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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0325300 |
| Transcript ID | LotjaGi4g1v0325300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | B3 domain-containing protein; TAIR: AT3G19184.2 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp|Q0JP99|Y1341_ORYSJ B3 domain-containing protein Os01g0234100; TrEMBL-Plants: tr|A0A0B2REX2|A0A0B2REX2_GLYSO B3 domain-containing protein; Found in the gene: LotjaGi4g1v0325300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:70352062..70357016) extracted from Lotus japonicus Gifu genome v1.2.
ATATCACTCGTTCTCTCATTTCATTCGCTCGAATCGCTCATACCCTTTACCTCTAGTTTTCGATTCGAGCCTCAAACCCT AGGTTTCATCTACAAATCCCTCTTTGAACTCAATCAATCCCTATGTGATATGGTAAAGCGACTGTCCTTGGTAGATCCTT CTCTATTTACAATAGTAATGTATCAATCTGTTCTTATCGCTATCGGTTTTTATGTTGTGTTCTTATGATTGTTTAGTGAT TCCCCATCCATTACCTAATGATGAGTCTTCTGTTTTTCAATACCGATTTAGTTTTTGGTACTTTTACTTCAATTCTGCGC TGAATCTGTGTTCTTCATTTTCAGGCAGTGAATCTGTGTTGATCAATTAAGGATCTCTCCCATTCATAAAAGATCTTGTT CATAAAGGTTCATTTTATTTTCCCCTTATTTTTCCCCAAATGAAATAATCAGCTGAACTTGACACAACTTTTTAGTCCCA CTATTTTTATATATGTTATGATGTTATTGATTAAAGGTGAGTTGTTAATAGCTTTGCATTACATAATATTTAGATCTATT TGTCCAACGTCACCCTTAGGATTCATGGGCTCAACATCCTCACCCATGGCACCTGTAATGGGCGTAACCTCTTGACTTTG ATGCTACTCTGTGTAGTATAAGGAAATAAGGTTGCAGACCAACAAATATAGTTTTTGGTCAAGTGGTGGACGCTTGCTCC AATAAATGGTATCATTGTGAGTTCATGAGTTCAAATCCCCGGCTAACATTGGTGGGAGATTGTTGGATACATTTTTCCAG CGTCACCCTTTGAACCGATCCAGTTTTGAATCTTTTGAATCAGCCGAGTAAAAACTCAGTTGGTGGGTAACCCCTCATCA GAGAGATCCCATAATTCTCCTACTCAAGAGTGGGCCTAACCCCTCCTTAGGGAGATTTTCGGATATATTTTTCCAGCATC ACCCTTTAAACCAGTCCAGCTCTGAACCCTTTGAATCAACCCAGTAAAAGCTCAGTTGGGGGTTATCCCTCCTCATGGAA ATCCCATAATTCTCCTACTCGGCAGTGGACCTAACTCTCCTCTGAGAGATTGTTGGATACATTTTTCCAGCGTCACCCTT TGAACCGGTCCAGTTTTGAATCTTTTGAATCAGCCCAGTAAAAGCTCAGTTGGTGGGTAACCCCTCATCAGAGAGATCCC ATAATTTTCCTACTCAGGAGTGGACCTAACCCATCCTTAGGGAGATTGTTGGATATATTTTTCCAGAGTCACCATTTGAA ACAGTCCAATTCTGAACCCTTTGAATCAGCCTAGTAAAAGCTCAGTTGGTAGGTAACCCCTCTTTAGGGAGATCCCATAG TGGACCTAGGCCCTCCTTAGGGAGTAGATCTTTGCTAGTCTCTTTAGTATGCCACTAGATTCTTACCCGCTAATCTAAAA