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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0302300 |
| Transcript ID | LotjaGi4g1v0302300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribulose bisphosphate carboxylase small chain; TAIR: AT5G38430.1 Ribulose bisphosphate carboxylase (small chain) family protein; Swiss-Prot: sp|Q02980|RBS_MALSP Ribulose bisphosphate carboxylase small chain, chloroplastic; TrEMBL-Plants: tr|A0A1B4XTS4|A0A1B4XTS4_LOTJA Ribulose bisphosphate carboxylase small chain; Found in the gene: LotjaGi4g1v0302300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:67720299..67726564) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCATAGGTATGGAATTAGAGCTCAACACAATGGGTAGTGCTTGGAGTTTCTTAGACATTGAACAATGGTCAAAGTTG ACTACAATATTTTTTGACGATAAACCTTGTTCATATAGGCAGAAGAAGCAGTATAAATGTATTAGAAATTCCAGAAATTG CACATGCACTCTGAGACATGTTCAAGAGAAACACAAGCAATTTCACTAGTAAAGAAGGCTGTTTGGGGTGACCAAACTTG TTTTCTGTGCTCCAGAAACGCCAAGAGAAAAAGGGGAGGAATCATCTGTATATTTTATTCAACCGATCAACTAGCTGTCA AAAACTCCTCAACTCAGCACCAGGAATTGGAGGCCCCCACGCCCCACCTACTCCATTAACAAAGTTGTGAAACTGTACCA TATTTCTTTTACTATTGATTAACCAAAGCTTTGTACTTGTGCTCACCGTCTACTCATACTACTTAAACATCAAGATCAAG CACTGATCTGGTTCATTCATAGTTCCATAGCCTACTTGAGTAAAATGTCTGCTGGAACTTTCACAGCTCTGGTTGCTGGG GCTGGCTTTGTTGGCTTGAAATCCAACTCGTCAAATCTTTACCCTGTTACAGGGTTCAATGAATGGAAAAGCAAGACTAC ATCCAATGGTTCTAAAACTCTCTGCATGAAGGTGAAGTAATTTTTTGCAATATCCACAATTGATAAGATCATGATTACAT TCATGCTGGTATTTTTCTTCTGTAATATTCTTTGATCTGTGATATGTTTAAACTTCCAAACAGACATGGAATCCCATCAA TAATAGGAAGTTTGAAACACTATCCTACCTCCCACCCCTTACAGATGAGTCCATTGCAAAGGAGGTTGACTACATGCTCA AAAAGGGATGGATCCCTTGCCTTGAATTTGATGAGGTTAGTTCAAGTTAAGCTAACTTTTGTTTCTATTGTGGAGTTTGC TTGTATTTTTAAAAATAATAAAATGGGTCACGCTGAATAGACATACACACGCGACTTGACACCTGCAATTTCGTAACGCC TTTTAAATTAATGGTGTTGATTATGTGTCCGGAAATATTTATGTTCAAAGATCATTTTCTGCCTGAGATACATGGAAACT AGCAATTCCCATGCCATCATGATCTAATAAATTGAACGCAATGTTTAGTTATTAGCTTTGCTATTTTGGTTTTTTTTTTC TCTTTCATTTATGGTTCGGTTTTGTAAGCATTTTGTGTACCTTAGTAACATGAAACTCTGTTTTGTTTGAAACATGAATG AAGTTGGGGCATATTCGTAGAGAAAATAGCAGGATGCCAGGGTACTATGATGGTAGGTATTGGACATTGTGGAAGCTACC CATGTTTGGTTGCAATGACTCATCTCAAGTTCTGAACGAGATCCAGGAATGCAAAAGGGCTTATCCAAATGCATATATAC