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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0307400 |
| Transcript ID | LotjaGi4g1v0307400.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nucleotide-sugar transporter family protein; TAIR: AT5G57100.1 Nucleotide/sugar transporter family protein; Swiss-Prot: sp|Q8RXL8|Y1689_ARATH Uncharacterized membrane protein At1g06890; TrEMBL-Plants: tr|I1MSJ6|I1MSJ6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0307400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:68316147..68320063) extracted from Lotus japonicus Gifu genome v1.2.
CGTTTTTCTATAGTGAATAGACTATATTTCTATAAGAAAAATTCACTAATATCTTCCATTACCTTTCACTGCACAGGAAA AGCATTGGAAGACTTGAGAGGCTCTCTGTTCAATGAATTTCGTACCGTTGAAGGTGCAAAACGTCAACAACAGCGTACGT GTGGTCCAGCTGCAGCACTTTCCTTCAATTTTCTGGTTGCAGTTGGTATTATTTTCATGAACAAAATGGTTCGTTCACTC TCTTTCTTTCTATCTGGTGTAGCTATGTTTTGTGTTGAAATTTCAAAGTACTATGGTTTTTATGCAGATTTAATTGACTT CATCTTTTTCGTTGTTTCTTTCAGGTGCTTCAAACTGTCAAATTCAAATTCCCGATATTTCTCTCACTAATTCACTATGT TGTGAGCTGGTTCTTAATGGCTCTACTAAATGCATTTTCTTTCCTCCCTGCATCTCCTTCCTCAAAAACTCCGCTGTCTG CTTTATTTACTCTTGGATTTGTTATGTCTCTATCTACTGGCCTTGCTAATGTCAGCTTGAAGTATAATAGGTAGGTAATT CAACTATCAATATTTTTATTTTGAAGTATTCTTTTAATACTCTTAATTCAATATTAATTCAATATCTATATCTGCAGCAT TGGTTTCTATCAGATGGCAAAGATTGCAGTAACACCTTCAATAGTTATGGCAGAATTTGTTTTGTACCGGAAGAAAGTTT CTTGGCCGAAGGTAAATGCATTCACTTTGACTGTCTCGCAAACCCTCAGAAGAAAATTGAAAAATTGATTGAAATAAATG AAGAAAAGAAGAATTTTATTGAATGATAGAGAATAGGAGAAGTGTCTACTCCTAGGGTTTCCCCTTCAACAAAGGATTTA CCCTTTCATTTGAACTTTCCAAATTCACACAATGAGTCCTCTCTACTATGTGTCCTTATTTACCTAGTTAAGTCTCCTCT AACTGAATAACTACCCTAACTAATCCTTATTACTACTCCTCTTTACATAAGGGGTTTTAGAATGAGCTAATCTGAAAAAC GTGCACATTTTGTTCTATCATCTATGAACTCCTGTGAGCATACATTGTTTTGACCTCAAACAGTATGCATGGAATAATTA ATCCCAGATTTGTATTATGAGGTTAAGTGCATGACCAAATTATGAAGTAAGCATGTCTCTTGAACACCCTCGTGAGTCAA GATACCTCAATTACTCCTTTATGTTTGCGGAAGCTCACTGAATGCCTTGGTAGACTTAAAGTGATTAGACCAATAAATTA GTTCAAACTCAAAATTCTAGTTAACCAAAAGGCTCTAGTCACTTTGTGTCTAGGACTATAATTTTAGTATTTAACTATTT ATGATTGTGTATTAATTTAGTGATTTATGCCAGTCAAATATCATTGTTTGAATTAGTCAGCCTTCTTTCTCTGGACACAA TGAGTTGTGTGTTCTGTATTTCATATATGAATTTCAGTTATTTTCTGTAGGAATTTCTAAAATTGTTCATAAGAGATGGA TTTCAGTCAGTTAATATAGCTATGGATATGTTATCTTAAAAACATCAATTAATAAAGTCCCAACTTTTAGAGCATTATAG ATATGCTTATCCAATTTTAGATTGAAATGCTTACTATAGGAATGGCAACTCTACAGGCTATTGCATTAACGGTCGTATCT ATTGGTGTTGCTGTGGCTACAGTGACTGACCTGCAGTTCCATGTGTTTGGTGCCTTTGTAGCACTGGCGTGGATTGTACC TAGTGCTGCTAACAAAATCCTCTGGTCCCGACTGCAGCAGCAAGAGAACTGGACAGCTTTGGCGTAAGTAATTCATTCAT