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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0303100 |
| Transcript ID | LotjaGi4g1v0303100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | tRNA-specific 2-thiouridylase MnmA; TAIR: AT5G57345.1 transmembrane protein; Swiss-Prot: sp|Q9SRR2|FH10_ARATH Formin-like protein 10; TrEMBL-Plants: tr|I3SQL5|I3SQL5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0303100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:67825388..67828487) extracted from Lotus japonicus Gifu genome v1.2.
CTCGTGGCAAGTTGACAACCAGAGAAAAAAGGGTGAACATTCTTAAAATTCTGGAAGATACCTGGATTTGGTTCGTTTAT TCTTCGTTAAATAATTAGTCATCTGAAACAACAACAACAACAACAATCTTCTAAAACTCATCTAAATTCGAAGTACCATC ATCTGAAAGCAAAACCATTTTTCTTGCCTTAGTAGTTAAAAATGTGCAACACAGGCGTAGGTATAAGCATTGCCTCCTCA CATCAAAGCTTCCTTACAAACACCCTTACTCCATTAACAACCTCAAATTTCAGAACCCTTCATCCTTCTAGTACTTCACT TAAAACCATCTATTGCAGCAGTTCCCAACAAAAGTCTCCAACTCCTCCAAGGTATGTTGTATCACTCTATTTCAGCTAGT TTCAACCAATATTTGGTATTTTATATATGTTTACTAGTTTCATTCATGTTTTGCTCGGATTAATTTGACCCTAGCTATTG GAAAATCAGCAAATTAATTCATGGTTGTTGTGTTGTGTTGGCAGTAAAAATGAAAACAAGTTAGCAAAGTTGGCAATAGC TGCACTGGCTGCCGGGGTGTTAACACTGGGCTCAGTTCATGATGCATCAGCTGCCAAATCTGGTGGTAGAATTGGAGGTC AGTCCTTCAAGTCATCCGCGCCTCGCTCCGCACCAAGAATCAACAACAATTCCAGGTATAAATTTCTGGGAGGGAGGAAT TGACTATAGCTAATCAACTTTACTGATACTCATCTTTATGTTGAGTGTGAATCGTTTGAATGAAGGTCATATATCTTTCA GTATAGTGGATAGACTGAATATTATGTTGGTTTCTCACCATTTTATGATTTTGACACCTCCACTCCAATTTTGATAACAG TTAAGTGAAACTAGATCATATGTTGCTCTTCCAAATTTGGTTTCTGTAGAATTAAAATGCTACATTTCTCTTATAGACAC ACATATCAGTTTGCTCCCAATATGTGCTAATACTAGTCAGTAATCAATCAATAAAGTGAAATTTCTGATTAAGTCTAACT AAACTTCCTGGGAGGTTCTTCTCATATACGAGGAAGTGATTCAGTTCCAGGGCCAAAGGTTGTAGTTCTCAAATGAGCAA TTGAAAGAGTTGGGAACATCCTCTGGTTAAGCCGTTAGTTATTCCTTTAATATGATTAGATTTATAATTGTAAACACGGA ATCCCTTAGGATGTATTTGTTAGTCGAGTTTTGGACGGGAGGGAAGGGATGAGAAGGGGAAGGCTTATGAGAAGCCCTCC CCTTGTTTGGGAGATTTTAGAAAGGGGAGGAGGGGTTTGGAGTATTTCTTACCCCCCAAGACTCCTCCATACCCCTTGTT TAGTATATTAATTAGTTCCTCCAAATTGGAGGGTTTTGGGGAATTTCGAACTTCACATCAAGGGAAGAGATTATTACAAA TTGTCCCCCATCCCCCCTCTTGCCCTCCCCTAAACACACACTTAAGGACCCAAACCTTCATTTCACCTATTCATTTCTTT AAGGGGTAGTTTCCTATCATACGTCATTAGGTCTTCCATCTTGCAAATAAAATGTCTAGCCATAATCTTTGAAAGGATAC CTTCTATTTCCATTTCTCCGGCCACTTTATAACCTACTTTGATTTCTCAGTTTTGTGAAATTTATGTATGAATTGTTTTA GGATTATAACAAGAGCCACCCTCTTTTGCAGTTCCATCTCTCATCAATAACTCGGCCCCTACCACAATACCACCTATAGG TAGTTGTAGACAAGTTTCCTTTGAAGGGGAAACTTGAATCCCAAATATAGCTCGTAATAATCTATCTTCTAGAGGCATAT GAGGATCCTTTCCCTTGCCTAGTAAAGTATGTATGTAACTAGTATAAGTAGCTAGTGGCATAGGTTGGTCTGGTTGAGTT GTGTCTATGTATTGATTAGTCATGTATAAGTAAATTGTTATTCTCTCTTTTCGTATAGTGTTTTACCTCTAACAGATTTT