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LotjaGi4g1v0318700.1

Overview

Field Value
Gene ID LotjaGi4g1v0318700
Transcript ID LotjaGi4g1v0318700.1
Lotus japonicus genome version Gifu v1.2
Description Haloacid dehalogenase-like hydrolase superfamily protein; TAIR: AT4G33140.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|Q97DU2|Y3379_CLOAB Nucleotidase CA_C3379; TrEMBL-Plants: tr|K7LZ51|K7LZ51_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0318700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:69637442..69643185) extracted from Lotus japonicus Gifu genome v1.2.

GATACTTACGGAAAAAAGAAATTCTAAAGACTAAAGAGTGAGTGATAGGCTATAGTACCAAAACTTTGTAATGATCTTCC TCTTTCCTCTTTTGCTTTCAGATGTTTTCTCTTCAAATTTCCCCCTAAACTCAACACAGCCTCTTCAATTAATCTAATTC TATTGTGGGAATCTCAATGCATGTCAATGCCTATATATACTTTCCCAATGCAATGATTCTATATAAGGAAACCAAACAAA TACCACAATCTCAATCTAGCTACTGCATTAAGCACTGTGTTGTGAATTGTGATCATCAAGCATCTTCTGTAAACCCAACC AAAATTTCTCAGCTTTTCCATCATTTCCATTCACCCTCAATGTTCTCTCTTCTGGGTATTTGTTTAATTAATCCAATGCA TGTCAAAATTTGATTTTTAATTCCCTAGAATTTCCCCAATTTAAAATCTAGGGTTCATGTCGGTTGATTCCCATTTCCTC CGGATGAAATTGACCGAGAAAAAACACCGGTCCTTGTTAATTGGGCTGTTCAATTCAACCCAATAGATTCTTTTTTGGAA GTGAATATTGCACTTTTTTGGTGAGATTTATCCATTCAATTTTCCTTTTTTGTGCTGATGCTTGATATAAAAGCACAATT CTGAAGTTATTATGTCTAGATTCAAGAATTCTGAAGCCCTTGTTGTTGTTGCTCGCTTCGCTCTGCATCAACCCAACCTT CACATTCCAATGGCCAATTTGATGGGCTTTGATCCTTGTTTCCGATTGAACAGGGCCTTTTCCCAGTACCCTGCTCTTCC TGCTGCTGATCGTGGAACCTACATTTCTTCGCCATTTCTCCGAAATCTGGCTTGTGCTAATGTTTTTGGGGGTAAGAGAA GTGTTGGATTGGGTCCTAAGGGTTGCAGCTTTGTTACCAGTGGTGGCATTGGTAGTAAGTTTGCTGTGAGGGCTAATGCA GGGCCTCGCGGCTTTGCTACTCGTCGTGACGAGCCAATGCTAGCTGGTTTGGAGCAAGGGAATTCTGTTAGGGATGGTGA TGGTGATGCTGCTGTGGTTAAGGTGGATGATGGATCACTGAGTGGAAGCCCTACTGAGCCTGCTAGCTTCGGTGATCAGC GTTTGTTGTCGCAGAAACTTGTTGTTGCTGTTGATGTTGATGAGGGTATGTATGCAATTGTATATGCTTGTTCAAGTTCT TTTTATTATGATGTTGATCAGCATTTGTCCCAGAAACTTGTTGTTGCTGTTGATGTTGGTGAGGGTATGCATGCAATTGT ATATGCTTGTTCAACTTCTTTTTATTATGATGTTGATCAGCATTTGTCCCACAAACTTGTTGCTGTTGATGTTGATGAGG GTATGTATGCAATTGTAAATGCTTGTTCAACTTCTTTTTACTATGATGTTGATCAGCATTTGTCCCACAAACTTGTTGTT GCTGTTGATGTTGATGAGGGCATGTATGCAATTGTATGTGCTTGTTCAACTTCTTTTTATTATGATGTTGATCAGCATTT GTCCCAGAAACTTGTTGTTGCTGTTGATGTTGATGAGGGTACCTTTCATTCTTGTTGTAGCCACTCATCTTTGTCACTTG CCATGAAGATCGCAAATAAAAAACTCTAGTTGTGGAGTTTCTTGACTCAAATTGATAATCTCGTGACCTTTCCTTTGCGT