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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0308900 |
| Transcript ID | LotjaGi4g1v0308900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Extracellular ribonuclease; TAIR: AT1G29310.1 SecY protein transport family protein; Swiss-Prot: sp|Q03091|BSN1_BACAM Extracellular ribonuclease; TrEMBL-Plants: tr|A0A151R300|A0A151R300_CAJCA Extracellular ribonuclease; Found in the gene: LotjaGi4g1v0308900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:68465828..68469227) extracted from Lotus japonicus Gifu genome v1.2.
CGAAAATATGAAGACGTTCACAGCAAGTGAGCTTGTGCCAACCACGGTGTTTTCAACCCGCCGGCACTTCCCCGGAAATG CAGCAATCGAACTTCACACAACCGCAGCACCACCACCGCGCCGGCGCAATTGGGTTGCTCGTGCTCGTGCAACCCCTCGA AAACCGCCGCCGATTCCAATTTCCACCAACATCGACGACAACAGGTCTCGTTTTTCTCCATCGTAATCTTCAATGTTAAA CTGTGTTGAATGAGAATTCTGATTCTGAAGCTAACTCTTCTGTTCTGTTCTGACAGTATCTGGTGGAGATGGATTTCTAG ACTCATCTCCATTTACTTGTTATCTCTCAATCTGGTTGCTGCAGCTTCTGATTATCAATCTCCTTCTACTTATTCCTGTG AGGACATTGCCAACTACTATTCCCCTTTGAAGAATTCAAGGTTAAGAGGTGAAGCATTCAAGAGAAAATTGAACACCATC ATTGCCCCTCATCATTCCTTGTCCTACCAACAGGTTTGGGATGCCCTCAAGGTTCTTGATGCTGCTGATGTTGATAAACC AGAAGCTTCATTGGGAATGCATGTCCTTATCAGTTATCATGGCTTTTTCTTTGTTTTATATTTTTCCATTTATTTATGAA CATCTTCTGTTTATGGCATTAGCTGATTTTTATATATTATGCTATATATGCAGAGTTGAGATATACTCCTTAAGAGTTGT TCCCAAAGAGCTATCAGGAAAGCCACAGGGATGGAATAGTGAGTTAACTAACCAATTTGTTGGACTTACCTTGGTTTTGA ATTTTGATGTTGGTTTTTCACTAGTCTTAATTATCATATGGCTTTTCAGGTGTTTCTCCTAGCCTTTTTTTTAGTAGCAT GCTCCTTCTCAGTTGCTATTTTAAGTATTTATAAATTATAACTAAAGTGTAAAAATGCAACCTATGTTTCATTTACATGA TAAAACATAGGTGTATTTGATCAAACTCCCTTTGTGGGCCATGCCAAAGTAGCAAGGTTTGAGCCTATATTAACTAGTGA TAAATGCACATGAAACTTGTTTTGAACACTTGATCCGTGGCAGTCCCTCAACCTAAATGAATATTGACGATAACAAAGAG GCTTAATCACAAAATTGGGGATGCAAAATAATTTTTGTCTTGCCCAGGGTCTCCTATATCAGGATTAAGGTTAAGGTTAT GCAGCCAACACACACACACACACAGAAAGATAGAGCAAACTTCACTTATTTACATTTTAGTTTTTAACAGGGGAGCATCT ATGGCCTCGTTCCTATGGGCTGGCTAATGGTCCATCTTTGACTGATTTACACAACATTCGCCCGGCTGACGTAAATGGTA AGGAAAGCCACTGCTCATATTTTACTGATCAAGGTTGTAATATCAGTTGATGCTACCAGTTTCTCTTAGTCAATTCATCA AGGGGAAACAAGTACTATGGTGAATGCGTAACTAGCTCGACCAAATGTTTGAGGCCGGCCAACAAAGAGGCTGCTTTGGA TACTGAAACAGACAAGAAGAGGTGGGCACCACCTATTCAGGTCATCTCTTCTGTCTTTCATTTTTGTTTTTAATGGTTAT TTCAAATGTATATCTGGCTTGGTAGTTCCACTGCCACCATGTGTTAATTTGTATTTTGTGTTATCCTGCCCACCGTTAAA ATTATGTCATCTGATCTATTTTGGTTAAAGGTGTATTGGACTGGGGTTGGAGCATTTCACTTAGACTAAGCCCATGACAT CAAGATTTTATTCAAATCTTTTTAACTGATTTTCACAGGTACCTTGAAAACAAATAGCATATGTTATCAGGAACCTAGAT AGATGCTGCTCCAGCACTTAACTGCATACATTTGTTGTTAGCTCTAATGTCTTGTGACTCTTATCACCTGAACAGTAATA TATTTTGTACTTAAACTTCGTTTTGGATATATACTTCTTTCATATATACATGTATTGACCTTAAAATAACCTCAGGTCAG AGGGGATATTGCAAGGGCATTGATGTACATGGCAGTCTGCTATGGGTTTCCACAACCAGGAGGAAGTCTTGGTCTGCACC TTTCAGATACTCCAAATGCTGGTAGGTTAAACTATTGAAGTTCTCATCCAACTATAATATTTGGACTCTGACCTAAATCC CAACTCCCAAGCGGGATATATGTGCATTACTTTTGTTTTTTTTTTAATTTTCAGTATATTTATCTTGCTTGTTAGGTGAT TAGTTTTATGACCTCATGTTGGCCATTATTTATATCTTTTGAAGTTTTAATCGTACTTTGATAAACTCAAGCTCATGTTT AATCATTGAAGTTAGAATCTTTAAAACTTGGCATCCAATACGGATAAAGATCTGAAATTCTAGAAAACTGATTATTCATG