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LotjaGi4g1v0319400.1

Overview

Field Value
Gene ID LotjaGi4g1v0319400
Transcript ID LotjaGi4g1v0319400.1
Lotus japonicus genome version Gifu v1.2
Description Plant invertase/pectin methylesterase inhibitor; TAIR: AT1G70720.2 Plant invertase/pectin methylesterase inhibitor superfamily protein; Swiss-Prot: sp|Q8GT41|PLA1_PLAAC Putative invertase inhibitor; TrEMBL-Plants: tr|I3SW01|I3SW01_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0319400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:69696959..69697801) extracted from Lotus japonicus Gifu genome v1.2.

ATTTTTTCTGTATCTAAAATCTATTAGTCTAGCTTCAACCTTATTATATAACACCCTCACAGCCCCTAAACAACAAGAAG CAGAGATGGCATCAAGAAAAGCCTTGAACCAGTTTCTGATTCTGCCAGTCTTGCTGATAACTTGCTTTATTTTTCTGGGG CAATGTGCTAGGCTGCAGAACACAGAAGAGGGAGAGGATTTGGTCACTGCAACCTGCAAGCACACCCTTCATTTTAAAGT GTGTGTATCTTCCTTGAGATCAGTTCCTAGTAGCAAGAGTTCAGATCTCAAAAAGCTGGCTGAGATTGCATTGAATCTGA GCTCAAATTATGCTGCAAAGACATTGTCCTATGTGTGTAAGCTGAAATCTTCTACTGCTAATGTCACCAACAGTAACAGG TACATGTCTCGTTGCTTAAGTGATTGCATAGAGGAATACAAAGAAGCCAGAGAGAATTTGCAGGACTCAGCAGAAGCATT TGCAGAAGGAGATTATGACCAGGTAGATACATTGGTGTCTGCTGCTATGTCAGATGCTGAGACATGTGAGGATGGATTCA AGGAGGTGTTCATTGATGATGGCAATAAGGATTATTCCAATCCTTCTCTTACTAAGAGAAACAGTTACTTCTTTGAACTG TGTAGTAATGCTCTGGCCATTACAAAATTATTAGTTTGAGTGCATGCAAAATTATTGGAACATGGTGGGGCACAAATGAG TTGTTATAGCTGATAGGTTACCTGTTGAAATGTGCATTCAGTAATGTCTTCCATACATTCATGTTTTTAGTTGAAACATT GTGGCCAGATTGAATTAATGCTTAAAGTGGTGATTTCTCTTAT
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0319400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCATCAAGAAAAGCCTTGAACCAGTTTCTGATTCTGCCAGTCTTGCTGATAACTTGCTTTATTTTTCTGGGGCAATG TGCTAGGCTGCAGAACACAGAAGAGGGAGAGGATTTGGTCACTGCAACCTGCAAGCACACCCTTCATTTTAAAGTGTGTG TATCTTCCTTGAGATCAGTTCCTAGTAGCAAGAGTTCAGATCTCAAAAAGCTGGCTGAGATTGCATTGAATCTGAGCTCA AATTATGCTGCAAAGACATTGTCCTATGTGTGTAAGCTGAAATCTTCTACTGCTAATGTCACCAACAGTAACAGGTACAT GTCTCGTTGCTTAAGTGATTGCATAGAGGAATACAAAGAAGCCAGAGAGAATTTGCAGGACTCAGCAGAAGCATTTGCAG AAGGAGATTATGACCAGGTAGATACATTGGTGTCTGCTGCTATGTCAGATGCTGAGACATGTGAGGATGGATTCAAGGAG GTGTTCATTGATGATGGCAATAAGGATTATTCCAATCCTTCTCTTACTAAGAGAAACAGTTACTTCTTTGAACTGTGTAG TAATGCTCTGGCCATTACAAAATTATTAGTTTGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0319400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASRKALNQFLILPVLLITCFIFLGQCARLQNTEEGEDLVTATCKHTLHFKVCVSSLRSVPSSKSSDLKKLAEIALNLSS NYAAKTLSYVCKLKSSTANVTNSNRYMSRCLSDCIEEYKEARENLQDSAEAFAEGDYDQVDTLVSAAMSDAETCEDGFKE VFIDDGNKDYSNPSLTKRNSYFFELCSNALAITKLLV
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
SIGNAL_PEPTIDE
1 27 27 - –
SignalP_EUK
SignalP-noTM
1 27 27 - –
Phobius
SIGNAL_PEPTIDE_N_REGION
1 9 9 - –
TMHMM
TMhelix
7 26 20 - –
PANTHER
PTHR31080:SF77
7 193 187 2.7E-39 –
PANTHER
PTHR31080
7 193 187 2.7E-39 –
Phobius
SIGNAL_PEPTIDE_H_REGION
10 22 13 - –
TIGRFAM
TIGR01614
16 196 181 3.2E-37
IPR006501
Phobius
SIGNAL_PEPTIDE_C_REGION
23 27 5 - –
Phobius
NON_CYTOPLASMIC_DOMAIN
28 197 170 - –
SMART
SM00856
35 192 158 1.8E-35
IPR006501
Gene3D
G3DSA:1.20.140.40
36 197 162 2.2E-41
IPR035513
Pfam
PF04043
38 192 155 6.0E-35
IPR006501
SUPERFAMILY
SSF101148
38 196 159 2.75E-36
IPR035513
CDD
cd15801
39 196 158 2.38048E-56 –
Coils
Coil
111 135 25 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004857
Molecular function Enzyme inhibitor activity Binds to and stops, prevents or reduces the activity of an enzyme.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0319400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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