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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0307400 |
| Transcript ID | LotjaGi4g1v0307400.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nucleotide-sugar transporter family protein; TAIR: AT5G57100.1 Nucleotide/sugar transporter family protein; Swiss-Prot: sp|Q8RXL8|Y1689_ARATH Uncharacterized membrane protein At1g06890; TrEMBL-Plants: tr|I1MSJ6|I1MSJ6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0307400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:68316140..68320063) extracted from Lotus japonicus Gifu genome v1.2.
ATATTGACGTTTTTCTATAGTGAATAGACTATATTTCTATAAGAAAAATTCACTAATATCTTCCATTACCTTTCACTGCA CAGGAAAAGCATTGGAAGACTTGAGAGGCTCTCTGTTCAATGAATTTCGTACCGTTGAAGGTGCAAAACGTCAACAACAG CGTACGTGTGGTCCAGCTGCAGCACTTTCCTTCAATTTTCTGGTTGCAGTTGGTATTATTTTCATGAACAAAATGGTTCG TTCACTCTCTTTCTTTCTATCTGGTGTAGCTATGTTTTGTGTTGAAATTTCAAAGTACTATGGTTTTTATGCAGATTTAA TTGACTTCATCTTTTTCGTTGTTTCTTTCAGGTGCTTCAAACTGTCAAATTCAAATTCCCGATATTTCTCTCACTAATTC ACTATGTTGTGAGCTGGTTCTTAATGGCTCTACTAAATGCATTTTCTTTCCTCCCTGCATCTCCTTCCTCAAAAACTCCG CTGTCTGCTTTATTTACTCTTGGATTTGTTATGTCTCTATCTACTGGCCTTGCTAATGTCAGCTTGAAGTATAATAGGTA GGTAATTCAACTATCAATATTTTTATTTTGAAGTATTCTTTTAATACTCTTAATTCAATATTAATTCAATATCTATATCT GCAGCATTGGTTTCTATCAGATGGCAAAGATTGCAGTAACACCTTCAATAGTTATGGCAGAATTTGTTTTGTACCGGAAG AAAGTTTCTTGGCCGAAGGTAAATGCATTCACTTTGACTGTCTCGCAAACCCTCAGAAGAAAATTGAAAAATTGATTGAA ATAAATGAAGAAAAGAAGAATTTTATTGAATGATAGAGAATAGGAGAAGTGTCTACTCCTAGGGTTTCCCCTTCAACAAA GGATTTACCCTTTCATTTGAACTTTCCAAATTCACACAATGAGTCCTCTCTACTATGTGTCCTTATTTACCTAGTTAAGT CTCCTCTAACTGAATAACTACCCTAACTAATCCTTATTACTACTCCTCTTTACATAAGGGGTTTTAGAATGAGCTAATCT GAAAAACGTGCACATTTTGTTCTATCATCTATGAACTCCTGTGAGCATACATTGTTTTGACCTCAAACAGTATGCATGGA ATAATTAATCCCAGATTTGTATTATGAGGTTAAGTGCATGACCAAATTATGAAGTAAGCATGTCTCTTGAACACCCTCGT GAGTCAAGATACCTCAATTACTCCTTTATGTTTGCGGAAGCTCACTGAATGCCTTGGTAGACTTAAAGTGATTAGACCAA TAAATTAGTTCAAACTCAAAATTCTAGTTAACCAAAAGGCTCTAGTCACTTTGTGTCTAGGACTATAATTTTAGTATTTA ACTATTTATGATTGTGTATTAATTTAGTGATTTATGCCAGTCAAATATCATTGTTTGAATTAGTCAGCCTTCTTTCTCTG GACACAATGAGTTGTGTGTTCTGTATTTCATATATGAATTTCAGTTATTTTCTGTAGGAATTTCTAAAATTGTTCATAAG AGATGGATTTCAGTCAGTTAATATAGCTATGGATATGTTATCTTAAAAACATCAATTAATAAAGTCCCAACTTTTAGAGC ATTATAGATATGCTTATCCAATTTTAGATTGAAATGCTTACTATAGGAATGGCAACTCTACAGGCTATTGCATTAACGGT CGTATCTATTGGTGTTGCTGTGGCTACAGTGACTGACCTGCAGTTCCATGTGTTTGGTGCCTTTGTAGCACTGGCGTGGA TTGTACCTAGTGCTGCTAACAAAATCCTCTGGTCCCGACTGCAGCAGCAAGAGAACTGGACAGCTTTGGCGTAAGTAATT