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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0300000 |
| Transcript ID | LotjaGi4g1v0300000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT5G53670.1 transmembrane protein; Swiss-Prot: sp|C1FLB3|PYRF_CLOBJ Orotidine 5'-phosphate decarboxylase; TrEMBL-Plants: tr|A0A0J8BL66|A0A0J8BL66_BETVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0300000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:67413411..67419987) extracted from Lotus japonicus Gifu genome v1.2.
CTTTCTTTCTTTATTTAAGGTGAAAAAAGTGCAAAATGAAAATGCAAAAAAATATTTTTATTGCTAATGATTAGGCAGGT TAATTCTTTAACCATGTGACAATAATAAAAAGGCTTTGCCAAGCTTAAAAAAAATAAAAAGAGAGTGTGTTTCATTAGTG GGCCTTTAGCCTGTTTTCAACAAAAAAAAATCATGAAGAGGGGTAGTAAAAAGAAAATCAGCAATGGGATCCATGAACCT CCAACTTTAGGGTAAATGGTCCTCCTATAAATAAGAGGCCTTAACCTTTTCCCCAACTACCTAAGAAAAAATGCACTTAA CTTGATGCAAAATACGGTCTGATAAAAAGGAGCAGAGGAAAAGGAACTTGACTGAACAGCTTTTGGTGTTTGTGGCTTTT GTTGAGGTATTTTTTTTTTCATCACTCATCACTCTACTATGTCCTTGCTGTTCATGAGTTCTAAATAAATACGGCTTTTC TTTGCTGTTCATGTTCCATTACTTCCCTTTTTATTTACCACCCTTTTTCATTTTAGAATAATAGGCCAAAAAATGGAAAT AAGTTCATGTACAGAGAACAAAAACTAATAAACTCATCTCATGAAGATCCAAACCCAGAACATAAATCAACCCTTAAACC AACAAAGAAACAGTAAGGGTTCAAATAGCAGAAAGAAGATGGCGCCCTCGCCGGGTCACCGCTCCGATGGTGGCTCGGTG TCGTGGCAGTTCATTCTCAGGCTACCTTCACTAACCCTCACCAGAGCATCGCCGAAGGGTGGTGGTTTTGAGTGTCGTGG TTGTGTTGCTACCCCTTTCAACCTCTTTCCCTAACGATTCGCTTTGCCTCCATCAAAATCATCGCCGAAATACCGGATTC AAGTGTCAAAGTCGCAGAGCTGCTTCGCCCCCGCCAGACCGCCGTCGAAGGGCAGCGATTTGGTGTTGTGGCGTGGCATC CATCCGTTCCGACGAGCCCCCGCCGGGCCGTAGCCGCGGCTGCGGCCTTGGCGTTGTGGCGTCGTCGATCCGGCACTATC ACGGTTGCGCGCACAGAGATGAGGTCGCTAGATTTAAAAAAAAAAAAAAAAAAGGGGGAGAAAAAGCAGAACCAGAAGAA ACAGGAACGGTAGCATAGAAAGAGAGAGCGTGAGAAGAAAAAATGAAACTGATGGGAAAATGGGCTATGGTTTGTTTCTT TTTATGTTTTTACCTTATCTTTTCTCTTAAATTCTTTAACAAACTTATCTGATTGTTGTTATGGGCTTTAGCCCAGACCC GTTTTTTTCATTGTTTCTTGTTCCTTTTTCTTTTATTTATGAATCCTCTTCTTTTTGCATCCTAATTGGGCACAACGGCT GGTGTAATTTTTTGGCAAAAGAAGAATATATTTTGGATCTTAATCAATGCTAATACTTGTCCAAATCAAGAATACAAACT TGTTTAAATTTTACTATTATAGCTTCAACAATTTTAAAATATCTAAATTAACTTGTATCATATTAAATTAATCTCAATTA