GCTGCATTGCATTTGACAACCACCGCCACATGCAATCCATGGCTTTCATCATTCAGAAACCAGCAGCCAATACCACTACC ACTTGACTCGTTTTACTCTTGTTTCTCTACAAATCCTTGTTAAAATTCTCAATCTTTTCTTTTTTTCTGAAATATGTAGT GTGGTTCACAGTTTACGAATGAATAAGACGGTTTTGGAATATCACAGTGGTTTGATTGAGATGCTGATTCTAGGAAATAT TAGTGGATTAACATCGTCATATGATCTATATCTTATTAAATTGCAACTAGACACACACCTTTAACACTTTTACCATAAGT TTTTTTTTTGACAGAACCATAGTTTAATTTTAAAAAGGACTCTATTTGGTTTACCAAAACCATTATCAATGTCCAATGAA TGTAACATGTGAATTGGTCCCACAAACATAGTGGATTCCATGTACAAGGATTGAAGGATTAATAGTTTTTTTTGTTTTGG TCAGTGAAGGAATAATAGTTTAATACCGAAATTCTCAATGCAAAACCAGCCCATAGATTTTTTTTTCAGTAGCCCATAGA TATGTAATCCTTGTAGCAAAATTTAACCAGCCCAAAAGTTTCACCTTACATCCCCTGATTCCACCAATATGTGCATATTG TGTGTCAAGGTGTGTGCATGTATGATTTGCACATACAAACCATAATATTTGCAAAAGCTTTAGATTAGTGGGTTAACCTC TAGACCCCTAATTTCCTAAGAATGTGGTCCTTTATGGAGTCGTGTTCACAACAAGAAAATGAGTACATCACCGATAAACA ATCAATTTATTCCAAAAATAAAAAGTGCTTGGCATATTTTACAATTTTCGACTTCCCTCCAAGAATTAATTTGTTCAAAG AGCCAATGCTTGGCATACTAGAGTGGATGAAATTCTTGGGTTTTAGCACTTGCAGCTAATAAATCAGAATTAATAAGTAC ATCCATAATCAAAACTCTTGCATCATGGTATAAGGCTTGTTGCAATGCTGCTAATATCAGTTTGAGCAATTCTTAGGTGC ACAAGTTATGTAGTTAAATCCACATACTGCATGAAAAATCAGCATATTCTTTTAATGCTATTTGATAATTAGTTAAAAAT GTTGACAAGCCTAACAACACCAATTACACTGGACATTGAGGTGGATAGCACAGGGTATCAATGAGCAACACATAAAAACT AGTTCTTACAATTACAACCTTCCATTTTGGGTTGAACCAAGGGTTTCTCACTCCAAGATTCCATATGATTGAACAGCAAC CAACACCCATCTGCAATGAATAATGGCAATACATGATTAAGCAAAGGAAAATGCTTAATAGTACAAAAGACATTTCATGA AGCGCACAAGTATAAGGGAGAAGCCCACAGTGGAAGTGCATTTACGACTTTACGTTCCGTATAAAATTAAAAAAGATGGC CCCTGAACGTTCATAACAATCTCTTAGCAAATAATTAATGTAAAATTACACTAATCTGAAGCAACACAAGCAGCAACATA AACAGACAATCTGCAGACAACATAAAACAAGCTAAAAGACATGCAACCAACATTGTCGCCTTGTTAGGAAATCAAACTTA GCGTAATAAGTTCAAAAATTAGGAACACCAATTACCCAAATGAAGAATATAATAGAATGTTTTTATCTCAAGGGAAGAAA AAACAACACATATTGATACACAGTACACACTAATGTGGAGGGTTTCCTAAAATAAAGATTTCATAGCAGTAATATAGTAA ATAATCATTATCCTTATTGGTAACCATGTTATTTCAAAGTTACATTGAGCTTAGCTTATCCATTTTAAAAGTTAACACTA AGAAACAAAATAAATGCACTCCAGCTCTGAGCCCAATTATGTAAAATCTTTCTTATGCGCAAATTTTATAGTTACTATTA CTCTTACACTCTATCTGGCCTATCACAATTCACACATTATGTTCCCATAGTCCAACTACTTGTATTTTCTCTTCAGCCCA ACATTAAACAAAGCTTCAACAAACATTAAGTTTATTCCACAAAAGGGCTCTTTTGAATGCCCTAAGGTTCACAACACACA AGTTCTGTCCCACAATGCATGTGTATAATGGGGACAAGAAAGTTTTGGCCTTCCCCAAGTATCCTATGGTGTTTGCTTCC