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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0325300 |
| Transcript ID | LotjaGi4g1v0325300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | B3 domain-containing protein; TAIR: AT3G19184.1 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp|Q0JP99|Y1341_ORYSJ B3 domain-containing protein Os01g0234100; TrEMBL-Plants: tr|K7K5N2|K7K5N2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0325300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:70352101..70355057) extracted from Lotus japonicus Gifu genome v1.2.
ACGAAAGAGTGGGGGCGAAAGCAGTGTCTGTAGTAGAACCACCTTCAACAATGAAGCTCTGCTTGCTGCTGCTCTGGAAC GTGCAAAAGAGCTTCAAGCTAGCTTATCTCCTGAATTCCCAAGCATTGTTAAGCACATGCTCCCATCTCATGTAACTGGA GGGTTTTGGCTTGTAAGATGATCTCACTTTGTTCATGCTTTTGCTTTTTAAGGGAAAACCACAGTGACCCAAAATCACGG TGGACAGAAGCAGTTTTTCTTAACTTAAAGTTTGTGTCTGTTGACTCTGATTTTAGCTTCATCATGATTTTGCATTGTGT ATCTAAGTATGAGTATGCAGATATCTCACACTTTTCATGATTGATATGTATTGTAAGTGTTTGTTTGGTTTTCAATTTGA AAGTGCTTTAACCCAACAGAGGTCCAAAGCTCTTTCACATTTGAGGCATTGAAATGTGTGATCTTGAAAGCGGACTACCA AACTGAAAACTAATCACAACCTAGGTACTAAGCAAATTTGGTCATTTGGGTAACTTTTTAAAAAATGTATTTATGCTGTG CTTGTGCCGTGCTTGTGCTTTTACAATTAGTCTTTTAGCTCTTCCCTGTTGCTATTTGTTTTGGGGTGGGGTGGTTCTCT CTTTGTCTTTGTGTTTTCTCTTTGGTTTCTTGTACTGTCGGTTGTAACACCCCCTAAGTGTTACTCCCTCCGTTTCTAAA TATAAGACCTATTCCAAAAAATTGCGCTTATTAAGGAAGCATTTAATGTGACTCATTATTGTATTGATTTTTTAAAAAAG CATACATTCTTCCTTATTTAACCTTTGTTATGCACTCACCATTGATATCCCAAAAGTCATATTTAGTTGGATTAGTAGTA ATTAATGGTAGGTGGTAACTTTGGAATTGAAAACATATAATTAATGTGGAGGGTAAAAATGGAAGAGTACAAAACCTTTT GTTAGATTATTGTAACTAGGTCTTATATTTAGGAATTTCAAAATTTTGAAACTAGGTCTTATATTTAGGAACGGAGGGAG TACCATTCTTTTATTAATTTTGGCTTTCCAAAAAAAAAATTATCTTGCTAGCATTTTTATTGTTTATATTATTACTATTA CTCACTATGTTTTCTAATGTCAGGGTTTTCCAAAAAAATTCTGTGACTTGTATTTGCCTAAGGTTGATACTCTCATTGCT TTGGAAGATGAAAGTAGGGAGATATACCAAACCAAATACCTTGCTGAAAAGATGGGCTTGAGTGGTGGATGGAGGGGTTT TTCCATAGCTCACAACTTACTTGAGCTGGATGTTCTTGTTTTCCATTTGATCCAACCTCACAAGTTTAAGGTAAATGTTT GATCTTTCAAAGTAAATGATATGTACTTTATTTTGTCTGATATATGATCTCCTAGTTCTGCAAATTTATAATAATAGTTT TGGAAGTTGCAATCTTCAATATCTTGGATCTCCACAGGTGTACATTGTAAGATCACAGAAGCCAGATGAGGTGGATGGTG