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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0292900 |
| Transcript ID | LotjaGi4g1v0292900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glycine-rich protein; TAIR: AT4G30460.1 glycine-rich protein; TrEMBL-Plants: tr|A0A151S9D4|A0A151S9D4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0292900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:66499754..66500645) extracted from Lotus japonicus Gifu genome v1.2.
TCTGAACATACCTCTCTACAAAACTTTCTAACCTTCAACATTAGCTCAAGCTTCATATATACACTTGTGTTGATCAATAA TTCAATATTAATCAGTATCATTAATGGCTGGTATGAGGGCATTAGCTCTTGTTGCTTTGCTTCTTGCAATTAATGTTATA GAATCTGAAAGCAGAGCCGCAAGAAAGGACCTTGGATTGGACCTTGGTGGGATAGGAGTTGGGATTGGTGCAGGATTAGG AATTGGGCTCGGTGGTGGAGGTGGTGCTGGCTCTGGTGCAGGTGCAGGCTCTGGCTCTGGCTCATCTTCAAGTTCTGGTT CTGCTTCTTCTTCAGGGTCAGGGTCTTCTGGAGGAGCAGGTTCTGAAGCTGGTTCTTATGCAGGATCCCATGCTGGGTCT AGAGCTGGGTCAGGGTCCTCTGGTGCAGGCTCTGAAGCTGGTTCTTCTGCAGGATCTCATGCTGGGTCAGGATCTGGTGG TAATGGAAACTGATTAAAATCATGCATAATGTAAGTTAACTATGGATAAATTAAGGTCATGTGGATCATAAGATGCCATT GATGTCAGTGCACTGATTAATAACATAAATTTTAATTAGCAAAGAAATAAATTTGTCTAGCTAGCTAGCTCCTTATGTTA TAAGTATATTGAGTACAGCAAGGAGTAATGCATGGTTCTCTCCTACTATCTTCAATATGTAGTGTCTACAAGTGTTATGT GCTTTTTATTTTTTTGTCAAAGAAGTGTGTTGGATGTTCAAAACTTGTAATTGACTAAGTGCATGTTGCTGTGTTACTGG TTTATCCAGCAACAGTACTTCAACAATATTAATTAATGTTTTGTATAATTGATTGCGCGATTCAATAAAATTAATGAGTG AAATTAAAATAA
CDS sequence (LotjaGi4g1v0292900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGGTATGAGGGCATTAGCTCTTGTTGCTTTGCTTCTTGCAATTAATGTTATAGAATCTGAAAGCAGAGCCGCAAG AAAGGACCTTGGATTGGACCTTGGTGGGATAGGAGTTGGGATTGGTGCAGGATTAGGAATTGGGCTCGGTGGTGGAGGTG GTGCTGGCTCTGGTGCAGGTGCAGGCTCTGGCTCTGGCTCATCTTCAAGTTCTGGTTCTGCTTCTTCTTCAGGGTCAGGG TCTTCTGGAGGAGCAGGTTCTGAAGCTGGTTCTTATGCAGGATCCCATGCTGGGTCTAGAGCTGGGTCAGGGTCCTCTGG TGCAGGCTCTGAAGCTGGTTCTTCTGCAGGATCTCATGCTGGGTCAGGATCTGGTGGTAATGGAAACTGA
Protein sequence (LotjaGi4g1v0292900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGMRALALVALLLAINVIESESRAARKDLGLDLGGIGVGIGAGLGIGLGGGGGAGSGAGAGSGSGSSSSSGSASSSGSG SSGGAGSEAGSYAGSHAGSRAGSGSSGAGSEAGSSAGSHAGSGSGGNGN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 21 | 21 | - | – | |
| SignalP_EUK | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 6 | 91 | 86 | 2.3E-17 | – | |
| PANTHER | 6 | 91 | 86 | 2.3E-17 | – | |
| Phobius | 6 | 16 | 11 | - | – | |
| Phobius | 17 | 21 | 5 | - | – | |
| Phobius | 22 | 129 | 108 | - | – | |
| MobiDBLite | 55 | 129 | 75 | - | – | |
| MobiDBLite | 61 | 88 | 28 | - | – | |
| PANTHER | 83 | 128 | 46 | 2.3E-17 | – | |
| PANTHER | 83 | 128 | 46 | 2.3E-17 | – | |
| MobiDBLite | 98 | 129 | 32 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0292900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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