TTATTCTTTAGGCCAGTTTAGGGTTAAAGGAGGAAGATTGTGTGTTAGTCTATGGCAACAGACATAAAACTAGCCTTATT TTTAATATGGATCAAGTGATCCATATAGCCGAACTGACTTAGTGAGATAAAAGTTGTTATTGTTTATAATACTGTTAACC CTGGCCTCCCCTCTCAATTTTCAGCGGTGATTCGCATACAAAGTTGCTTTCTCTTTCTTGCCTAATTTTTTGATTGATCA ACAGGTTGATGTGGAAAACAACACCTATTACTTTAATTTTCCTGGTTGCTATGTTACCCTACTTAGACCCTCCAGGTGTA CTATCCTTTGATTGGAACTTCAACAACACACTGGTGATTCTTATATCTGCTATTCTTGGATTTTTGCTTCAATGGTCTGG TGCTTTAGCACTGGGGTGAGTTACATGCATTATTCTTCTTTTAATTATTGAATGATTTTTCTGTAAAAATAATTCCAATT TCAGTTTCTGGTAGAATGGTGTAGGAACCACTTGTTTAATATTTCTAGGTTGTTTTAAACACATAATCAAATTTAGTGTT GATTCAACGATGGCTTGACTTCCAATGTGCCAAACATGAACGAGGTCACTTGTTTTTTTTCCCGCTTGCTTTATGATAGT ACTTAATGACGAGTGCGAAAAATGTAAGTCACATTTTCTGCTTCCTTAATGGTGAATCAGTGGTTCACTGTTGAAGAGGA ATATGCTTTATTTCAGTTGACAAAGGTGGACCGAGAAGCCTGTGGCCGCATTTGATTCCATCTTTGTTTCTTTTGTTCTC ATAGTTCCTGATCTTTTATTATTTTAGTTTTTCTCTATTTTTCCAAATTTTTTGTTGTTTTAGAAATCTAAGACCATTTA TCACTTTTTATTTCAATGATAGTGTATACCCTCATTTACTAGTTTAAGAAATTTATTGAAATTAGTTGAAAATAGGTTAT AAGTAAGCATAAGCTCTTCTCCATAAGCTATTCTGACCAACTTATGAAAATTAGCTCAAACCATCTTATAGGTAGGCCAT AAGCTATCCCAAACACTTGCATAAGCGCTAATACTATCATTCTCTTTTTAACATATTTCACTTAAATAAGTGTGTTTTAG TCAAGTTCATATCAATTAAAAAGCTCTTAAACTATGTGCATGACCTCAAACAACAAAAGATGAGGAATGGAGGTAGTAGC ATTTCAATTTCAAGGAGGGTCCAGATCACTCTTATTATGAATTATGGGCTACTTATATGCTTTGTTTTAAACAATTACAT ATGTTTTTTTGCGCCTTTGGCTTATTTATCCGTATTCCTGTAAAGACTTGATAAATTCAGATTTGGCTAGATATTTTTGT AGAAGTCACATATTATTCTAATTTCCTTCCAACATCAATGATATCCATGAACTTCAAAATTCTGAAGTTGTATTTTTTAG TGACAAACCACCCAACTAACCAATCCTCTTAAAAAATACTAAAAGAGTGATCCTCCTTGTATGAGAATTTCGAAAACAGT TTGTATATATTGCATAGTGTAATGGTTATGTGCTAATACTGATGGTGCTCTCTATGTCCAGACTTCAGACGCACTAGTGA ATAAGTGTGACATGTTTGTGACATTAATGACAGATCTTTTAAAGACTGTTCTAACATATTGTTTGCCAATGCCAGATATT CACTGATGTTCATTAATTGTTTTTTTTTCGTTGCTGTTTCTATATTACTGTTTTAAACATGCAGTATAATGCATTGTTTC TACCTGGTTTCTTCTTATATTTTCTTGGTCATGAAATTTACAGTGCTACGTCCGCCATCTCGCATGCTGTTCTTGGGCAA TTTAAGACGTGTGTACTCCTCCTGGGAAACTATTATCTTTTTGGGTCGAATCCCGGCATAATCAGTATCTGTGGAGCAGT TACAGCCATTACCGGCATGTCTGTTTATACTTGTCTTAATCTGAAGCAGCAATCAAACAAGATATTTCCTCAACAGGTCT CCCATGTAGCAAAATCTAAACTTAGCAAAGAAAATGGCAGTTCCCAAAATGGACATTACGGTGCAGAATCCGTCTAA