TCGAAATTGATTACACAACTTGTTCCCACATGCGTCACCAATTTTTTTTCTAAAATCTGAGCTAGTAGATACTCATGATC TTTAGTGGTGGTGCATTGTCCTATGCAATTGCATGTGTTTGTGCCACTTCTTGTTTTGTTTTTAATATCATAGCATGTCT TCGATTTTAGGTACACATTTCACGAGTGGGAGAGGGAACCATATGTATGCTTAACTGGTAGAATATATATAGCTTCTGAT TGATGGATGTAGTTTAGTTTAGTTCTTTCTATCCTTTGCTGATTTTATGAATTCTGGGATAGGAGGCTTGGTATGTGAAT TCAAAATGTATTTGGATGTTGTGTAATGGGGTTGAAGCACCCCTTGTGCTTCCTAGTTTTCAATATATTCATTTGACTTT CTGAAAAAAAAAATCATAGCATGTCTTCAAAGTTTTATATGTTTTGCACCATTACTTTATCGACTTGAATTATGAAGACC TTGTGCAGAATCTTGACTGTGGCACTGATATGTTGATCCGTTTTTTTGGATTCGTGCTGATAGATAGCTGCAAAATTCTT GTCTAGCTTAGGGCTTGATTAATAGTGTCATTCTTGAGCAGTATGACTTGGGTTTTCCTTGCTAATGTGAATAAACTCAA CTCTTATTTATTGTTTGGATTTCAGTTTGCAAAACAAAGTTTGAGTGAATGTGGGTTTGCAAAACAGAGTTTGGGTCAAA GTGGGTTGTTGTAATGTGATTTATGTTTGGATACTTTTATTTCAAAATGGAGTTTGGGGTTTAAAGTGTGTTAGATGAAT GTAGAAGTCACAATTTGGTGAGTTGAGATGAAAGTTGGTTTGGGGCTAAAAGTGGGTTGGGTGAATGTGGTTTTTAATTT GCCAATCATAGTGGCACAAAGTTACATAAGAGCCAAAATACTTTTGGATGCCCCAACTGAAAATCAAACACACCCTAAAT AATGATTACTTGTCAACTCTGTGTGTGTATAATGATTGATGATCCCCTACATTCACAGTGTGTGTGATAAAATAACAATA ACAACAATCAAATTATTTTCCCTTTTGGTGGGGTTAGCTACATGGATTAAATGTTGCCGTAAAGTCTTGTCATGAACCGA GTCTAGAGATAGATCATTCAAATCTATATCTCTCTTAATGGTTAGACATGTAGTTATTCCTGGTTTTCCTATGTTTCTAG TTATTTATTGGACTGTTCTCTTCTCTCTTTACCGGTGTTTCTATGTGTCGTTTTCATAAGTGTCTGAATTATCTAATTCT ACAATTTCTTCAATGCAGTCTATCCATATGTTTTCTTTGGTGATTTCATTTTTTATTTTATTTTGCATTGTGTAAATACT CTCCATTAGTCCATTGTAATATTTTCATCTTTGTCGCATTGTACCACCTTAAATTATCTTTGTTTCTTTTCTTGATTTTT TACTCTATTGTAGATTTGCTAATACAGTTTTTTTATCATCCACTTTTGTTTTTTCTGATGTGTATGTTGCTCGTGTTCTT TTTTTGTGAGCAGTATTAGGAAATTTCGTGTCGGCACTCAACAAGTTCATTGCAGATCGATATTCATCAAATCATTCACT TTCTGAATATCATGTGTACGAGTTCTTTAAGGTATTATTTGTTCGCTTATTTGTTACTTCTATATCTTCATGATACGAGT TTGAGTTTTGCAAATTTTTAATAATATTAAACAATGTAAATGAAGAGGAACTTGCATGTTCTTCCAGAGGCTGATTTTTG CCCCCTATTCATCTTTCATAATAATGTAGCATTAGAATTTTTTTGTCTTCCTTTGAAATTAAACTTGTGCTGCATTAATT TTCTTTGGTGTTTATATTCCAGAATGTAATCTTAATGGTAATCTACTATTAATGATGGTACACATCAAAATCATGGTTTT GTCAGATTGGGGTGTTAGAATTGTGGGTTTCAGTTTCTTTTTCATGTTACCAATAGATTATGAGTGGGGAACTTCCTTTT GCATAATGAGATAGAGTATCATCATTAAATTGCCACTTAAAGTGCTTTATGTGTATTAAGGCTTCATCTTTGTTTTTTTT ATACTGTTTCATTTGCCTATGGTACCACAGACGATATCCCGAGACAAAAATGTTGAACCATGTACCTTTAAACATCAGTT