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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0323100 |
| Transcript ID | LotjaGi4g1v0323100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RmlC-like jelly roll fold; TAIR: AT1G19130.1 RmlC-like jelly roll fold protein; Swiss-Prot: sp|Q9KSD1|MGLA_VIBCH Galactose/methyl galactoside import ATP-binding protein MglA; TrEMBL-Plants: tr|G7JT65|G7JT65_MEDTR Cupin family protein; Found in the gene: LotjaGi4g1v0323100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:70111828..70115971) extracted from Lotus japonicus Gifu genome v1.2.
CTTATATAATAAATTTGAACCCTCGATTATGAGTTTCATGAAGGCACATCATTTATTTTTTCTTATGAAGTCATGTGACA TGAACTTTTTTTTGGTTTCGTATCTCCACAGCTTATAGCTAAGAGATTAATTCCCTCGATACTCAGAGATTACATAAGTG AGTTTTAAAATGTCGGCATATTAAAAACATTATCCTCTGTGAAGTGAAGAAATTTCCCCCTTTTACTTTTCAACTGTGAC GGAAAGTAAGAGCGATATCAATGAGGTTGTTGGGCGTTGATGTTGTCATTGCACCTTCAGATTCATTCATTCATTCCACA TTCAGCAGAAGCATGTCTTTGTCGGCATCGGAGATCGCTGCGAAGCTGAATCTGCAACCTCACCCTGAAGGTGGCTTCTA CGCCGAGACCTTCCGCGACCACTCCGTTCATCTCTCCACTTCCCACCTTCCTCCCCAATACAAAGTCGATCGCCCCGTTT CCACCGCCATCTACTTCCTCCTTTCTTCCGGCAACCTCTCCCGCCTCCACCGCATCCCCTGCGCTGAAACCTGGCACCAC TACATCGGAGAATCCATCACCGTAGTGGAACTCAATGAGCAAGATTCCACTGTCAAGTTCACCCGCCTTGGATCCGATCT CGCTGACAATCAAACACCGCAGTACTCTGTGCCTCCCAATATCTGGTTTGGTTCATTTCCAACTAAGGATTTCACCATCT CTGCAGATGGAGGAGGGTTTGTCAATACCCCACCAAGAGATGCTGAAACTCACTACTCTCTTGTGGGGTGTACTTGTGCT CCTGGGTTTCAGTTCAATGACTTTGAGCTTGCTAAACGTTCTGAACTTGTTTCAAGGTTTCCCCAATTGGAGGCTCTCAT CACTGCTCTCACTTTTCCAGAGTAACCACCCTTTTCCTCTCTTGCTGTTATGATTCAAGTTTGTAATATTACTACTACTT GCTTGCCATTTGCCAAAATGTTCTGTTGATCAGTGCTTACTATGAATAATGTAACCTTTACTTATTGGCATGTTTTCATT GTATTTAGTACTACTTTTTGAGGATCAAATAATGAATGTAGCTTTAGCATGATTGGAGAAAACCCTGTTCCTTTGCATGT TTAGATTTAGCAACACCCTTAAAATGACAAATCACTAGGAAACTAAGAAAACAAAAATTTATAGGAACAGTGAGAAGGAC GTTTATGATTGGAAATTTTGGACATAGCGCACTATACTATACAGATTACAACACACCACACTCAAACACTTAGTAGTGTC CAAGCATTCACTGTTCCGTGTGCTGGATACATTGTTGGGTAAATCACTATCTGGATAATTGCTTTTTGCAGAAAGTTTCC AGAAACTACCTTCCAAAATTGCACTCCTATTCAAGGACCACATTGTCTTCTTTCTCTTTTCTTTCCCCTGGCACTTTACT