ATGGTAGTTAAAATCAAGATCAAACTCATGAGATCATATAAGTCTACAATTATTGCCACTCCAGATCACGCCTAAAATCA CGATTTGGTGAGATCTTGTAGGATTGCCGTGTTTAGGTGTAAAATTGGTGGAATCAGATGAACCCATTTTCCCGTTTTCA AGAGGAAAAATCAGAACAACAGCTCACTTGACTTTGAGCCCTGTTCTGTTTTCTACCATCATGAAATCACCTCTGTCATG TGATTCAACCGGTGGTTGGGTCCTATGGGTGGTTCAACTTTGCTGATGACTAGGTGAGGACTTGTGGCGGATGGATGATT CAATTTTATTTATTGCTGATGCCAGAGAGTTGTGGTTAGACACTTGTTGGGGCAGGCAACTAGGCAAGGTTTGTTGCTGG TTCGGCATGATTCTTCATGTTGTAATAAATTCTTCATTGCTATAACATGTCTTTAGTTTCTTGCTGGCTGGGTGGTTCAT TTGAACTGAATTTTGTTGGGTGTAGCAAACATCTGACGGTAAAGGTTGTAAAAAACCTTTTTTTGGCTGGTGAATCCCAC GAATACATCTGTAGATTTTTTTTTACAGGATCTTATGATCCATGAAACGACATGCATTTCACGATTTTACACTCCCCTCC CAGTACCCAATTCTAGTAGCTTTTCCATTTTGACTACCATACTCGCTTCCACACTAAATGAATTAGCAGCATAAAGAGCT TTGAATATAAAACTACAAAAAGAATCTGGTTTCTACAAGAATGAAAATAAAAGGAGGTCTTATGAGCTTCATCATCACCA CTAATGTGAACCGGAACATGAAGAATAAAATTAGGGTGGTAATGAATTTGTTATCCCCTCACCTCTCGTATCAAAATATT CCCTTTGCAAGGAACTAAACTATCATCCAGCTTAACGTCTAAAAACTAATCCGTCCCTGAGTGTTTCACGTGAATTTTAA AGGAAATAGAAGACAAGCTGTGAATTTAACACAAAACTAGGGATATTTACCTCCCATAAAAACTTTTCATTCACAATCAA TACAAAATCCACCATCATGATATTACTTACATGGTAAAACTGCAAACGCCTAAAATGTGTTGTATTTGCAGAAACATTCA AATAACTACACATATTAAGCATAAATATATTGTATTACTACTCGATACCCTCACAAATCTTTCTCTGAACACATAAACCT AACCTATATGTTGAAATCTAAATTAACCTCATTTAACCAGGTCTGCATGAACTTTCAATATAGAGGGGAGGATATTGAGT TTGTGTAACAAGAGTAAAATGCAGGTGACAATTACTCCAAGGTGTAAGCTTGATTGGAGGATAACAAGTCCTTAATTAAG GGAGTAGAATTCTACTGATTCATGTGTTTGTTCGTATAGGAAAAAAGGGGTAACTTATCATGGACCTTGACACTCCAGTT TGGGATTAATCACAACAATAGTCAGGTAGGTGCAGGGTTACAGAGGAGATAAAAAACAAAGCGATGAAACACAATGACTG GAGAAGGAATGGACAATGGAAGAAGAAGAATGACGACAATCCCATCGTCAACAGTCTAATTAACTGAAACAATAACCATA AAGAGTGGCTGAGTGAATTAAAAAACTTCAAAACATTGTTGGCACTTATCTCCCACGAATGGTTGCAGAGAAAGCACTAA TAGCATCGCAAGAGAGTAGTTAACAGCAAAAATATTGAGTTCATCTCATGCTAAGCATGAATTCCAAACTACATCATACA ATACCTGACAATAATACCACATACTAAAAACATAAGAACATAGCTATCAGCACAAACCCACAAGGTTACTGCATCAGTTA TCACTCAATTGAAAACATTCACTTAATGGCTATCATTAGGAAGAAGCAGATAAGATAATTGATTTTTTCAATCATGTGCT GAAGTAAACTAAACCCTAACCTAATTGCAAGAAAAACCCTAATGTTATCATAATTTGGGAGAAAGGGAAGGAAAAGGAAC ACACCTAAGGGCGATTCTTCTCAGCAGGCAAAGGGCGATTGAATCCGCCACGACGGTTCATGTACTGTCTCGGTTGGCGT TTGGTGACGGCTCTGACGCCGCTGACGTCAGCACCGGGGACGGGTTTTCCCTTAGTGGAGTCAAAACCAGTAGGAATCCC