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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0322400 |
| Transcript ID | LotjaGi4g1v0322400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF581 family protein; TAIR: AT5G20700.1 senescence-associated family protein, putative (DUF581); Swiss-Prot: sp|Q8LGS1|MARD1_ARATH Protein MARD1; TrEMBL-Plants: tr|I3SYU7|I3SYU7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0322400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:70074164..70076740) extracted from Lotus japonicus Gifu genome v1.2.
TCACCCATAAAATTCCAAACAAAACCAGGGGCTTAGCCCAACTACTCCATGAATTAAAATTAACATTGCTTTATGGTTTT GGTCTTATAAAGACACCCACATCCCTCACCTTTCTATTCTCCATTAGACACTCTTACCCAACACAACACCCATCCTCTCT TTTATATTCCCCTCTCATCATGTTGAGTAAGAGACCACCACCCATCATCGGAAAGTTATCGGAGCTACTAGTCTCCGGCG GCCGCGCGGTGGCGCTGTTAGAAAGCCCAAGAACCCCGTTAGACACCAAGATGGTGCCACCATCACCAAGAGGGTTGAAA AGCTACGACCTCGGTGGTGTTGGCCTCAAAATCGTGGTGGATCTTGATAAATCCTGTGAAGTGAGACGCGAGGTTTTGCC CAAACATGCCGTTTGCAGCTCCAATATGAACCGATCGGGTCCGATTCCGGTGAAGAAAAACTCAGATGCTAGATACGAAA TCGATGATCAGGGAAGCTTGGAAGAAGAGTTTACCTATGTCACATGCCATGTACCTAACAAAACGTTCACCAAGGTTTAC TATGATGGTGGTGAAGGTGATTTTGGTAAGAAGAACGGTAAAGTTGGTGTTCTTAGAAGAACCCCACCTCAAAATTTTGA GCCTGAACCATTGTTTCCCACCTCGAATTTTCTCAGTTCATGTAATCTATGTGGGAAGAAGCTTCATGGCAAGGATATAT ACATGTACAGGTATTGATTAATCTACTAAGAAACTGTTCTTTTTTCCTTGTTTGTATAGTATAATTGATTTTGAAACCAA TAGCGCTATAGCCTAGCGCCCTAGGGTTCACCGCTATAGCGCTTAAATTAGTGTTTTTTGGGCTTGGCGCTACGCGACGC TATTCACCATTAACAACCCCTGGTACTGATGATGATTTTGTTGTGGTGTTTGCAGAGGAGAGAAAGGATTTTGCAGCCAA GAGTGTCGATCAAGTCAGATAATGATGGATGAACGCAAAGAGGTGTGTAGATCAGAAGCATCCGTGGAATTGTCAAGTTC ACCTTATACAACAAGGGAACAGATATTTTCAACTGGGATTCTGGCACTTTAGATAATTTTGAGGGGTTTGGAATTAATCT GAGTCTGGCTGAGGAAGTTAATAATCCAGGGACTGATGAAGTGATGATCTATCTAGTAATAATTTATATACCTACTAAGT ACATAATATAATACGGCTATACTATTATTAACTATCTGGAATAATTGATAGTTAAGGTAGCTTGATCGTAACTGAGAAAA AATTTTGATCTGAGAAAGAAAGGGGGGGTAGATATTCTGATGTATTATTTATTATCCTGTTACCAAGATGGAAAGAACTA TGAACTTGAGATCTCAATTGCACAGATTTTTGTTTATTTCTTCTGTTTCTCAGTTTCTGTCTCAAGCATATAATCTAATT CAGGCTAACAGATCCTTTCCAATCTCATTTTCTTTGGTTAAAAATAGAGTTTTGGTCTATCTAACTTCTATTTTTAATTC GATTCTCACCATCTATGGTTGATACAATATCTTCAATCTGAATCATGACATGTTTAAGTATAAAAATGAAAAAATCAAAC TAAGAAGGAAAAAAAGAGGGACATGTATAAAAATCAAGAAATAGATTTATTGTACTTCACAATAATTTTATTATTTACAA TGAAAAATATAACAAGGACGGAATTAAAAACATTTTACACTTTTTTCATTGGGTTCCCTGCCCTGTTTTGTTTTCTTGTG