CTAGTCTCTAGGCTCTAGCCAAAATATCCTATAGTGTATGAAGCTTGAATGAATAAGCATCGCCACGGTTTGTTCCCCCA CATTCATGTGGTTCCCAATGCTAAGCAAAACCTCTGCAAGCTTGAAGAACTCTGTTCTGTTTCTTTGGATAGGAATACAG ATTGGAGAACTAGAATTACAATGAAATCTGACTAGCCAACTTGTCATGAACCACCATAGACTGTATGTTAAACCAAGTAG CTAGGTTACTGAGTTAATATACAAAGTTTTGATTTACATTGTGCAGGTATGATTATGAAGTTGTCTAGTTCTTACCACAA AGTTTTCATGTGTCTGAAGTCTGTTGTAATGGAAATATCACATTGCTTGAAGGAGTTAAATTCTTTTTGGAATTCTAAAA TTCTAAGTATATCAATATTATCTCTCCTTGAGATCACTCTAAACTTCTGTAGTCTCCATCTTTAACACACTTTGTGCAAT TGCTAGATCAATCAATTGACAAATTTAAGAATTAAGAAAGCACCATGGTCATGGCTTGGGTAAAGTTCCATTCACCCACC CTAGGTTGCATATACAGAGCCAACCACGTGTGGCTTGGCTAATGTTCCATTCATAAAGTACAATTTATTTTTTCATATCT AAGGTTCAAGTTCATGGCTCGGGCCCTTGAGTGATAGTTATCTCCAATCAGAGGAGCTGAAACTAATGTACCACTAGAAT TCTCATTTGGGTGCATATAATAAGCATTGCTAGGGGTCAATTACTAGAATTCTCGACTAAAGAATATTCATTAGAGGAAG GGAGATAAACCAAGAAGCAAGCAAATCTAACTTTATAATTTATTGTAATTTTGTATATTTAGTTTTTTGTAAAGTACAAC TTCATATTATGAAGGAGAAATACATATATTTATAAGATTTTAGATCAAGCATGTAGAGTGTGATGAACCAGCTATCCAAA AGTTTAAGCTGATTGAACTCCACACCACATGATCACATAGGCTCTAGACCACTTGATTATGATTTGATTTCATGTTATCA ACCAACTATCCAAAAAACATAAGTTGTAAAGTAAAGACACATGAATGATTTTATATTATATTTGTAACATACACACCATG CTACACAACACAAACCGAAATGAGTGGCAGACATACACTTTTCAGTAACATTCAATCGACACACACTTTTCAACCACCGC TAAAATTTGCGGTGGTTATAAGCTACTATTAAAGTGTGTGTTGATTGAATGTCGACTGAAAATTTATGTTTATAATTACT CTAACAAATTCTAGCAGAAGGCCAGATATTGGTGCATTTATCAGTTTATTAGAAATTACAAATTAAGCTAGATTAAGCAC TATGACATTCTTGTGCTAGAAAGGTTATAGACTGCTTTCCCGATTCATCCTCTGGTTGACAAGAATGATGTAGATGAACA AAGTTGAAATTCCTTGCTGTTTGCAGATAGTAACTTTTCTATGAACAAATTTAACTGATGAGAAGAAACTGTTTATATCT CAAGAACGATATCTGCAGCCAGAAAATTGATATGATAACCAAATTAGCTTTGATTCAATTTGTTCCTAGCCTTCTAATAA CTCAGGGAACATTTAGCAGTAATTGAGCACTACTGTCATATATCAAATTCTGATTAACTAAATGAAAAACCATTTCATTA GAACTTACATTCTGAATCTGTGTTGTCCCATTTACTTCCACTGTCTGCATCTGAAGTCAGATCATCTTCACCATTGTCGG ACTTGGGTGCATGTTTGTTTTCCAAGCACTTCTTCATAGGAATTGATGAACTTGAACCATGACGATATAACTTTTTGTGG AGTCTTGCCCTTAAAATCTATAATGAAAAGCAAACCAAAAGTAGCTTAAGATAGTCCCAATTAAAGTAACTTATGAAGGA GAAAAACTGGTTTGCATGATTTGATTTCTCATCTACCTTTTCCATTGTCGATTGTGTGGAGAGAAGATCACTGAAACTGG GAGCTGTAGGTGGAAATCCACTTCTACAGACAAACATCTTCTTAAGAAGAAAAACAAGTGATTTCCTTCCATTGACACTC