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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0316700 |
| Transcript ID | LotjaGi4g1v0316700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA-binding protein; TAIR: AT1G09520.1 hypothetical protein; Swiss-Prot: sp|O15344|TRI18_HUMAN E3 ubiquitin-protein ligase Midline-1; TrEMBL-Plants: tr|I1LYE7|I1LYE7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0316700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:69414915..69416648) extracted from Lotus japonicus Gifu genome v1.2.
TTCCCACCAATTTTCCCAACCATAGTCTCCATTTTCATTTTCAGCTCACTCTCACTCACTCTTTAACTTCTAGGGTTACC GTTACTCCCTCGCCACGTACGGAGGCTCTCTCCTCCGTCAAATGCCACTCCGATGAACCCGCTACAACCCTCCGCCGCCA CCTGCGACGGCTGCGGCGCCACCCAAGACGCCTTCCTCATCATCCACAACATTCGCTACCTCGCCAGCAACCACCGCTAC TGCACCAACTGCGTCCTCAAGCACCACCACGGCGTCTTCTGCCCTATCTGCTTCGACGTCTTCGAAGAAGGCTCCCTCCT CCCTCAGCTCCGCGTCATGTGCGTTCGTTGCCCTAACATCGCTCACCGATCCTGTGCGCTCACCTCCACCGTCGCTTACC CTACCTCCGCACCCGCATTCCTCTGCCCCACTTGCGCCGATCCCGAATTCGCATACTTCCAGCTCCCTGATCGGAAATCT GGAGCTGTCGATCTCCAGTCCGCGAAGATGCTCGTCGCCGCCGCTCGGATTGCTGCTGTTTCCATGACGAAGGCGGCTGC AGCTGCTCGGTTTGACGCCGAGCGGCGGGCGAAGGAAGCTGCCGTGGCGAGGAGGAAGGCGAAGGAGGCGCTGGAAAACC TCGCTAGTATCGTCGCCATGGAGCAGATGGGAGTTTCTGCTCAGAATGCTGGTGTGCGTGTCACGAATTAGAGTACTTTG CCATCAAAACTTGCATTGTAATTTAGATTTAGACTGTTTGATTTGGGCAAGTGCTGAATTTTTTGTGCCAGGATTTGGTT AGGGCTAGTTGACTGCATCATTCATATATTCAAATGCTCAGTTATTCTGTTTCGTGTATAATATTCGTGACCGGATTTAT CATTTTAGAAGTGAATTATGTGTCGGATATGAGTTTGCGATCGGATTTATCATTTTAGAAGTGAATTAAGATTGTCTTGT TTGAACTGGGTATGGTGGTGCTCTAGATGTGTATGATTTTTTTCGTGGTTCAGCTAATATCTCTTCAACAATCTCCTTGA CCTACTGCATGTTTGGATACATGGTGAAAAACCACGATAAAGCCATAATCACGGCGGACAACTGCAAGAGCTAAGAGAAG TTGCTTCTGTCCATCGTGATTTGTCACCTTGTCTCCAAACATACACCTAGTTTCACTTGTAAACCTCTTGTAGGTGAAAT GTCCTGCATAGTTATTCTTTGCCGCAAGCTCTGGTTGTGTAGTGTTATGGTTTTTTAGGGGTGTACTTGAGGGCACAGTC ATGGGTCCTTTCACTTATAAACTATTCATTACTCTCTTATTTATTCGATGTGGAACTTCTTTATTTATTTTTTTCTTATT CTCACACTTGAAGATTCCCAAAATCTAGAACAGGATATCAGTTTTTTTTGCACTTTGTCAATGTACTGAACTTTGCACTT TCTGTGATCTTTCTTTGGGTTTTAGTATTAGTGCACAAATATCCAATAAACAAGTACAAGCTCCAATTTTTGGAAGAATG ATAGTGAATGAGTGATTAAGTGCAACCAGGCCTTAGACATCAGGGATGCTTCTTTAGGAACCAGGGTGGCTGATAACATA ATGTTCTTGCAGAAGTTGCTGGCTGTAGGAATGTAGTCAAAAGCGCGCTTTAAAGCGCTAAAGCTAGCTTTAGGGAGCCC CGCGCTTCAAGCGGTGGCTAAAGCGGAAATCTGCAGAAAGCGCAGCGAAGTGGG
CDS sequence (LotjaGi4g1v0316700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACCCGCTACAACCCTCCGCCGCCACCTGCGACGGCTGCGGCGCCACCCAAGACGCCTTCCTCATCATCCACAACAT TCGCTACCTCGCCAGCAACCACCGCTACTGCACCAACTGCGTCCTCAAGCACCACCACGGCGTCTTCTGCCCTATCTGCT TCGACGTCTTCGAAGAAGGCTCCCTCCTCCCTCAGCTCCGCGTCATGTGCGTTCGTTGCCCTAACATCGCTCACCGATCC TGTGCGCTCACCTCCACCGTCGCTTACCCTACCTCCGCACCCGCATTCCTCTGCCCCACTTGCGCCGATCCCGAATTCGC ATACTTCCAGCTCCCTGATCGGAAATCTGGAGCTGTCGATCTCCAGTCCGCGAAGATGCTCGTCGCCGCCGCTCGGATTG CTGCTGTTTCCATGACGAAGGCGGCTGCAGCTGCTCGGTTTGACGCCGAGCGGCGGGCGAAGGAAGCTGCCGTGGCGAGG AGGAAGGCGAAGGAGGCGCTGGAAAACCTCGCTAGTATCGTCGCCATGGAGCAGATGGGAGTTTCTGCTCAGAATGCTGG TGTGCGTGTCACGAATTAG
Protein sequence (LotjaGi4g1v0316700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNPLQPSAATCDGCGATQDAFLIIHNIRYLASNHRYCTNCVLKHHHGVFCPICFDVFEEGSLLPQLRVMCVRCPNIAHRS CALTSTVAYPTSAPAFLCPTCADPEFAYFQLPDRKSGAVDLQSAKMLVAAARIAAVSMTKAAAAARFDAERRAKEAAVAR RKAKEALENLASIVAMEQMGVSAQNAGVRVTN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 185 | 181 | 4.6E-64 | – | |
| PANTHER | 5 | 185 | 181 | 4.6E-64 | – | |
| SUPERFAMILY | 44 | 102 | 59 | 1.93E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0316700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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