGTAAATACAAACATGGATGAATTCAGTCCTCGTGCCC GTAGAAGAAGTGCTTTACTCACATGGCAACACATTGCATCCTTACCTCCTAGCCTGCCAGTTGTGTACTGTGGAGGATTC AACACACAAAAGGAATCAACTACTGGACGCTTTCTTCTCGGAAGATCGAGGTAGTTTCTTACTACATACCTTTCCAATTA TTAGTTGTTCTCAATTATAGAATTTTTCACATTCATATTTTCCGTAGTGCGTGGTGAACATATTTTGTTATTCATTAAGT TGGATTCTGTGATGAGACTACAAGAGTAGTGTAACTTGTGTGTTTACTCTGATTGAGTGCAGAGAGCATGGTGTTGTTGG AGATATGCGGGATGCATGGCCTAGTTCTCGTGTGCGGAAAAATGTTTCACTAATCCGCACTTATCATGGGTTCAAGGGTA CTATTTTTGGTGCTTCTACTCTGTTATTCTGAGCATGATATTACTGTTTTGATTACTGAGTGTTATCTCGTGCTGTTAGG TGAAAAACAAGGAACCCTTGAGTACCTCAAGTTGATCTTTAGAGCCCTCTGCCTCTGCTGGGATCGCCAAACGCAGGATC TTCATATTGATTGGATCTTTTTCAGAGGGAGATCTCTGATTCCGGTTTCATGTGAAGTGGTGAATGATAACATTGATGGT TTTTATCCATCATCTCATTTTCCTATATTTGCTGAGTTCATGCTTCCTCGGACCGTAAGAATGCTAGAATCACCCGTGCA AGAGGATAGCTAA
CDS sequence (LotjaGi4g1v0288000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTGTGTCTTTGACTGTGATGACTTTCAATCTCCATGATGATCAGCCACCAGATAGTCCTAATTCGTGGGAGAAGAG AAGGGACATTTGTATTAGCGTTATTACCAGTTACTCTCCCTTCATCCTCTGTACCCAACAAGGTTATGATCAGTTCGGCA TATCTCGAAAAGGGCCACAAGATAGTTCTGACGAGCATTGCACTATATTCTATGATAAGGAAAAGGTAGAGCTTCTGGAA GGTGGAACCTTTTGGTTGTCCGAGTCTCCCTCTGTACCTGGAAGCATGTCATGGGGTTCTGAAGTTCCTTGCATTGCAAC ATGGGCTACATTTCAACTTAAAGGAGTTGAGCTACCAGGATTCTCGTTTCAGATAGTAAATACAAACATGGATGAATTCA GTCCTCGTGCCCGTAGAAGAAGTGCTTTACTCACATGGCAACACATTGCATCCTTACCTCCTAGCCTGCCAGTTGTGTAC TGTGGAGGATTCAACACACAAAAGGAATCAACTACTGGACGCTTTCTTCTCGGAAGATCGAGAGAGCATGGTGTTGTTGG AGATATGCGGGATGCATGGCCTAGTTCTCGTGTGCGGAAAAATGTTTCACTAATCCGCACTTATCATGGGTTCAAGGGTG AAAAACAAGGAACCCTTGAGTACCTCAAGTTGATCTTTAGAGCCCTCTGCCTCTGCTGGGATCGCCAAACGCAGGATCTT CATATTGATTGGATCTTTTTCAGAGGGAGATCTCTGATTCCGGTTTCATGTGAAGTGGTGAATGATAACATTGATGGTTT TTATCCATCATCTCATTTTCCTATATTTGCTGAGTTCATGCTTCCTCGGACCGTAAGAATGCTAGAATCACCCGTGCAAG AGGATAGCTAA
Protein sequence (LotjaGi4g1v0288000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSVSLTVMTFNLHDDQPPDSPNSWEKRRDICISVITSYSPFILCTQQGYDQFGISRKGPQDSSDEHCTIFYDKEKVELLE GGTFWLSESPSVPGSMSWGSEVPCIATWATFQLKGVELPGFSFQIVNTNMDEFSPRARRRSALLTWQHIASLPPSLPVVY CGGFNTQKESTTGRFLLGRSREHGVVGDMRDAWPSSRVRKNVSLIRTYHGFKGEKQGTLEYLKLIFRALCLCWDRQTQDL HIDWIFFRGRSLIPVSCEVVNDNIDGFYPSSHFPIFAEFMLPRTVRMLESPVQEDS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 2 | 289 | 288 | 1.3E-91 | – | |
PANTHER | 2 | 289 | 288 | 1.3E-91 | – | |
SUPERFAMILY | 4 | 277 | 274 | 3.66E-25 | ||
CDD | 6 | 279 | 274 | 1.14056E-90 | – | |
Gene3D | 6 | 284 | 279 | 5.8E-53 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0288000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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