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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0291200 |
| Transcript ID | LotjaGi4g1v0291200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nuclear pore complex protein nup43; TAIR: AT4G30840.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q24JJ9|NUP43_ARATH Nuclear pore complex protein NUP43; TrEMBL-Plants: tr|V7CC45|V7CC45_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0291200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:66302653..66303428) extracted from Lotus japonicus Gifu genome v1.2.
TTTCTGGAATGGTAATGTATTCTCAGGCTGGTGGCTCCTTAGGCACTGTTTTTGCGTGGGATCTTAGGTGGCAACAACAA CCGATTGTACTTGCGGGATCAGCAGCAGGGGCTGGGGCTGTGGACACTACAGTGCAGTCAATATCTGAAAGTGAGGTTTG GGAGGTGCAGTATGATCGCTGCATTAAATCAAACGCTTCATCTACCCGGATCTTACCTGCCATGATCTGTTCAGAGGATG GAATTCTTGCTGTGGCTGAGCAAGGTATATATGTTCATCCCGATTTCCTTCATGTTAAAATGCCATTTCATCATGAATGA GATCTCGTACATTGTTTGTTTACAAGTTAATGGAGTCTTCATCCATGTCTATTGAACAAGAGAAGTTTATTGAAATGGGG AGTGAGATTGATTAGGTGCATCTCTAATGTAATTGAATTCTTACATTGCATAGGTGAGGAACCTATTGAGCTGCTGGCAG AACCTTGCGCCATCAATAGCTTTGATATTGATCGTCATAATCCATCGGTAAGTAGAGGCACTAATATCGTTACTATTATG CGGGAATAACTTGATGGTGTTTTACAAGTAACTCTTGTTTTTTAAAGCTTACCAAATGGTTTATTTATTAAAAATGAATA GAATGAAAATGGTAGAAGGGAAAAGTAGTGAAAATTTTGAAGGTGGGCAAGTTCCTTTCTGATGATTCAATCGATTGTCA TGCAGGATGTAATATGTAGTTTAGAGTGGGAAGCAGTAGCAATAGTGACAAGGTAA
CDS sequence (LotjaGi4g1v0291200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTAATGTATTCTCAGGCTGGTGGCTCCTTAGGCACTGTTTTTGCGTGGGATCTTAGGTGGCAACAACAACCGATTGT ACTTGCGGGATCAGCAGCAGGGGCTGGGGCTGTGGACACTACAGTGCAGTCAATATCTGAAAGTGAGGTTTGGGAGGTGC AGTATGATCGCTGCATTAAATCAAACGCTTCATCTACCCGGATCTTACCTGCCATGATCTGTTCAGAGGATGGAATTCTT GCTGTGGCTGAGCAAGGTGAGGAACCTATTGAGCTGCTGGCAGAACCTTGCGCCATCAATAGCTTTGATATTGATCGTCA TAATCCATCGGATGTAATATGTAGTTTAGAGTGGGAAGCAGTAGCAATAGTGACAAGGTAA
Protein sequence (LotjaGi4g1v0291200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVMYSQAGGSLGTVFAWDLRWQQQPIVLAGSAAGAGAVDTTVQSISESEVWEVQYDRCIKSNASSTRILPAMICSEDGIL AVAEQGEEPIELLAEPCAINSFDIDRHNPSDVICSLEWEAVAIVTR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 126 | 120 | 1.7E-37 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0291200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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