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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0309200 |
| Transcript ID | LotjaGi4g1v0309200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GATA transcription factor; TAIR: AT4G26150.1 cytokinin-responsive gata factor 1; Swiss-Prot: sp|Q9SZI6|GAT22_ARATH Putative GATA transcription factor 22; TrEMBL-Plants: tr|A0A151R302|A0A151R302_CAJCA Putative GATA transcription factor 20; Found in the gene: LotjaGi4g1v0309200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:68487636..68490164) extracted from Lotus japonicus Gifu genome v1.2.
TAGAAATTACTCACACAAAGCACGTACATAATATAATTTAATTTGAATACATTTATCTTATCTCAATACTACCATTTATG CAACTAGGATGATCAGGTTATTTATATGATTAGAAAGCATGGCATGTTTGCCGTATATATCTTCTCTCTACCTCCTATTC TCCCCCTCTCAGCCCTCTTCGACCTTTGATTACTAGACAAAAAGAAGACCGTTTCAGCTGCATACTTGCACTGATCCATC TCTCACCTCTCATCTCTGCTCTGTCCTCTGTCCTCTCTCTGTGTGACTTGATTTGTCTGTGAGTGTTTATGTGTGTGCGT CCATGATACCAGCTCACCGCCCTTCAGTGTCACCCTCTCTCATGCCTCTTGATCTTAATCAAGATGATCAAAACCATGAT GAGCTTTTCAGCCCAAACCATCTTGTAGCCTCTTCTTCATTTTCTTCTATTTCATATCCTATCCTCTTCAACCCACCTGA TCAAGATCAAGAAGGATCATACTGCTGGGAACCCAAGCACTCACCAAATGAGGAAGAGGTGACATATTTACATACCAAGT GCATGTTTCAAAATCTTTCTGATTTGAGAGTCATAATTAATTCTACGGATCATCGAAGCTTCTTCAAGTAGCTTATGATT TTCAAAGTTAATTTTTTAGAATCAGAGCTAATTAAGAAAAAAAATCAAAGGCGGTGTTATAAAGCTCCTGCTATGTGCAA GGTGTAGGAAAGGCCAGAGTTAATCCAAACATGATATAATTAATTAAGCTGCATATAGATAGTATTATTATTAGTAGAAA ACTTGATCCCTTCCCTCAAAGTACTTATGATCACTAGGATATTATATACCTCTTTGTTTTAATCCGTTTTTGTTATGTGA TCTTTAGGACGAGAAGATTATTATTCCTTCTAGCGGATCATGGGATAATTCAGCTGCAGAGAAGCATGGCAGCAGCAGCA AACATAAGCTGAGAGTTTGGAAAAGAGAAGAAAGGGATGGTGAAAATCTTGAAGAAGCTCATGAGGATGGTTCTTTATCA GTGAAGTGGATGTCTTCAAAGATGAGAATTATGAGGAAGATGATTGTTCCTGATCAAAGGGGAACTTCTTATGCTGTAGC TGAAAACACTATGCAGAGATTTGAAGATCAAAAGCTACCATTGTCACCTGTTGGAACTGACAATAGCAGCAACAATTATT CAAACCAAAGTTTTAACACTGTTAGGGTTTGTGCTGATTGCAACACCACTAAGACACCTCTCTGGAGAAGTGGACCAAGA GGCCCCAAGGTAAATCCAAGAAAAACAAAAAATCTCAATGGATTCCACGTACTCAACAATTTTTGTTGCTTGGTAACGAC CAAGTTCTAAATTTTCATTTTTAGTCTCTAACAGTACATATTTGTTTACACAATTTATACAAAATTCAAGTCATCAGGTT CACTCATAAGTCATAAGTTAAGCCTTTTAATTTAGCTTCTAAAAGAGGTGATTCTACAACATTTCAGCGTGGAACCAAAT ATGCGTGTGTTGGGTTATGAAGAAGATGAGTTATAGTTTGTAGAATATAATTATGCAATTTTGTCTCATTCCTATCCAAA CACATGGCTTGCTTGTTTGGATACATATAGAAGATCACAGCAAAGCTAAAATCACAGTGAATATAGAAGCAGTTTTCCGA CTCCCTTATCATATTTTTAGCCACAATGTGGTTTTCACCGTGTATCTTAGAATTAGAAGAATAGAATGATAAGAATTATT ATTGTTAACATTTTGCTAATTAACCATGATGATGAAAACTTATATAATTTGGTGTATTTATAACAGTCTCTTTGCAACGC ATGTGGGATCAGACAAAGGAAGGCAAGACGTGCCATGGCGGCGGCTGCTGCAGCTGCATCGGGAGACGGTACGATTCTCG TGACAGCTGAGTCATCTGTGAAGAACAGAAACAAGTTGGTGAAGAAGAAAGACAAGACCAAAGTTGAGTCTGCACCACCG GTAGCCCAGATAAAAAAGAAGCACAGAGCTAATAAGCCATCTCAAAGTAAAAAGAAGTTCGGTTTTGAGGATTTGACATT