GCACTCTTATCCAAACAGCGAATCACACTGCTGTTTGGGTAGAAATTTCCAGCCTTGCTGCTATTGTCACCATCAGAAAA TGTCTCAGTTTCTTTACCTTCAACTTGCAAGCTTGAATGTTGACTGTTCAAACGTTGTTTCTTATCTATGTTGTCTTCTT TCTGTTCTGTGATGACCCCATTTGATTCCACTACCAGCTGTTCCCGGAAATAAATGTTGAGTTCATTATTTTGATCATGA TTTCCAGCTGCATCAAGTGTGATGAACTCTTGCACACAATCATCGTCTTGTGATGAATCTTGTGAAGTACTTGTATTACT GCTATGATGATCCAAATCCCCTTTCAAATTATCATTCCCAAGTGTCCCAATTACAAGGAGTGCTTGAGGCCAGTCATTGA ACTCTTGTTTGCAAGTTTCATGTAACATGTAATCTATTGGAAAATTTTGGTCATTAAACTTACTGCGCGAGAAAAATGAG AATAGAGAGAAGTAATAGATGTAATGCCTGTTGTGATGGTATAAGAAATAAAATATAAAAAAAAAGGCGTATGTGTTTTT TTTTTAAAAACCACGTGTCTTCACTAAATTGATATACATGTTTAGTGGTAAAAATGTGTATGAG
CDS sequence (LotjaGi4g1v0323100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGTTGTTGGGCGTTGATGTTGTCATTGCACCTTCAGATTCATTCATTCATTCCACATTCAGCAGAAGCATGTCTTT GTCGGCATCGGAGATCGCTGCGAAGCTGAATCTGCAACCTCACCCTGAAGGTGGCTTCTACGCCGAGACCTTCCGCGACC ACTCCGTTCATCTCTCCACTTCCCACCTTCCTCCCCAATACAAAGTCGATCGCCCCGTTTCCACCGCCATCTACTTCCTC CTTTCTTCCGGCAACCTCTCCCGCCTCCACCGCATCCCCTGCGCTGAAACCTGGCACCACTACATCGGAGAATCCATCAC CGTAGTGGAACTCAATGAGCAAGATTCCACTGTCAAGTTCACCCGCCTTGGATCCGATCTCGCTGACAATCAAACACCGC AGTACTCTGTGCCTCCCAATATCTGGTTTGGTTCATTTCCAACTAAGGATTTCACCATCTCTGCAGATGGAGGAGGGTTT GTCAATACCCCACCAAGAGATGCTGAAACTCACTACTCTCTTGTGGGGTGTACTTGTGCTCCTGGGTTTCAGTTCAATGA CTTTGAGCTTGCTAAACGTTCTGAACTTGTTTCAAGGTTTCCCCAATTGGAGGCTCTCATCACTGCTCTCACTTTTCCAG AGTATGATTATGAAGTTGTCTAG
Protein sequence (LotjaGi4g1v0323100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRLLGVDVVIAPSDSFIHSTFSRSMSLSASEIAAKLNLQPHPEGGFYAETFRDHSVHLSTSHLPPQYKVDRPVSTAIYFL LSSGNLSRLHRIPCAETWHHYIGESITVVELNEQDSTVKFTRLGSDLADNQTPQYSVPPNIWFGSFPTKDFTISADGGGF VNTPPRDAETHYSLVGCTCAPGFQFNDFELAKRSELVSRFPQLEALITALTFPEYDYEVV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 17 | 212 | 196 | 2.4E-56 | ||
| Gene3D | 17 | 212 | 196 | 2.7E-54 | ||
| PANTHER | 25 | 213 | 189 | 8.0E-78 | – | |
| PANTHER | 25 | 213 | 189 | 8.0E-78 | ||
| Pfam | 31 | 190 | 160 | 7.4E-44 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0323100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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