AGGGACACTCATATAATTTAATTCATTGATGGCATTAATTCGAATTTCCAGATATTATACTTTCCTCCTTTCTGAGTATG TCTATAATTATTGTCTTGAACTGCAACTTACTGTATGCATCAGGATTGGCTTGTGCACTAGCGGCGCTATTAAAGAAAAA TTAACTGCTAAAAGCATAATCTTTACTTTTTACATCTAATGTAAGCCATTGCATATATTTGTGCATGTTAGAATGTGGAG CCTGATGCAACCTTTATTTCTGCTGCAGATATGGAACTGCTCACGCGATGAAGGTAAACTGTGTATCCATCAGACTGCCA TATTCTATTTTTCTACAGTTTTGCTCTTAAGTTTCTTATGTAAATCTGTTGGATGATAAAAAAAATCCTTCCCATTTATG ATATACCAACTACTTTGTTTTAAGTGTTACTTGTTTTGAAATCTGGAGGATCTTTCTCGCGATCAGATTCTCCATGAATT TAATTGTCAACTGAGTGCAATTCTAATAGTTTTGTTTTCCTGAAAATACAATTTCAACGGGAGCACCCCTAGTAATCCAA AAAAGGGGGACTAATTATTTCAAATGTATGATGTTGGGTTGCTCAAATGGTCAAGCAGTTCAATAATATTCTTATTTTGC CTGATGAAATTATTTTATGCTTCCAAATGACTAATGGACTCGTTCGATATCAAAATCTTGTTCTGCAGCTGATATTCGTG TTCATGAGTTTTTCAAGACACCATACTTCAAATCAGGGATCCACCCTCTCCCAGGTGCTAAGACAGCACTTCAAAAGTTA TCAAGATTTTGTAGCCTCTCAGTTGTAACGTATGCTTTTGGCATTGAACTTTTTTCTTCAACCTTCAAAGGCATATTATC AGGATCAACTAACCCAAATTGTTCTTATATGATCAGGTCTCGGCAGAATGTAATTAAGGACCACACAATTGAATGGATAG AGAAGAATTATCCAGGACTCTTTCATGAGATTCACTTTGGTAACCACTTTGCACTTGATGGGTTGTCAAGACCAAAGTCA GAGATTTGTAGGTATGACCCTTAATCCTGCATTTCTGGTGAAGTAGGTACACTTATTCACCTGCATTTCTGTGATTTGGC CTAAAACCTTCATGCTCTTTGTTCAAGTATTCTTCACTAGCTGTTTAGAATGTTTAATTGCTGATAAATTGCTTGGGTAC TGCCATTAACAGGTCTTTAAATGCCAAGGTTCTTATTGACGATAACCCAAGGTATGCCACAGAGTGTGCTGAAGCTGGAA TTGAAGTCCTACTATTTGATTATGAAAACTCATATCCTTGGAGCAAGAATGAAGCTGTTGACAAGCACCCCTTGGTGACC AAAGTTAAGAACTGGGAAGAAGTGGAACAACAATTGATGTCAGTGATGGCAAGGATTTGTTGAAATTACCCATGTATAAT GTACATTCTTGAAGAAGTGAAATCATTTGAGGTGGCTGCAAGGAGACCACCTACAGGGTTATATGGTTAATAAATATATA AATGACATGGTTTAGATTCTTTTTCCCATTTTGAGCAACTTCGATGAAGATTGGAATAGGAAGTTGTTCATTATTGTGGA ATTTCTCCTGATTTTACAATATCAATATTTAGTTAGAGATTTGTTCAATGCCTTCCATGAATGGAGACGTGGAATCTGAA TCATATGGCTGTAAAATTTTATGACTAATCTTGATCATCAAATTGTATGATCTCTGGTAGTAAACTTTATTGTGGTTTAA TCTGTGTTTTGGTCCACTTAGAGCTTGTTTGTTTTATAGTTGTGGTAAAGTTAACTTCAGTTTTTCCAACCTTAACTTCA GTTTTTCAAAATGTCCCTTGACCCTTGTGTTTGGAAAAAGTTTTTTTTTTTTTTTGAAATGGTG
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0318700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCTAGATTCAAGAATTCTGAAGCCCTTGTTGTTGTTGCTCGCTTCGCTCTGCATCAACCCAACCTTCACATTCCAAT GGCCAATTTGATGGGCTTTGATCCTTGTTTCCGATTGAACAGGGCCTTTTCCCAGTACCCTGCTCTTCCTGCTGCTGATC GTGGAACCTACATTTCTTCGCCATTTCTCCGAAATCTGGCTTGTGCTAATGTTTTTGGGGGTAAGAGAAGTGTTGGATTG