AAAGAGCAACATCATTGATTATACGATCTCGTCGTTCTCAAGTGTTGTATGACTCGACCTATCGTATACTAATGTATCTT GAGTCTAAAGCTAAATTATAAATATTTTCTTAATTCACAAGCTAATAAATAATATAAAAAAATTATTTCTGAAAATCCTA AAATAATTTCATAATCTCACATAATAAATTAGGGTGTTGTACTCATCGTATGCTTAGTCATCTTGAGTCCCACCCAATTA AAAAGGAACTCCAAACAACTTCTCTCTTATATCGTTAGAACTACGTAGCCTTGATGTCTCCTCACAGAGAATACGTAGGC CGGGATTTAATTCCCGACAGGCACCCTAAAATAAAAAATAAAAAACCATTAAGGTTCCTATGTAAATAGTTTTAATAAAA AGATAAAGTAATAGGAAATATGGTAAAACAAATACCTTTTAAAGCTAAGAAATCATGCATAATTAATCTTAGGTACCTCT AACGATGGGCGCTGTGGGGTGCTAACACCTTCCCCATGCGTAATAGACTCCCGAACTCAATATTTGGTTCGTAGACTATT ATTTTGGGTTTTCCGGTGTTCCCTTTAAAAACATTGGTGGCGACTCTTCTGTTTACCATTTAGCTTTTTAGCGCGCCTTC CCCGCCGCGACCCCGGTTGCGACAATGAGGTTAAGTGGTGAGTCTAATTGAGTGAGACTTCGACCTACAGGCAAGTTTTA TGTCACTAGATTCATAAATTAAGCATGATTTACATTGGTAAAACATGAATTTTATTCTGTCTCAAATTGCAGATAATGAG TATGTATATTTTTGAAATTGCAGTTCAACCTGCAAGTATCTCTGATATTAAGTGTTAAATTCTCGAGCTGAGGGGTGATA ATCATAAGGTATGGAATGAGAGAATTCTCCTTCATTTAGGCTGGATGGACATTGACTATGCTATAAGAAAAGCTGAGCCT GCGACTATTACTGAAACCAGCACTCCAGATGCAGTTGATCTTTATGAAAAGTGGGAGAGATCTAACTGTCTCTCAGTGTC GTTCATAAAGACTAGCATTTCTGCTGGTATCCGTGGTTCAGTTGATCACCTTACCAATGTCAAGGACCTTCTGAAAGCGA TTGATGAGCAATTTGCTACATCAGATAAGGCCCTTGCGAGCACCTTGATTATACAGTTCTCATCCATGAAGCTCACTGGG GTTAGAGGTGTGCGTGATCACATCATGCGCATGAGGGACATTGCGACTCAGCTGAAATCTTTGGAGGTAACCATGTCTGA CTCTTTCCTGGTTCACTATATTTTGTGCTCACTGCCACATCAATATGCTCCTTTCAAGATCTCTTACAACACACATAAGG ATAAATGGTCAATTAATGAATTATTGACTATGTGTGTTCAAGAGGAGGAGAGATTGATGCTGGAAGAGGGTGAGAAGGTG AACTTGACTGTTCAGGGAACGAATTAGAAGGATTATGCCAAGAATAAGGGCATCATTCCTCCTCAGGCTGACATTAAAAA GGAGTCAAAGTGCTTTTTCTGTAAGAAGAAAGGGCACATGAAGAAAGACTGCTTGAAGTTTAAGAGTTGGCTTGACAAGA AAGGTACCCCATTTACTTTTGTCTGTTATGAATCTAATATGGTTAGTGTTAATCAAAACACATGGTGGATTGATTCTGGT TCTACAATCCATGTTTCCAATACCTTGCAGGGTATGGAAAATCTAAGGAAGCCAGTGGGAAGTGAACAATACATCTATTC AGGAGGGAAGATAAGTTCACATGTGGAAGCCATTGGGACCTGCAGTTTAGTCTTAAGTAGCAGCTTTATTTTGCGTTTGG AAAAGACCTTTTATGTTCCTAGTTTTTCTAAGAATTTGATTTCAGTTTCGAAACTTGCCCCTTTGGGTTTTAATTTCAAT TTCTTAGATTCTGGTTTAACTTTGCTATATAATTCAGAAACTATTGGTTTTGCTTCATTAGTTGATGGTCTTTACCCGCT TAATTTGCAAAATGATGCTGCTTATAATTCTATGCATGTAACTGCTGGTTTAAAACGATGTGTTGTGAATGAGGAATCAT