GTGTTTTCTCTCTATCCTAATTCTTTTTAATTCCTAAACCAAAAAATCTCATTGGTTTCATTCTTTTTTATATTTTTTTT TCATTTATCATATCTCTTGATTGACAAGGGGAGTGGGGAAGACACGAAATCTCTGAAACAGTGATTGGATTGAAAGAAGC CACAATATTTGAAATTTGGCTCCATTTCACAGAAATATACTCTACATTTTTTCTCCTCTGCCACTTCCAGGTACACACTC TCTACTCACTGTGAAGAACAAAGGAGACAACCATGGTAGAAGCTGTACTTCAGACACCCAGCGACAGGGGAAACCCTTCA ACCATGGTTCTGTATTTTGCATTTAACATTGTAAATTTCTTGTCTTTTACCATCAAATGTCTCATTTGTTTGTGTGTTGA ACAGGGTACCAGTCGCAATGCGCAAAAAAAGTAAGTCAAGTTTCTTCCTTTCTTATTTGATTTCATCATGAATAGTAGAA AACAGTGACTCACTCAATGTTTTTACTTTCAATGCATAGACGAAAGAGTGGGGGCGAAAGCAGTGTCTGTAGTAGAACCA CCTTCAACAATGAAGCTCTGCTTGCTGCTGCTCTGGAACGTGCAAAAGAGCTTCAAGCTAGCTTATCTCCTGAATTCCCA AGCATTGTTAAGCACATGCTCCCATCTCATGTAACTGGAGGGTTTTGGCTTGTAAGATGATCTCACTTTGTTCATGCTTT TGCTTTTTAAGGGAAAACCACAGTGACCCAAAATCACGGTGGACAGAAGCAGTTTTTCTTAACTTAAAGTTTGTGTCTGT TGACTCTGATTTTAGCTTCATCATGATTTTGCATTGTGTATCTAAGTATGAGTATGCAGATATCTCACACTTTTCATGAT TGATATGTATTGTAAGTGTTTGTTTGGTTTTCAATTTGAAAGTGCTTTAACCCAACAGAGGTCCAAAGCTCTTTCACATT TGAGGCATTGAAATGTGTGATCTTGAAAGCGGACTACCAAACTGAAAACTAATCACAACCTAGGTACTAAGCAAATTTGG TCATTTGGGTAACTTTTTAAAAAATGTATTTATGCTGTGCTTGTGCCGTGCTTGTGCTTTTACAATTAGTCTTTTAGCTC TTCCCTGTTGCTATTTGTTTTGGGGTGGGGTGGTTCTCTCTTTGTCTTTGTGTTTTCTCTTTGGTTTCTTGTACTGTCGG TTGTAACACCCCCTAAGTGTTACTCCCTCCGTTTCTAAATATAAGACCTATTCCAAAAAATTGCGCTTATTAAGGAAGCA TTTAATGTGACTCATTATTGTATTGATTTTTTAAAAAAGCATACATTCTTCCTTATTTAACCTTTGTTATGCACTCACCA TTGATATCCCAAAAGTCATATTTAGTTGGATTAGTAGTAATTAATGGTAGGTGGTAACTTTGGAATTGAAAACATATAAT TAATGTGGAGGGTAAAAATGGAAGAGTACAAAACCTTTTGTTAGATTATTGTAACTAGGTCTTATATTTAGGAATTTCAA AATTTTGAAACTAGGTCTTATATTTAGGAACGGAGGGAGTACCATTCTTTTATTAATTTTGGCTTTCCAAAAAAAAAATT ATCTTGCTAGCATTTTTATTGTTTATATTATTACTATTACTCACTATGTTTTCTAATGTCAGGGTTTTCCAAAAAAATTC TGTGACTTGTATTTGCCTAAGGTTGATACTCTCATTGCTTTGGAAGATGAAAGTAGGGAGATATACCAAACCAAATACCT TGCTGAAAAGATGGGCTTGAGTGGTGGATGGAGGGGTTTTTCCATAGCTCACAACTTACTTGAGCTGGATGTTCTTGTTT TCCATTTGATCCAACCTCACAAGTTTAAGGTAAATGTTTGATCTTTCAAAGTAAATGATATGTACTTTATTTTGTCTGAT ATATGATCTCCTAGTTCTGCAAATTTATAATAATAGTTTTGGAAGTTGCAATCTTCAATATCTTGGATCTCCACAGGTGT