CATTTAAAGGTTTCCATATAAAAACATAAAGAGTTGCATTGTGTTCATAATAGGTAGGTCTTTTCTATTTTATTGCAGTT GGAATATATTACTCATATCCTAGATTATTATCATTAGACATTGTATTGAAAGGAAAGAAATGTGTTTTATGCTTGGATAG AACTTTTGCTCTGGAACAACATATTGTTATCATTCATATAACCAAAGGATCGTGTAATGTTTCCCCTGTCCACCATGGGA ATATTGTTTCTGAAGTTTATGTCAATCGACAGGACCAATACATATGTCAATCCTCGAGTGGCACCTCCCCTAGTCGGTGG ATATGGCTATGGTTATGGTGTGCCTTCGTATGGTGGCTGGGGATGGTCTCCATTTTCTTTCTTTGCACCCGGTCCCAGTG TAGCTGTAGGCGTTGGAGGTGGATTTGATACTATAGTTCTGTTTATGCTACTTGGTGCTGGTGCTGCAGTTGTGAGGAGA TTCTTCAGGTCAAAAAATGATGATGATGATGATGACTACTAGCAGTACAGGAAGGTTTTAAATACTTGTATAGAGAGTAT TAAATACATGTTTAAAGGAATTGTAGTGTGACCATGGTGACCAAGTATTTGATCTATTTTGAGATACTATAATTGAAACA GAAGCAATCTTGTTTCTAATGTAGAAATCATCTCTCCAACCCCATGACTCTCAAAGCATGAGAATTGCCTGTACTGACTA CTACAATGAAATGGTGCCTTATGCTGCTATACATTTCAGTACCCAAAAAAAACAGTGCTGCTATACATTTAGTTTTCATT TTCATCATTAGACACATTTGCACTATCTTGTTATCATGTTGAACAAAATTTGCATATCTTCCACCAAATAAATCAAATGT TATTTTCTCAACATCCATGGAGACATTAAAGTCCAATAAACAATGTGTATCCACTTTCAAGTTGAAGATTAAGAAGAGTG TTGAGAGTCAAGACCATGAAAGTTTTTTTTTTGGACAAGACTTTCTAAAAATTGAAGTTAGTTTATTGTCGGAATCTAAC AGCTTGCTGCAGGGCTTTATTTTCTTTTTCCTGTTTTTCAGCTGCCGATTGTTGTATCCC
CDS sequence (LotjaGi4g1v0303100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGCAACACAGGCGTAGGTATAAGCATTGCCTCCTCACATCAAAGCTTCCTTACAAACACCCTTACTCCATTAACAAC CTCAAATTTCAGAACCCTTCATCCTTCTAGTACTTCACTTAAAACCATCTATTGCAGCAGTTCCCAACAAAAGTCTCCAA CTCCTCCAAGTAAAAATGAAAACAAGTTAGCAAAGTTGGCAATAGCTGCACTGGCTGCCGGGGTGTTAACACTGGGCTCA GTTCATGATGCATCAGCTGCCAAATCTGGTGGTAGAATTGGAGGTCAGTCCTTCAAGTCATCCGCGCCTCGCTCCGCACC AAGAATCAACAACAATTCCAGGACCAATACATATGTCAATCCTCGAGTGGCACCTCCCCTAGTCGGTGGATATGGCTATG GTTATGGTGTGCCTTCGTATGGTGGCTGGGGATGGTCTCCATTTTCTTTCTTTGCACCCGGTCCCAGTGTAGCTGTAGGC GTTGGAGGTGGATTTGATACTATAGTTCTGTTTATGCTACTTGGTGCTGGTGCTGCAGTTGTGAGGAGATTCTTCAGGTC AAAAAATGATGATGATGATGATGACTACTAG
Protein sequence (LotjaGi4g1v0303100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCNTGVGISIASSHQSFLTNTLTPLTTSNFRTLHPSSTSLKTIYCSSSQQKSPTPPSKNENKLAKLAIAALAAGVLTLGS VHDASAAKSGGRIGGQSFKSSAPRSAPRINNNSRTNTYVNPRVAPPLVGGYGYGYGVPSYGGWGWSPFSFFAPGPSVAVG VGGGFDTIVLFMLLGAGAAVVRRFFRSKNDDDDDDY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 62 | 62 | - | – | |
| PANTHER | 9 | 196 | 188 | 3.6E-81 | – | |
| Phobius | 63 | 81 | 19 | - | – | |
| Phobius | 82 | 156 | 75 | - | – | |
| MobiDBLite | 87 | 117 | 31 | - | – | |
| MobiDBLite | 94 | 117 | 24 | - | – | |
| TMHMM | 118 | 137 | 20 | - | – | |
| Phobius | 157 | 181 | 25 | - | – | |
| TMHMM | 157 | 179 | 23 | - | – | |
| Phobius | 182 | 196 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0303100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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