ACATTGTTTATTTTGCATTCTGAAAACATCCTTTTTTTTCTTTCTAAATGTTTGCTTTTGATTATTTTGTTACTCTGCAA ATGTTGACGCTAGGTTAAAGGCTAAAGCTAAAGATTGCTCAGTGGGCGTTTGTTCTTTTTTCTTTCTAAAGATTATCTTT TGGTACATTGGGGTCATTCCCAACTAAAAAACAAACAAACAGCCTCAGTTAGTTTGTTATTCTTTGGTGTATTGCAACTC TGTTTTGGCTTCAGATAAATTGTGTATAAAGTAACCGTGGTGCTTGTGTTTAATCAAATACTGTCCTTGGAAATTCTCTA ATTGATTCTTATGGTTTCGAAACTAGTTGACACTACAGCTTTCATTACATCTGTTGTAACTTTCAATTTGTTATACCTTC ATGTTGAAAATAGTATTATCTCTTCACCACAGAAAATAGGGAGATGGGGCTGCTTTCCACATTATTAAAATGGAATGAAG CTGATCCACCTTCAAGGGAAGAGAAACTAAGAAATGAAAGAATATGCAAATATTATCAGCATAATCGAAATCCTTTTGTT GATCATCCGGAGTATGCTGATCTTATATGGAAGCAAGCTGTTTCAAGATGGGCTCCTTTTAATGATAATAATAATTAGGG CGTTGCTCCGGCACCCTTACAGAAAGAGAAGGTACGGTACCTTTCAGTCTATTGTTTAACAAATAGAGTGACAATGAGTG TCTCAGCTCCCGTTTGAGTATACGTTTGCATTGCTGGTACAAATTGCAAATATATGTTTGCTGAGAAACAATTTATTGCT TACCATCTTTAATATCTTGTACAGATGGAATACTCTGTAACTGATTCTTCAAGTTTTTATTATACCTTACTACATTAACT CTGAGTTAAACTCTCAGAGATTATAAACACTTTATTTGTTTCATCTGCCTCAGAAGACAGTTGGAAAATTGTAGTTACAA AAAGTTAATATCAAGTCAAATTGGTTTGATTATATGTGTG
CDS sequence (LotjaGi4g1v0308900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGACGTTCACAGCAAGTGAGCTTGTGCCAACCACGGTGTTTTCAACCCGCCGGCACTTCCCCGGAAATGCAGCAAT CGAACTTCACACAACCGCAGCACCACCACCGCGCCGGCGCAATTGGGTTGCTCGTGCTCGTGCAACCCCTCGAAAACCGC CGCCGATTCCAATTTCCACCAACATCGACGACAACAGTATCTGGTGGAGATGGATTTCTAGACTCATCTCCATTTACTTG TTATCTCTCAATCTGGTTGCTGCAGCTTCTGATTATCAATCTCCTTCTACTTATTCCTGTGAGGACATTGCCAACTACTA TTCCCCTTTGAAGAATTCAAGGTTAAGAGGTGAAGCATTCAAGAGAAAATTGAACACCATCATTGCCCCTCATCATTCCT TGTCCTACCAACAGGTTTGGGATGCCCTCAAGGTTCTTGATGCTGCTGATGTTGATAAACCAGAAGCTTCATTGGGAATA GTTGAGATATACTCCTTAAGAGTTGTTCCCAAAGAGCTATCAGGAAAGCCACAGGGATGGAATAGGGAGCATCTATGGCC TCGTTCCTATGGGCTGGCTAATGGTCCATCTTTGACTGATTTACACAACATTCGCCCGGCTGACGTAAATGTCAATTCAT CAAGGGGAAACAAGTACTATGGTGAATGCGTAACTAGCTCGACCAAATGTTTGAGGCCGGCCAACAAAGAGGCTGCTTTG GATACTGAAACAGACAAGAAGAGGTGGGCACCACCTATTCAGGTCAGAGGGGATATTGCAAGGGCATTGATGTACATGGC AGTCTGCTATGGGTTTCCACAACCAGGAGGAAGTCTTGGTCTGCACCTTTCAGATACTCCAAATGCTGAAAATAGGGAGA TGGGGCTGCTTTCCACATTATTAAAATGGAATGAAGCTGATCCACCTTCAAGGGAAGAGAAACTAAGAAATGAAAGAATA TGCAAATATTATCAGCATAATCGAAATCCTTTTGTTGATCATCCGGAGTATGCTGATCTTATATGGAAGCAAGCTGTTTC AAGATGGGCTCCTTTTAATGATAATAATAATTAG
Protein sequence (LotjaGi4g1v0308900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKTFTASELVPTTVFSTRRHFPGNAAIELHTTAAPPPRRRNWVARARATPRKPPPIPISTNIDDNSIWWRWISRLISIYL LSLNLVAAASDYQSPSTYSCEDIANYYSPLKNSRLRGEAFKRKLNTIIAPHHSLSYQQVWDALKVLDAADVDKPEASLGI VEIYSLRVVPKELSGKPQGWNREHLWPRSYGLANGPSLTDLHNIRPADVNVNSSRGNKYYGECVTSSTKCLRPANKEAAL DTETDKKRWAPPIQVRGDIARALMYMAVCYGFPQPGGSLGLHLSDTPNAENREMGLLSTLLKWNEADPPSREEKLRNERI CKYYQHNRNPFVDHPEYADLIWKQAVSRWAPFNDNNN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 63 | 345 | 283 | 4.3E-121 | ||
| SUPERFAMILY | 117 | 336 | 220 | 2.24E-43 | – | |
| Pfam | 117 | 336 | 220 | 2.4E-36 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nuclease activity | Catalysis of the hydrolysis of ester linkages within nucleic acids. |
Expression pattern of LotjaGi4g1v0308900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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