CATTCATTTATTCTTTAGGCCAGTTTAGGGTTAAAGGAGGAAGATTGTGTGTTAGTCTATGGCAACAGACATAAAACTAG CCTTATTTTTAATATGGATCAAGTGATCCATATAGCCGAACTGACTTAGTGAGATAAAAGTTGTTATTGTTTATAATACT GTTAACCCTGGCCTCCCCTCTCAATTTTCAGCGGTGATTCGCATACAAAGTTGCTTTCTCTTTCTTGCCTAATTTTTTGA TTGATCAACAGGTTGATGTGGAAAACAACACCTATTACTTTAATTTTCCTGGTTGCTATGTTACCCTACTTAGACCCTCC AGGTGTACTATCCTTTGATTGGAACTTCAACAACACACTGGTGATTCTTATATCTGCTATTCTTGGATTTTTGCTTCAAT GGTCTGGTGCTTTAGCACTGGGGTGAGTTACATGCATTATTCTTCTTTTAATTATTGAATGATTTTTCTGTAAAAATAAT TCCAATTTCAGTTTCTGGTAGAATGGTGTAGGAACCACTTGTTTAATATTTCTAGGTTGTTTTAAACACATAATCAAATT TAGTGTTGATTCAACGATGGCTTGACTTCCAATGTGCCAAACATGAACGAGGTCACTTGTTTTTTTTCCCGCTTGCTTTA TGATAGTACTTAATGACGAGTGCGAAAAATGTAAGTCACATTTTCTGCTTCCTTAATGGTGAATCAGTGGTTCACTGTTG AAGAGGAATATGCTTTATTTCAGTTGACAAAGGTGGACCGAGAAGCCTGTGGCCGCATTTGATTCCATCTTTGTTTCTTT TGTTCTCATAGTTCCTGATCTTTTATTATTTTAGTTTTTCTCTATTTTTCCAAATTTTTTGTTGTTTTAGAAATCTAAGA CCATTTATCACTTTTTATTTCAATGATAGTGTATACCCTCATTTACTAGTTTAAGAAATTTATTGAAATTAGTTGAAAAT AGGTTATAAGTAAGCATAAGCTCTTCTCCATAAGCTATTCTGACCAACTTATGAAAATTAGCTCAAACCATCTTATAGGT AGGCCATAAGCTATCCCAAACACTTGCATAAGCGCTAATACTATCATTCTCTTTTTAACATATTTCACTTAAATAAGTGT GTTTTAGTCAAGTTCATATCAATTAAAAAGCTCTTAAACTATGTGCATGACCTCAAACAACAAAAGATGAGGAATGGAGG TAGTAGCATTTCAATTTCAAGGAGGGTCCAGATCACTCTTATTATGAATTATGGGCTACTTATATGCTTTGTTTTAAACA ATTACATATGTTTTTTTGCGCCTTTGGCTTATTTATCCGTATTCCTGTAAAGACTTGATAAATTCAGATTTGGCTAGATA TTTTTGTAGAAGTCACATATTATTCTAATTTCCTTCCAACATCAATGATATCCATGAACTTCAAAATTCTGAAGTTGTAT TTTTTAGTGACAAACCACCCAACTAACCAATCCTCTTAAAAAATACTAAAAGAGTGATCCTCCTTGTATGAGAATTTCGA AAACAGTTTGTATATATTGCATAGTGTAATGGTTATGTGCTAATACTGATGGTGCTCTCTATGTCCAGACTTCAGACGCA CTAGTGAATAAGTGTGACATGTTTGTGACATTAATGACAGATCTTTTAAAGACTGTTCTAACATATTGTTTGCCAATGCC AGATATTCACTGATGTTCATTAATTGTTTTTTTTTCGTTGCTGTTTCTATATTACTGTTTTAAACATGCAGTATAATGCA TTGTTTCTACCTGGTTTCTTCTTATATTTTCTTGGTCATGAAATTTACAGTGCTACGTCCGCCATCTCGCATGCTGTTCT TGGGCAATTTAAGACGTGTGTACTCCTCCTGGGAAACTATTATCTTTTTGGGTCGAATCCCGGCATAATCAGTATCTGTG GAGCAGTTACAGCCATTACCGGCATGTCTGTTTATACTTGTCTTAATCTGAAGCAGCAATCAAACAAGATATTTCCTCAA CAGGTCTCCCATGTAGCAAAATCTAAACTTAGCAAAGAAAATGGCAGTTCCCAAAATGGACATTACGGTGCAGAATCCGT CTAA