AATTTGTGCACAAACAAGCCATTAACTCATCTAAGATGACTTATGCGTGTTTGTATTTGTGCGTATTTGTATTTATGTTC AAGTCAGCTGAAAATTCACGTATTTGTGCGTGTTTGTATTTTTGTTTAAGTCGGCTGGAAATTTATTCACTATAATGATA CAAGAGATGTGAATTGATCAAATGACATTTAAATTGCATTAGAATATACATTTTGACAAAAATACAAACACACCCAACGA GAGCAGAGAACTTGAGAGGTAAAAGTGGGTGCATGAATTGGGAGCTTTTGATGAACAGAAGAAGAAGCTGTCTCATAAAT GTGTTATTTCGTCGTTAGAGTGGATGCCATTCATGGGGGACCCTGGGAGGGACCTTTTGAAAATGAAGAACCCACCACTG GAATGAATATGACAAGGGAATCCAACTATCACCCATCCCCACTATGAAAAAAGTGAAAAAGAAAGAAAAAAATCATGAAA CAAACTACGGTCTTAAAGAAAATCATATCATGATTTTCCTGGCTACTTTTATGTATGGGAACCTCTTTTATTATTCGAGG CATATGCCCCACTAGCAAATTATATTTCTCCACCCAAATTTTCCCTGAAAACGAACATCATTGTGCTCCCTGCTCTTGAG TGTGGAAAGTGATTTATCGATATGGATACATAAGTTACTTTTGCAAGCTTTGTATGTGTTGTTATATGGCTGAATTTCAA TCTAAGAGATTCTTCAGACATGTGATAATTTCATGCGGTTAGTTCATGGAGCAAAACTTTCTTGTGCACACAATCTTACA TAATTTGTATGTAAGTT
CDS sequence (LotjaGi4g1v0322400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGAGTAAGAGACCACCACCCATCATCGGAAAGTTATCGGAGCTACTAGTCTCCGGCGGCCGCGCGGTGGCGCTGTT AGAAAGCCCAAGAACCCCGTTAGACACCAAGATGGTGCCACCATCACCAAGAGGGTTGAAAAGCTACGACCTCGGTGGTG TTGGCCTCAAAATCGTGGTGGATCTTGATAAATCCTGTGAAGTGAGACGCGAGGTTTTGCCCAAACATGCCGTTTGCAGC TCCAATATGAACCGATCGGGTCCGATTCCGGTGAAGAAAAACTCAGATGCTAGATACGAAATCGATGATCAGGGAAGCTT GGAAGAAGAGTTTACCTATGTCACATGCCATGTACCTAACAAAACGTTCACCAAGGTTTACTATGATGGTGGTGAAGGTG ATTTTGGTAAGAAGAACGGTAAAGTTGGTGTTCTTAGAAGAACCCCACCTCAAAATTTTGAGCCTGAACCATTGTTTCCC ACCTCGAATTTTCTCAGTTCATGTAATCTATGTGGGAAGAAGCTTCATGGCAAGGATATATACATGTACAGAGGAGAGAA AGGATTTTGCAGCCAAGAGTGTCGATCAAGTCAGATAATGATGGATGAACGCAAAGAGGTGTGTAGATCAGAAGCATCCG TGGAATTGTCAAGTTCACCTTATACAACAAGGGAACAGATATTTTCAACTGGGATTCTGGCACTTTAG
Protein sequence (LotjaGi4g1v0322400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLSKRPPPIIGKLSELLVSGGRAVALLESPRTPLDTKMVPPSPRGLKSYDLGGVGLKIVVDLDKSCEVRREVLPKHAVCS SNMNRSGPIPVKKNSDARYEIDDQGSLEEEFTYVTCHVPNKTFTKVYYDGGEGDFGKKNGKVGVLRRTPPQNFEPEPLFP TSNFLSSCNLCGKKLHGKDIYMYRGEKGFCSQECRSSQIMMDERKEVCRSEASVELSSSPYTTREQIFSTGILAL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 234 | 234 | 7.4E-89 | – | |
| PANTHER | 1 | 234 | 234 | 7.4E-89 | – | |
| Pfam | 159 | 205 | 47 | 3.8E-23 | ||
| ProSiteProfiles | 163 | 206 | 44 | 24.225 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0322400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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