ACATTGTAAGATCACAGAAGCCAGATGAGGTGGATGGTGCTCTTGGCCTGCTCAAGCTGGATAAGTGCAAAAAACCAAAG AATGAACTGGATATGGAAAGTATTGCTGGTAAGTGACGCATAACCCTTCTTGCTTATGTAACTTGTCTGTATTTTGAAGC AAATCAAGTAGGATAGCAATTGAGGCTCTTAAAAGAACAAATTATCTGTTTAAATTGATGGTGGGCTACACTTTCAACAT ATTTGAATCAGCTTCTCTTTATAATAAATTTTATGCCCAGAAGCTGCTGTTCTCTCCAAAATTGATTTGACTTGAGAATC ATTAGTAGAAAGATTTCCAAACATATTTTATAGTTTTGCCTCATAAGTGATTGTGGTGCTTCCAATTGCAGAACCAAACA CTAATAACGTGTTTGGTTTTCCATGCGGAATGCTGTAGAGTCAATTCTGGTTAACTTCTGACTAAATCGTGAAACCAAAT ATGCACTGAAAATTGTATAGATTTGCTATCTCATTTTTCAGGCGCTATTCAAGGAAGTGATCCAGAGAATAGGAGGGTGA TGTTGGTTTCTAACTCAACTCAAACTGAGCTGCTTGAACAGAAAAGTGAAGAAATAAGCCTAGAAGAAGCTACTAATGGG ATTAGATTAGCAGAATTTGATCTCAGGTTTGAAGAAGTGACTGGCATTGAGAATTTCAACATCATGATAAATCGCTGGGT TCTGGATTCAATGTTCACTGAACACCGTCGGGCCAAGTATTATGAGCTCTGTCGCAGCCAGAGATGTTTTCTTCATAAGA ACCTTCTTCCGGGTCTTAACTTCGACATGGTGGCTGGAATGATTAAGAAGACTATTGACATTGCTGAGGCCATTGAAGTT AGCAAGATCACAATCCCTGTGGACCATTTAGTTACATGGAACAAAATATTGAAAGGCTTAGAGTTCTTGGGGATGAATGT GAGATTTTTGCGGACTAGGCTTGACAAGCTGATGAAACTAGCCTTGAAACTGAAGAGGTACAAAGATGCAAGGCTTGAAC GTCTCCAAGCTAAGGAGGAGCTGGAAGCAATAGAAGAGATTGCTTCGGAAGTGAAAAAGACCATAAAGAAACTTGATGAA GAGATTGCAATGCAGGAGAGCCCTGAGAAGGTGGAGGCTATGTTTGAAGAACTGGCTAATGCTCCTTGGTGATGTTGTGT TGTGTCCTAGTACACTGCTGCTTCTCTTCTCAGCTTGGACATAAGTTTCAATATATGATATTATAGACAAAGAAAAAGAA ATATTTTTGTATTTTGGATTGGGAACATAAAAGAGCTTTGAACTTCCTTTACAACTAGACAATCGTTCTGTTATTTTGTG AAGCTATGACTTCTAAGTATCTTTTTGTATATTTTGTTACATCTGTGTACTGATGTGGATTTCAGGATTTGGGATTGTGA CTATTATTTATAAGTAGGGAAACTTTTCCTTCTTACATATTTTCAACTACATAAATATGTGGAACTCATTTCATT
CDS sequence (LotjaGi4g1v0325300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTAGAAGCTGTACTTCAGACACCCAGCGACAGGGGAAACCCTTCAACCATGGGTACCAGTCGCAATGCGCAAAAAAA ACGAAAGAGTGGGGGCGAAAGCAGTGTCTGTAGTAGAACCACCTTCAACAATGAAGCTCTGCTTGCTGCTGCTCTGGAAC GTGCAAAAGAGCTTCAAGCTAGCTTATCTCCTGAATTCCCAAGCATTGTTAAGCACATGCTCCCATCTCATGTAACTGGA GGGTTTTGGCTTGGTTTTCCAAAAAAATTCTGTGACTTGTATTTGCCTAAGGTTGATACTCTCATTGCTTTGGAAGATGA AAGTAGGGAGATATACCAAACCAAATACCTTGCTGAAAAGATGGGCTTGAGTGGTGGATGGAGGGGTTTTTCCATAGCTC