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LotjaGi4g1v0322000.1

Overview

Field Value
Gene ID LotjaGi4g1v0322000
Transcript ID LotjaGi4g1v0322000.1
Lotus japonicus genome version Gifu v1.2
Description Ethylene-responsive transcription factor; TAIR: AT1G19210.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q84QC2|ERF17_ARATH Ethylene-responsive transcription factor ERF017; TrEMBL-Plants: tr|A0A1J7I0J5|A0A1J7I0J5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0322000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:70037202..70038360) extracted from Lotus japonicus Gifu genome v1.2.

CCGCGAGTCAAACTTGTTCACTCGCCATTGTAATCAACACTCACCTTGTACGGTCAAACTCACTCTCACACTCTCCCACA TATATATACAGCCGCAACAACACAAACACAACAACACAAACCACAATCACCACCTGAACTGAACATTCTTTCACTAATCA AATCAACAACAACAACATTCTCATTCCATCCATTTGTTGCTACCTTTGACTGTGACAACATTCATTCAACAAACTACAAC ATAAACAACAAAAATGGTGAAGCAGAGCATGGTTAAGGTTGAGGAGAAACATGATTCTTCTTCCATTTACAGAGGTGTTA GAAAGAGGAAGTGGGGTAAATATGTCTCTGAAATCAGATTACCCAACAGCCGCCAGAGAATCTGGCTCGGGTCTTACGAT TCTGCTGAGAAGGCGGCGCGTGCATTCGACGCTGCCATGTTCTGTTTACGCGGCCGCAGCGGGAGGTTCAATTTCCCGGA CAACCCGCCAGACATCGCCGGCGGGAGGTCTATGACGCCGCCTCAGATTCAAGCCGCCGCCGCCCATTTCGCCAACACGG AGTCGGGCCAAGACAGCCGTGACACTCACCCGGGTCGACCCGAACCAGCTGAATCGGGTGTGGTTTCTTCTTCTTCGGAG GGAACGGCGTTGGTGGGTATGGAGGAGTCTCCGTCGCCTTGTGTTTCTGAGGTGACGGTTCAAACGGACAGTGACGGCGG CGTGAACAACGGGTTGCTGCCGGATTTGTTTGCGCCGATCGGGTCGGGTGATTTTGGATCGGGTTATGGGCTTTTTCCTG GGTTTGATGAATTTAGCGGCGATTTTTATGTGCCGGAATTGGAGAGCCTTAACTATTGTGAAGAAGAAAACACGGATGGG TACATAATCGAGGACTCTTTTTTGTGGAATTTCTGATGATGATGAGTATAGGAACAGGGTCGGGTTAAGTAGTGGAGCTC CGATTAACTGGTAAAGCGGGTCACAGTTGCGGATTTTTTTTTTTATTTGTTTATCATTGTCAGAACTGTGAGAATGATGT TGGTTTGGTAATTTTTTGAAACCAAACTGCTGTTTATATGCCGATTGTGATCAATGCAATGATAGTTGTAAAGTTCTCAA TTCATATTATCATAATTTTTTGATTCATTCTACAAGTAA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0322000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTGAAGCAGAGCATGGTTAAGGTTGAGGAGAAACATGATTCTTCTTCCATTTACAGAGGTGTTAGAAAGAGGAAGTG GGGTAAATATGTCTCTGAAATCAGATTACCCAACAGCCGCCAGAGAATCTGGCTCGGGTCTTACGATTCTGCTGAGAAGG CGGCGCGTGCATTCGACGCTGCCATGTTCTGTTTACGCGGCCGCAGCGGGAGGTTCAATTTCCCGGACAACCCGCCAGAC ATCGCCGGCGGGAGGTCTATGACGCCGCCTCAGATTCAAGCCGCCGCCGCCCATTTCGCCAACACGGAGTCGGGCCAAGA CAGCCGTGACACTCACCCGGGTCGACCCGAACCAGCTGAATCGGGTGTGGTTTCTTCTTCTTCGGAGGGAACGGCGTTGG TGGGTATGGAGGAGTCTCCGTCGCCTTGTGTTTCTGAGGTGACGGTTCAAACGGACAGTGACGGCGGCGTGAACAACGGG TTGCTGCCGGATTTGTTTGCGCCGATCGGGTCGGGTGATTTTGGATCGGGTTATGGGCTTTTTCCTGGGTTTGATGAATT TAGCGGCGATTTTTATGTGCCGGAATTGGAGAGCCTTAACTATTGTGAAGAAGAAAACACGGATGGGTACATAATCGAGG ACTCTTTTTTGTGGAATTTCTGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0322000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVKQSMVKVEEKHDSSSIYRGVRKRKWGKYVSEIRLPNSRQRIWLGSYDSAEKAARAFDAAMFCLRGRSGRFNFPDNPPD IAGGRSMTPPQIQAAAAHFANTESGQDSRDTHPGRPEPAESGVVSSSSEGTALVGMEESPSPCVSEVTVQTDSDGGVNNG LLPDLFAPIGSGDFGSGYGLFPGFDEFSGDFYVPELESLNYCEEENTDGYIIEDSFLWNF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31985:SF119
6 220 215 2.1E-74 –
PANTHER
PTHR31985
6 220 215 2.1E-74 –
SUPERFAMILY
SSF54171
17 76 60 4.51E-20
IPR016177
CDD
cd00018
17 77 61 3.13145E-31
IPR001471
Pfam
PF00847
17 67 51 2.2E-10
IPR001471
ProSiteProfiles
PS51032
18 75 58 21.259
IPR001471
Gene3D
G3DSA:3.30.730.10
18 77 60 3.1E-26
IPR036955
SMART
SM00380
18 81 64 5.1E-32
IPR001471
PRINTS
PR00367
19 30 12 2.5E-9
IPR001471
PRINTS
PR00367
41 57 17 2.5E-9
IPR001471
MobiDBLite
mobidb-lite
97 140 44 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0322000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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