CDS sequence (LotjaGi4g1v0307400.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACAAAATGGTGCTTCAAACTGTCAAATTCAAATTCCCGATATTTCTCTCACTAATTCACTATGTTGTGAGCTGGTT CTTAATGGCTCTACTAAATGCATTTTCTTTCCTCCCTGCATCTCCTTCCTCAAAAACTCCGCTGTCTGCTTTATTTACTC TTGGATTTGTTATGTCTCTATCTACTGGCCTTGCTAATGTCAGCTTGAAGTATAATAGCATTGGTTTCTATCAGATGGCA AAGATTGCAGTAACACCTTCAATAGTTATGGCAGAATTTGTTTTGTACCGGAAGAAAGTTTCTTGTCAAGCTATTGCATT AACGGTCGTATCTATTGGTGTTGCTGTGGCTACAGTGACTGACCTGCAGTTCCATGTGTTTGGTGCCTTTGTAGCACTGG CGTGGATTGTACCTAGTGCTGCTAACAAAATCCTCTGGTCCCGACTGCAGCAGCAAGAGAACTGGACAGCTTTGGCGTTG ATGTGGAAAACAACACCTATTACTTTAATTTTCCTGGTTGCTATGTTACCCTACTTAGACCCTCCAGGTGTACTATCCTT TGATTGGAACTTCAACAACACACTGGTGATTCTTATATCTGCTATTCTTGGATTTTTGCTTCAATGGTCTGGTGCTTTAG CACTGGGTGCTACGTCCGCCATCTCGCATGCTGTTCTTGGGCAATTTAAGACGTGTGTACTCCTCCTGGGAAACTATTAT CTTTTTGGGTCGAATCCCGGCATAATCAGTATCTGTGGAGCAGTTACAGCCATTACCGGCATGTCTGTTTATACTTGTCT TAATCTGAAGCAGCAATCAAACAAGATATTTCCTCAACAGGTCTCCCATGTAGCAAAATCTAAACTTAGCAAAGAAAATG GCAGTTCCCAAAATGGACATTACGGTGCAGAATCCGTCTAA
Protein sequence (LotjaGi4g1v0307400.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNKMVLQTVKFKFPIFLSLIHYVVSWFLMALLNAFSFLPASPSSKTPLSALFTLGFVMSLSTGLANVSLKYNSIGFYQMA KIAVTPSIVMAEFVLYRKKVSCQAIALTVVSIGVAVATVTDLQFHVFGAFVALAWIVPSAANKILWSRLQQQENWTALAL MWKTTPITLIFLVAMLPYLDPPGVLSFDWNFNNTLVILISAILGFLLQWSGALALGATSAISHAVLGQFKTCVLLLGNYY LFGSNPGIISICGAVTAITGMSVYTCLNLKQQSNKIFPQQVSHVAKSKLSKENGSSQNGHYGAESV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 1 | 264 | 264 | 7.0E-15 | ||
| PANTHER | 1 | 296 | 296 | 2.0E-165 | – | |
| PANTHER | 1 | 296 | 296 | 2.0E-165 | – | |
| Phobius | 1 | 14 | 14 | - | – | |
| TMHMM | 13 | 35 | 23 | - | – | |
| Phobius | 15 | 38 | 24 | - | – | |
| Phobius | 39 | 49 | 11 | - | – | |
| TMHMM | 50 | 69 | 20 | - | – | |
| Phobius | 50 | 69 | 20 | - | – | |
| Phobius | 70 | 74 | 5 | - | – | |
| Phobius | 75 | 95 | 21 | - | – | |
| Phobius | 96 | 101 | 6 | - | – | |
| TMHMM | 100 | 119 | 20 | - | – | |
| Phobius | 102 | 120 | 19 | - | – | |
| Phobius | 121 | 125 | 5 | - | – | |
| TMHMM | 124 | 146 | 23 | - | – | |
| Phobius | 126 | 146 | 21 | - | – | |
| Phobius | 147 | 157 | 11 | - | – | |
| Phobius | 158 | 179 | 22 | - | – | |
| TMHMM | 158 | 180 | 23 | - | – | |
| Phobius | 180 | 190 | 11 | - | – | |
| Phobius | 191 | 209 | 19 | - | – | |
| TMHMM | 195 | 217 | 23 | - | – | |
| Phobius | 210 | 220 | 11 | - | – | |
| Phobius | 221 | 242 | 22 | - | – | |
| TMHMM | 224 | 243 | 20 | - | – | |
| Phobius | 243 | 247 | 5 | - | – | |
| TMHMM | 247 | 269 | 23 | - | – | |
| Phobius | 248 | 267 | 20 | - | – | |
| Phobius | 268 | 306 | 39 | - | – | |
| MobiDBLite | 287 | 306 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0307400.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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