CTATGTTGTGGCATCGGAGATTGAGACACATCTCCATTGAAAGAATTAAGCGATTAGTGAATGAAGGAGTACTTAGTACT TTGGATTTTGTTGACTTTGAGACTTGTGTGAATTGTATTAAGGGTAAACAAACTAACAAGTCTAAAAAGGATGCCAAGAG GAGCTCAAACCTATTGGAAATCATACATACAGATATATGTTGTCCAGACATGGATGCAAGTAGTCTGAAATACTTTATCA CCTTCATAGATGATTATTCACGATATATGTATCTCTACTTACTTCGTTCTAAGGATAAAGCTTTAGATGCCTTTAAAATT TTTAAGGCTAAAGTAGAGAAACAATGTGGAAAAAAAAATTAAGATCGTGAGATCAGATCGGGGTGGGGAGTACTATGGTA GATACACAGAGAATGGACAAGCACCTGGTCCATTTGCGAAGTTTCTTCAAGAACATGGGATTGTTGCCCAATACACTATG CCTGGTACTCCAGAGCAGAATGGTGTAGCAGAAAGAAGAAACCGAACTTTAATGGATATGGTGAGAAGTATGAGGAGTAG TTCAAAACTTCCTCAATTCTTGTGGATTGAAGCATTAAAGACAGCAGTATATATATTAAACCGAGTTCCAACCAAGGATG TCTCAAAGACACCTTTTGAGTTATTCAAAGGTTGGAAACCGAGTTTGCGACATATACGCATTTGGGGATGCCTGTCTGAA GTGAGAGTTTATAACCCACAAGAGAAGAAGCTAGATCCGAGGACTATTAGTGGTTATTTCATTGGATATGCTAAAAAGTC CAAAGGGTATAGATTCTATTGTCCATCACATAGCACTAGAATTGTGGAATCAAGAAATGCAAAATTTCTTGAGAATGCCT TGATCAGTGGGAATGATCAATTTCAAGACATTGCTTCTGAAAAGGATCACATTGAGCATCAACCTTCTGGATCAAGTGAC AGATTGATTGTCATACACGCCCATCAAGCACAAATGGGTGTTAGACAACCAGTCATTGAAATTCCTCAAACACCTGCAAA TGACCTTGTAGATCAGATTATTGATGAAGGGCAACCAGATGATGTTGGACAACCTGTTGAACAAGTTGGACAGCCGGTTG AACAACAAGTTGCTCAAGAACATAATGAAGCAATATTAAGAAGATCTACTAGAGTCAAAAAGCCTGCAGTTCCTAGTGAT TATGTAGTGTCTTTACAAGAATCAGACTATAACATAGGAGCCGAAAATGACCTTGAGACGTTTTCACAAGCCATGAGTTT TAAGGAATCAAACTTATGGATTAATGCCATGAAAGATGAGATGGACTCTATGGCATCTAACAAAGTCTGGAATCTCGTTG AGTTGCCTAAGGGTGTAAAAGCCATTGGATGTAAATGGGTCTTCAAAACTAAGAAAGACTCTCAAGGCAACATTGAGAGA CATAAAGCAAGACTTGTGGCCAAAGGATTCACTCAAAGGGAAGGAATTGATTACACAGAGACTTTTTCTCCCTTATCTAA AAAGGATTCTCTTCGAATAGTTATGGCATTGGTAGCTCATTTTGACTTTGAGTTACATCAAATGGATGTGAAAACGGCTT TCCTCAATGGTGATCTAGAGGAAAAGGTTTATATGAAGCAACCTGAATGGTTATCCTCTAGTGAAGGTGAGCACTTAGTT TGCAAGCTTAATAAATCCATATATGGATTGAAACAAGCATCCCGCCAATGGTATTTTAAACTTCATGAGGTCATCACTTC ATTTGGTTTTGAAGAGAACATCATGGATCAATCTGTATACCAGAAGGTTAGTGGGAGTAAGATTTGTTTTCTTGTTTTAT ATGTGGATGATATCTTGCTTGCAGCTAATGATAAGGGTATGTTATATGAGGTGAAACAGTTCCTCTCGAAAAACTTTGAT ATGAAGGATATAGGAGATGCATCTTATGTCATTGGCATTAAGATCCATAGAGATAGATCTATAGGTATTTTGAGTTTATC TCAAGAGACCTATATCAACAAAGTTTTAGAGAGATTTAAAATGAAAGTATGTTCACCAAGCGTAGCTCCCATTGTGAAGG