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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0290000 |
| Transcript ID | LotjaGi4g1v0290000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calcineurin subunit B; TAIR: AT3G18430.1 Calcium-binding EF-hand family protein; Swiss-Prot: sp|P42322|CANB1_NAEGR Calcineurin subunit B; TrEMBL-Plants: tr|I3SYK1|I3SYK1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0290000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:66238600..66240340) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGAAACACCTCCTCCATGCTCACACAGTACGACATTGAAGAAGTTCAAGAACACTGCAAACACGCATGTAATGCATG CTATTCACCTTGTTCAATCCATTTTTTGAATTTCTTTTTTTGATTTTTGATTTTTGATTTTCAATTCTCTTCCGATTTGT GTGCAGTTTCGCAGCAAGAGATCGTTTCTCTGTATCAACGATTCTGTCAACTCGATCGGAACAATTGCGGCTTCATTTCC TCCGATGAGTTTCTCTCCATTCCTGAATTCGCCGTCAATCCTCTCTCTCAGGTCAATCTCCCTCTCCCTCACTCTCTTGC TATAACTGGAATTGAATAGAATGTTGATTTTGAATGTGAGTGAATGATTGAATTGAAGTGTTAATAATATTTCAGAGTTT GTTGAGAATGCTGGATGGCTTGAACTTCAAGGAGTTTGTGTTATTTTTGTCTGCGTTTGGTCCTGGTGCCACTCTCCAAC ACAAAATTGAATGTAATATTGTTGATACGAAAATGTGGAATGATTTTTTATTTTTTCTCTGAATTCATTTGATGTAAGAT TGATTATCAGTGAAGTATTGCATTGGATTGATTTTTGTTTTTGTTTTTCTAGTTATTTTCAAGGTTTATGATACGGATTG CAATGGAAAAGTCACATTTGGTGACATTTTGAAGGTTTTGAGGGACATGACTGGACAATATATCTCTGAACAACAGAGAG AGGTCACATTTGTTTACAACTTACTTCTTGGTGATTTTGTTTTGGTTTTCTGCTTTGTATGTGGGAATTTGTTGGCATTT CACTGTCACCTTCCTAGTTATCTACCACAGAATGCAAGTGTTCACTCGGGGGGGAAACGCTTGAATTTTTACTGTTTGAT TTTGTCAATTGGAACTGATTTTGGGAATTGGATGTCTCTAGGATAAACCATGTCGATTATAAGATTGGATATAAGAAGAG TATTCGCAAGTTTATTGAATTATACCTGGATATTTTGGAATACAATGGGCATGTTTCTTTCCATTTTCACTTACCATATT CAGTTTTGATTACATAAATGTAACCTTATTTTCCTAATTTCCTTTTGTTTTCTGTTTTCAAAGTTGTGTAGAACTCTATT TGACGTACAAATTTTACTGTTTTCAGGAAACAAGGTGAAAACTATGTGGTGTGTTGTAATTAAAACTGAAAATAAGAAGT AGAAACATAAGAGTAGTTTTCTGAAATCAAACATGTCCTTAGTAAAAGATAATATATAACCTTTTAAGAGATGAGATAAC CTTTTTTTGAAAACTTGGTCACCTTTATAAGTCTCAACTTTTAATGTTTAATGTCTTATTGCACTTTTCATCCTTTCCAA ATATAGGCATTTAGTGTCGGCAACTATTTCCAGGTTAAAGAAATATCATTGAAAAAAAAACTAAAAAACAAAAGCACATG ATTGTATTCTTTCTTAATAAAGAATAGCATTTATATGAAGTGGGTTATCTGTGTGTATTTACTGTTGAAAATATGTAAAT GAGGTTGAGAATGGACTTGTTTTGGTGGATGTCACTTTTTTTTTACTTGATCTTCTTGTAATCTCTGATGTATTCTGTTT CCTTTGTGTACACAGGAAGTTCTGACAAAGGTCCTTGAGGAAGCTGGCTATAAAAAGGATTCTTTTTTAGTCTTGTCTGA CTTCATGAAGGTACTGAAACAGAAAATATATAGCATGACTTGCTCCACTGGAATTCTTTAG
CDS sequence (LotjaGi4g1v0290000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAACACCTCCTCCATGCTCACACAGTACGACATTGAAGAAGTTCAAGAACACTGCAAACACGCATTTTCGCAGCA AGAGATCGTTTCTCTGTATCAACGATTCTGTCAACTCGATCGGAACAATTGCGGCTTCATTTCCTCCGATGAGTTTCTCT CCATTCCTGAATTCGCCGTCAATCCTCTCTCTCAGAGTTTGTTGAGAATGCTGGATGGCTTGAACTTCAAGGAGTTTGTG TTATTTTTGTCTGCGTTTGGTCCTGGTGCCACTCTCCAACACAAAATTGAATTTATTTTCAAGGTTTATGATACGGATTG CAATGGAAAAGTCACATTTGGTGACATTTTGAAGGTTTTGAGGGACATGACTGGACAATATATCTCTGAACAACAGAGAG AGGAAGTTCTGACAAAGGTCCTTGAGGAAGCTGGCTATAAAAAGGATTCTTTTTTAGTCTTGTCTGACTTCATGAAGGTA CTGAAACAGAAAATATATAGCATGACTTGCTCCACTGGAATTCTTTAG
Protein sequence (LotjaGi4g1v0290000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGNTSSMLTQYDIEEVQEHCKHAFSQQEIVSLYQRFCQLDRNNCGFISSDEFLSIPEFAVNPLSQSLLRMLDGLNFKEFV LFLSAFGPGATLQHKIEFIFKVYDTDCNGKVTFGDILKVLRDMTGQYISEQQREEVLTKVLEEAGYKKDSFLVLSDFMKV LKQKIYSMTCSTGIL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 171 | 171 | 5.2E-96 | – | |
| PANTHER | 1 | 171 | 171 | 5.2E-96 | – | |
| SUPERFAMILY | 1 | 163 | 163 | 4.58E-28 | ||
| Gene3D | 2 | 172 | 171 | 4.8E-37 | – | |
| ProSiteProfiles | 27 | 62 | 36 | 8.962 | ||
| Pfam | 32 | 119 | 88 | 9.3E-10 | ||
| ProSiteProfiles | 74 | 89 | 16 | 5.113 | ||
| ProSiteProfiles | 91 | 126 | 36 | 12.226 | ||
| ProSitePatterns | 104 | 116 | 13 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). |
Expression pattern of LotjaGi4g1v0290000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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