AAGCTTGAGCAAGAACTTGGCTTCTCTCCAACAAGTTTTCCCTCAGGATGAGAAGGAGGCAGCGATATTGCTCATGGCTT TGTCTTATGGCTTAGTTCATGGATGAGGTTTCTAGATAATTAGATTTTTTATATGTATTGCTATCTTAGGAGTGGTTTGA TTATTAGATCATAATTGTGTGAGATCCATGTTTGAATTGTAAGAGAAGAGTATGCACTGGAGTTAGTTATAATATATAAT AGGGGAAGGGTGGAAGAAAAAAAGGCAATAATTGTTGTAGTGAGTGATCTAATTAATAATGAACTTAATTATATAGAGGT TTGATTTGAACAAGTAGAGAATCAAGAAGTTTGAGTCACTTGTTCATGGATTTCTTATTGTCTCCACAAGTAAAATAAAA TCTTCAAGTTATTTATGTTGAACCTGTCATTGCCCAATTTTGTAGTCTG
CDS sequence (LotjaGi4g1v0309200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATACCAGCTCACCGCCCTTCAGTGTCACCCTCTCTCATGCCTCTTGATCTTAATCAAGATGATCAAAACCATGATGA GCTTTTCAGCCCAAACCATCTTGTAGCCTCTTCTTCATTTTCTTCTATTTCATATCCTATCCTCTTCAACCCACCTGATC AAGATCAAGAAGGATCATACTGCTGGGAACCCAAGCACTCACCAAATGAGGAAGAGGACGAGAAGATTATTATTCCTTCT AGCGGATCATGGGATAATTCAGCTGCAGAGAAGCATGGCAGCAGCAGCAAACATAAGCTGAGAGTTTGGAAAAGAGAAGA AAGGGATGGTGAAAATCTTGAAGAAGCTCATGAGGATGGTTCTTTATCAGTGAAGTGGATGTCTTCAAAGATGAGAATTA TGAGGAAGATGATTGTTCCTGATCAAAGGGGAACTTCTTATGCTGTAGCTGAAAACACTATGCAGAGATTTGAAGATCAA AAGCTACCATTGTCACCTGTTGGAACTGACAATAGCAGCAACAATTATTCAAACCAAAGTTTTAACACTGTTAGGGTTTG TGCTGATTGCAACACCACTAAGACACCTCTCTGGAGAAGTGGACCAAGAGGCCCCAAGTCTCTTTGCAACGCATGTGGGA TCAGACAAAGGAAGGCAAGACGTGCCATGGCGGCGGCTGCTGCAGCTGCATCGGGAGACGGTACGATTCTCGTGACAGCT GAGTCATCTGTGAAGAACAGAAACAAGTTGGTGAAGAAGAAAGACAAGACCAAAGTTGAGTCTGCACCACCGGTAGCCCA GATAAAAAAGAAGCACAGAGCTAATAAGCCATCTCAAAGTAAAAAGAAGTTCGGTTTTGAGGATTTGACATTAAGCTTGA GCAAGAACTTGGCTTCTCTCCAACAAGTTTTCCCTCAGGATGAGAAGGAGGCAGCGATATTGCTCATGGCTTTGTCTTAT GGCTTAGTTCATGGATGA
Protein sequence (LotjaGi4g1v0309200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIPAHRPSVSPSLMPLDLNQDDQNHDELFSPNHLVASSSFSSISYPILFNPPDQDQEGSYCWEPKHSPNEEEDEKIIIPS SGSWDNSAAEKHGSSSKHKLRVWKREERDGENLEEAHEDGSLSVKWMSSKMRIMRKMIVPDQRGTSYAVAENTMQRFEDQ KLPLSPVGTDNSSNNYSNQSFNTVRVCADCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAAAASGDGTILVTA ESSVKNRNKLVKKKDKTKVESAPPVAQIKKKHRANKPSQSKKKFGFEDLTLSLSKNLASLQQVFPQDEKEAAILLMALSY GLVHG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 24 | 24 | - | – | |
| PANTHER | 1 | 325 | 325 | 2.2E-98 | – | |
| PANTHER | 1 | 325 | 325 | 2.2E-98 | – | |
| MobiDBLite | 52 | 118 | 67 | - | – | |
| MobiDBLite | 64 | 78 | 15 | - | – | |
| MobiDBLite | 91 | 118 | 28 | - | – | |
| SUPERFAMILY | 179 | 221 | 43 | 5.23E-13 | – | |
| ProSiteProfiles | 181 | 217 | 37 | 12.545 | ||
| SMART | 181 | 232 | 52 | 7.9E-20 | ||
| Gene3D | 182 | 226 | 45 | 1.5E-12 | ||
| CDD | 186 | 218 | 33 | 7.36414E-15 | ||
| Pfam | 187 | 221 | 35 | 6.5E-17 | ||
| ProSitePatterns | 187 | 212 | 26 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi4g1v0309200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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