GTGACAAATTTACCTTGAGTAAGTGCCCCAAAAATGATTTTGAGAGGGAACACATGAAGAATGTCCCATATGCTTCAGCT GTTGGAAGTCTTATGTATGCTCAGGTTTGTACCAGACCTGGCATTGCATATGTTGTTGAAGTTTTGGGAAGATATCAGAG TAATCCAGGTATTGACCACTGGAGAGCTGCAAAGAAGGTTATGAGATACCTTCAAGGAACAAAGAACTTCATGCTCGTGA ACTGATGATCTGGAAGTAATTTGCTACTCCGATTCAGACTTTGCTGGTTGCATTGATACTAGAAAATCTACATCTGATTA TGTTTTTATGCTAGCTGGTGGAGCTGTATCTTGGAGAAGTGCAAAGCAAACTTTGGTTGCTACTTCTACTATGGAAGCCG AGTTCGTTTCTTGTTTTGAGGCTACCTCACATGGTGTGTGGTTGAAGAGTTTCATATCTGGGTTTAGAGTTGTGGACTCT ATTTCTAGGCCATTGAAGATGTACTGTGATAACTCAGCTGCAGTATTTATGGCTAAGAACAACAAGAGTGGAAGTCGGAG TAAGCACATCGACATTAAGTACTTAGCCATAAGAGAACGTGTTAAGGAAAAGAAAGTGGTCATTGAACATGTTAGCACTG AGTTGATGATTGCTAATCCTTTGACTAAAGGCATGCCACCAAAGAATTTTAAGGATCATGTAGTACGAATGAGACTTGGT TCCATGATGTGATTTTCATTGTAAGTACAATTTATTATTCACAATGAGACTCTTATTCAGTTTGATGTTTTCTCATATAT TTTGTGCACATAATTGTTTAATTTGAGAAATATTATATGTTTGGACCTAGAATAGACATATGGTTTATTCATTAAGTTAA GAGCATAAATTGAGAGA
CDS sequence (LotjaGi4g1v0300000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACATTGACTATGCTATAAGAAAAGCTGAGCCTGCGACTATTACTGAAACCAGCACTCCAGATGCAGTTGATCTTTA TGAAAAGTGGGAGAGATCTAACTGTCTCTCAGTGTCGTTCATAAAGACTAGCATTTCTGCTGGTATCCGTGGTTCAGTTG ATCACCTTACCAATGTCAAGGACCTTCTGAAAGCGATTGATGAGCAATTTGCTACATCAGATAAGGCCCTTGCGAGCACC TTGATTATACAGTTCTCATCCATGAAGCTCACTGGGGTTAGAGGTGTGCGTGATCACATCATGCGCATGAGGGACATTGC GACTCAGCTGAAATCTTTGGAGGTAACCATGTCTGACTCTTTCCTGGTTCACTATATTTTGTGCTCACTGCCACATCAAT ATGCTCCTTTCAAGATCTCTTACAACACACATAAGGATAAATGGTCAATTAATGAATTATTGACTATGTGTGTTCAAGAG GAGGAGAGATTGATGCTGGAAGAGGGTGAGAAGGTGAACTTGACTGTTCAGGGAACGAATTAG
Protein sequence (LotjaGi4g1v0300000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDIDYAIRKAEPATITETSTPDAVDLYEKWERSNCLSVSFIKTSISAGIRGSVDHLTNVKDLLKAIDEQFATSDKALAST LIIQFSSMKLTGVRGVRDHIMRMRDIATQLKSLEVTMSDSFLVHYILCSLPHQYAPFKISYNTHKDKWSINELLTMCVQE EERLMLEEGEKVNLTVQGTN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 177 | 176 | 5.0E-76 | – | |
| PANTHER | 2 | 177 | 176 | 5.0E-76 | – | |
| Pfam | 30 | 164 | 135 | 9.6E-21 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0300000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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