ACAACTTACTTGAGCTGGATGTTCTTGTTTTCCATTTGATCCAACCTCACAAGTTTAAGGTGTACATTGTAAGATCACAG AAGCCAGATGAGGTGGATGGTGCTCTTGGCCTGCTCAAGCTGGATAAGTGCAAAAAACCAAAGAATGAACTGGATATGGA AAGTATTGCTGGCGCTATTCAAGGAAGTGATCCAGAGAATAGGAGGGTGATGTTGGTTTCTAACTCAACTCAAACTGAGC TGCTTGAACAGAAAAGTGAAGAAATAAGCCTAGAAGAAGCTACTAATGGGATTAGATTAGCAGAATTTGATCTCAGGTTT GAAGAAGTGACTGGCATTGAGAATTTCAACATCATGATAAATCGCTGGGTTCTGGATTCAATGTTCACTGAACACCGTCG GGCCAAGTATTATGAGCTCTGTCGCAGCCAGAGATGTTTTCTTCATAAGAACCTTCTTCCGGGTCTTAACTTCGACATGG TGGCTGGAATGATTAAGAAGACTATTGACATTGCTGAGGCCATTGAAGTTAGCAAGATCACAATCCCTGTGGACCATTTA GTTACATGGAACAAAATATTGAAAGGCTTAGAGTTCTTGGGGATGAATGTGAGATTTTTGCGGACTAGGCTTGACAAGCT GATGAAACTAGCCTTGAAACTGAAGAGGTACAAAGATGCAAGGCTTGAACGTCTCCAAGCTAAGGAGGAGCTGGAAGCAA TAGAAGAGATTGCTTCGGAAGTGAAAAAGACCATAAAGAAACTTGATGAAGAGATTGCAATGCAGGAGAGCCCTGAGAAG GTGGAGGCTATGTTTGAAGAACTGGCTAATGCTCCTTGGTGA
Protein sequence (LotjaGi4g1v0325300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVEAVLQTPSDRGNPSTMGTSRNAQKKRKSGGESSVCSRTTFNNEALLAAALERAKELQASLSPEFPSIVKHMLPSHVTG GFWLGFPKKFCDLYLPKVDTLIALEDESREIYQTKYLAEKMGLSGGWRGFSIAHNLLELDVLVFHLIQPHKFKVYIVRSQ KPDEVDGALGLLKLDKCKKPKNELDMESIAGAIQGSDPENRRVMLVSNSTQTELLEQKSEEISLEEATNGIRLAEFDLRF EEVTGIENFNIMINRWVLDSMFTEHRRAKYYELCRSQRCFLHKNLLPGLNFDMVAGMIKKTIDIAEAIEVSKITIPVDHL VTWNKILKGLEFLGMNVRFLRTRLDKLMKLALKLKRYKDARLERLQAKEELEAIEEIASEVKKTIKKLDEEIAMQESPEK VEAMFEELANAPW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 37 | 37 | - | – | |
| MobiDBLite | 9 | 25 | 17 | - | – | |
| PANTHER | 25 | 411 | 387 | 1.6E-130 | – | |
| PANTHER | 25 | 411 | 387 | 1.6E-130 | – | |
| Gene3D | 48 | 161 | 114 | 1.5E-22 | ||
| SUPERFAMILY | 62 | 159 | 98 | 1.96E-20 | ||
| CDD | 67 | 158 | 92 | 2.78028E-21 | ||
| ProSiteProfiles | 69 | 160 | 92 | 10.179 | ||
| SMART | 69 | 160 | 92 | 1.1E-16 | ||
| Pfam | 70 | 159 | 90 | 2.0E-11 | ||
| Coils | 357 | 391 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi4g1v0325300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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