GGTCCTAAGGGTTGCAGCTTTGTTACCAGTGGTGGCATTGGTAGTAAGTTTGCTGTGAGGGCTAATGCAGGGCCTCGCGG CTTTGCTACTCGTCGTGACGAGCCAATGCTAGCTGGTTTGGAGCAAGGGAATTCTGTTAGGGATGGTGATGGTGATGCTG CTGTGGTTAAGGTGGATGATGGATCACTGAGTGGAAGCCCTACTGAGCCTGCTAGCTTCGGTGATCAGCGTTTGTTGTCG CAGAAACTTGTTGTTGCTGTTGATGTTGATGAGGTATTAGGAAATTTCGTGTCGGCACTCAACAAGTTCATTGCAGATCG ATATTCATCAAATCATTCACTTTCTGAATATCATGTGTACGAGTTCTTTAAGATATGGAACTGCTCACGCGATGAAGCTG ATATTCGTGTTCATGAGTTTTTCAAGACACCATACTTCAAATCAGGGATCCACCCTCTCCCAGGTGCTAAGACAGCACTT CAAAAGTTATCAAGATTTTGTAGCCTCTCAGTTGTAACGTCTCGGCAGAATGTAATTAAGGACCACACAATTGAATGGAT AGAGAAGAATTATCCAGGACTCTTTCATGAGATTCACTTTGGTAACCACTTTGCACTTGATGGGTTGTCAAGACCAAAGT CAGAGATTTGTAGGTCTTTAAATGCCAAGGTTCTTATTGACGATAACCCAAGGTATGCCACAGAGTGTGCTGAAGCTGGA ATTGAAGTCCTACTATTTGATTATGAAAACTCATATCCTTGGAGCAAGAATGAAGCTGTTGACAAGCACCCCTTGGTGAC CAAAGTTAAGAACTGGGAAGAAGTGGAACAACAATTGATGTCAGTGATGGCAAGGATTTGTTGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0318700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSRFKNSEALVVVARFALHQPNLHIPMANLMGFDPCFRLNRAFSQYPALPAADRGTYISSPFLRNLACANVFGGKRSVGL GPKGCSFVTSGGIGSKFAVRANAGPRGFATRRDEPMLAGLEQGNSVRDGDGDAAVVKVDDGSLSGSPTEPASFGDQRLLS QKLVVAVDVDEVLGNFVSALNKFIADRYSSNHSLSEYHVYEFFKIWNCSRDEADIRVHEFFKTPYFKSGIHPLPGAKTAL QKLSRFCSLSVVTSRQNVIKDHTIEWIEKNYPGLFHEIHFGNHFALDGLSRPKSEICRSLNAKVLIDDNPRYATECAEAG IEVLLFDYENSYPWSKNEAVDKHPLVTKVKNWEEVEQQLMSVMARIC
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR35134:SF4
27 364 338 2.6E-147 –
PANTHER
PTHR35134
27 364 338 2.6E-147 –
SUPERFAMILY
SSF56784
159 360 202 6.38E-14
IPR036412
Pfam
PF06941
163 364 202 2.6E-13
IPR010708
Gene3D
G3DSA:3.40.50.1000
165 352 188 1.6E-9
IPR023214
Gene3D
G3DSA:1.10.40.40
176 228 53 1.6E-9 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008253
Molecular function 5'-nucleotidase activity Catalysis of the reaction: a 5'-ribonucleotide + H2O = a ribonucleoside + phosphate.
Subterm of
GO:0009264
Biological process Deoxyribonucleotide catabolic process The chemical reactions and pathways resulting in the breakdown of a deoxyribonucleotide, a compound consisting of deoxyribonucleoside (a base linked to a deoxyribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0318700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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