CDS sequence (LotjaGi4g1v0307400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACAAAATGGTGCTTCAAACTGTCAAATTCAAATTCCCGATATTTCTCTCACTAATTCACTATGTTGTGAGCTGGTT CTTAATGGCTCTACTAAATGCATTTTCTTTCCTCCCTGCATCTCCTTCCTCAAAAACTCCGCTGTCTGCTTTATTTACTC TTGGATTTGTTATGTCTCTATCTACTGGCCTTGCTAATGTCAGCTTGAAGTATAATAGCATTGGTTTCTATCAGATGGCA AAGATTGCAGTAACACCTTCAATAGTTATGGCAGAATTTGTTTTGTACCGGAAGAAAGTTTCTTGGCCGAAGGCTATTGC ATTAACGGTCGTATCTATTGGTGTTGCTGTGGCTACAGTGACTGACCTGCAGTTCCATGTGTTTGGTGCCTTTGTAGCAC TGGCGTGGATTGTACCTAGTGCTGCTAACAAAATCCTCTGGTCCCGACTGCAGCAGCAAGAGAACTGGACAGCTTTGGCG TTGATGTGGAAAACAACACCTATTACTTTAATTTTCCTGGTTGCTATGTTACCCTACTTAGACCCTCCAGGTGTACTATC CTTTGATTGGAACTTCAACAACACACTGGTGATTCTTATATCTGCTATTCTTGGATTTTTGCTTCAATGGTCTGGTGCTT TAGCACTGGGTGCTACGTCCGCCATCTCGCATGCTGTTCTTGGGCAATTTAAGACGTGTGTACTCCTCCTGGGAAACTAT TATCTTTTTGGGTCGAATCCCGGCATAATCAGTATCTGTGGAGCAGTTACAGCCATTACCGGCATGTCTGTTTATACTTG TCTTAATCTGAAGCAGCAATCAAACAAGATATTTCCTCAACAGGTCTCCCATGTAGCAAAATCTAAACTTAGCAAAGAAA ATGGCAGTTCCCAAAATGGACATTACGGTGCAGAATCCGTCTAA
Protein sequence (LotjaGi4g1v0307400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNKMVLQTVKFKFPIFLSLIHYVVSWFLMALLNAFSFLPASPSSKTPLSALFTLGFVMSLSTGLANVSLKYNSIGFYQMA KIAVTPSIVMAEFVLYRKKVSWPKAIALTVVSIGVAVATVTDLQFHVFGAFVALAWIVPSAANKILWSRLQQQENWTALA LMWKTTPITLIFLVAMLPYLDPPGVLSFDWNFNNTLVILISAILGFLLQWSGALALGATSAISHAVLGQFKTCVLLLGNY YLFGSNPGIISICGAVTAITGMSVYTCLNLKQQSNKIFPQQVSHVAKSKLSKENGSSQNGHYGAESV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 1 | 265 | 265 | 1.3E-15 | ||
| Phobius | 1 | 14 | 14 | - | – | |
| PANTHER | 1 | 297 | 297 | 1.5E-167 | – | |
| PANTHER | 1 | 297 | 297 | 1.5E-167 | – | |
| TMHMM | 13 | 35 | 23 | - | – | |
| Phobius | 15 | 38 | 24 | - | – | |
| Phobius | 39 | 49 | 11 | - | – | |
| Phobius | 50 | 69 | 20 | - | – | |
| TMHMM | 50 | 69 | 20 | - | – | |
| Phobius | 70 | 74 | 5 | - | – | |
| Phobius | 75 | 95 | 21 | - | – | |
| Phobius | 96 | 101 | 6 | - | – | |
| TMHMM | 100 | 120 | 21 | - | – | |
| Phobius | 102 | 121 | 20 | - | – | |
| Phobius | 122 | 126 | 5 | - | – | |
| TMHMM | 125 | 147 | 23 | - | – | |
| Phobius | 127 | 147 | 21 | - | – | |
| Phobius | 148 | 158 | 11 | - | – | |
| TMHMM | 159 | 181 | 23 | - | – | |
| Phobius | 159 | 180 | 22 | - | – | |
| Phobius | 181 | 191 | 11 | - | – | |
| Phobius | 192 | 210 | 19 | - | – | |
| TMHMM | 196 | 218 | 23 | - | – | |
| Phobius | 211 | 221 | 11 | - | – | |
| Phobius | 222 | 243 | 22 | - | – | |
| TMHMM | 225 | 244 | 20 | - | – | |
| Phobius | 244 | 248 | 5 | - | – | |
| TMHMM | 248 | 270 | 23 | - | – | |
| Phobius | 249 | 268 | 20 | - | – | |
| Phobius | 269 | 307 | 39 | - | – | |
| MobiDBLite | 288 | 307 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0307400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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