TAGCATCTTCATCATCTCAGCCTCATCTTCATTAACCTCAACCTCTCCTTCTCCTCCTCCTCCATTCTCTTTGTGCTTCT GCTGCTGCTCCTTCACTATCCCGTCGACGAAGTCCGACACCACTTTCTTCGTGTCCTTGTGGTCGTCCTCCACGGAATCT CGCCGGTGACGCTTCCTGGGTTGGTCAGGGGAAGGCGTCCGGTGGTGACGGCGGCGGTGGGAGCGCTCGGAAGGAGAGCG AGAGCGCGCGTGGCGGGAGCGGCCATGGTCGATTGAACGCGAACGCGAACGGGATCTCTTGCTCCGTGTTCGGTCACGGT CACGGTCTCTGTCACCACGGTCGCGCTCCTCCTTCTCGCGTCTTCGTTCTCTGTCTCTGTCGCGGTCTCGATCGGTCATG GCGAAGCTTTTTGGTGCTGCATTTGGGGGTTAGAGTGAATAGTATGTGGGTTTAGGTCAAGTTTGATGTAACTCCTAGTT TTAAATTTTTTGCATCAACATTCAAG
CDS sequence (LotjaGi4g1v0302300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGCTGGAACTTTCACAGCTCTGGTTGCTGGGGCTGGCTTTGTTGGCTTGAAATCCAACTCGTCAAATCTTTACCC TGTTACAGGGTTCAATGAATGGAAAAGCAAGACTACATCCAATGGTTCTAAAACTCTCTGCATGAAGACATGGAATCCCA TCAATAATAGGAAGTTTGAAACACTATCCTACCTCCCACCCCTTACAGATGAGTCCATTGCAAAGGAGGTTGACTACATG CTCAAAAAGGGATGGATCCCTTGCCTTGAATTTGATGAGTTGGGGCATATTCGTAGAGAAAATAGCAGGATGCCAGGGTA CTATGATGGTAGGTATTGGACATTGTGGAAGCTACCCATGTTTGGTTGCAATGACTCATCTCAAGTTCTGAACGAGATCC AGGAATGCAAAAGGGCTTATCCAAATGCATATATACGCTGCATTGCATTTGACAACCACCGCCACATGCAATCCATGGCT TTCATCATTCAGAAACCAGCAGCCAATACCACTACCACTTGA
Protein sequence (LotjaGi4g1v0302300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSAGTFTALVAGAGFVGLKSNSSNLYPVTGFNEWKSKTTSNGSKTLCMKTWNPINNRKFETLSYLPPLTDESIAKEVDYM LKKGWIPCLEFDELGHIRRENSRMPGYYDGRYWTLWKLPMFGCNDSSQVLNEIQECKRAYPNAYIRCIAFDNHRHMQSMA FIIQKPAANTTTT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 170 | 170 | 4.3E-78 | – | |
| PANTHER | 1 | 170 | 170 | 4.3E-78 | – | |
| PRINTS | 8 | 25 | 18 | 7.5E-50 | ||
| PRINTS | 36 | 54 | 19 | 7.5E-50 | ||
| SUPERFAMILY | 48 | 167 | 120 | 3.79E-53 | ||
| Gene3D | 48 | 173 | 126 | 4.2E-61 | ||
| PRINTS | 57 | 83 | 27 | 7.5E-50 | ||
| CDD | 57 | 166 | 110 | 5.67723E-61 | – | |
| SMART | 58 | 166 | 109 | 1.1E-37 | ||
| Pfam | 59 | 166 | 108 | 1.2E-40 | ||
| PRINTS | 85 | 100 | 16 | 7.5E-50 | ||
| PRINTS | 106 | 135 | 30 | 7.5E-50 | ||
| PRINTS | 140 | 166 | 27 | 7.5E-50 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0302300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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