CTCTTGGCCTGCTCAAGCTGGATAAGTGCAAAAAACCAAAGAATGAACTGGATATGGAAAGTATTGCTGGTAAGTGACGC ATAACCCTTCTTGCTTATGTAACTTGTCTGTATTTTGAAGCAAATCAAGTAGGATAGCAATTGAGGCTCTTAAAAGAACA AATTATCTGTTTAAATTGATGGTGGGCTACACTTTCAACATATTTGAATCAGCTTCTCTTTATAATAAATTTTATGCCCA GAAGCTGCTGTTCTCTCCAAAATTGATTTGACTTGAGAATCATTAGTAGAAAGATTTCCAAACATATTTTATAGTTTTGC CTCATAAGTGATTGTGGTGCTTCCAATTGCAGAACCAAACACTAATAACGTGTTTGGTTTTCCATGCGGAATGCTGTAGA GTCAATTCTGGTTAACTTCTGACTAAATCGTGAAACCAAATATGCACTGAAAATTGTATAGATTTGCTATCTCATTTTTC AGGCGCTATTCAAGGAAGTGATCCAGAGAATAGGAGGGTGATGTTGGTTTCTAACTCAACTCAAACTGAGCTGCTTGAAC AGAAAAGTGAAGAAATAAGCCTAGAAGAAGCTACTAATGGGATTAGATTAGCAGAATTTGATCTCAGGTTTGAAGAAGTG ACTGGCATTGAGAATTTCAACATCATGATAAATCGCTGGGTTCTGGATTCAATGTTCACTGAACACCGTCGGGCCAAGTA TTATGAGCTCTGTCGCAGCCAGAGATGTTTTCTTCATAAGAACCTTCTTCCGGGTCTTAACTTCGACATGGTGGCTGGAA TGATTAAGAAGACTATTGACATTGCTGAGGCCATTGAAGTTAGCAAGATCACAATCCCTGTGGACCATTTAGTTACATGG AACAAAATATTGAAAGGCTTAGAGTTCTTGGGGATGAATGTGAGATTTTTGCGGACTAGGCTTGACAAGCTGATGAAACT AGCCTTGAAACTGAAGAGGTACAAAGATGCAAGGCTTGAACGTCTCCAAGCTAAGGAGGAGCTGGAAGCAATAGAAGAGA TTGCTTCGGAAGTGAAAAAGACCATAAAGAAACTTGATGAAGAGATTGCAATGCAGGAGAGCCCTGAGAAGGTGGAGGCT ATGTTTGAAGAACTGGCTAATGCTCCTTGGTGATGTTGTGTTGTGTCCTAGTACACTGCTGCTTCTCTTCTCAGCTTGGA CATAAGTTTCAATATATGATATTATAGACAAAGAAAAAGAAATATTTTTGTATTTTGGATTGGGAACATAAAAGAGCTTT GAACTTCCTTTACAACTAGACAATCGTTCTGTTATTTTGTGAAGCTATGACTTCTAAGTATCTTTTTGTATATTTTGTTA CATCTGTGTACTGATGTGGATTTCAGGATTTGGGATTGTGACTATTATTTATAAGTAGGGAAACTTTTCCTTCTTAC
CDS sequence (LotjaGi4g1v0325300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCCCATCTCATGTAACTGGAGGGTTTTGGCTTGGTTTTCCAAAAAAATTCTGTGACTTGTATTTGCCTAAGGTTGA TACTCTCATTGCTTTGGAAGATGAAAGTAGGGAGATATACCAAACCAAATACCTTGCTGAAAAGATGGGCTTGAGTGGTG GATGGAGGGGTTTTTCCATAGCTCACAACTTACTTGAGCTGGATGTTCTTGTTTTCCATTTGATCCAACCTCACAAGTTT AAGGTGTACATTGTAAGATCACAGAAGCCAGATGAGGTGGATGGTGCTCTTGGCCTGCTCAAGCTGGATAAGTGCAAAAA ACCAAAGAATGAACTGGATATGGAAAGTATTGCTGATTTGCTATCTCATTTTTCAGGCGCTATTCAAGGAAGTGATCCAG AGAATAGGAGGGTGATGTTGGTTTCTAACTCAACTCAAACTGAGCTGCTTGAACAGAAAAGTGAAGAAATAAGCCTAGAA GAAGCTACTAATGGGATTAGATTAGCAGAATTTGATCTCAGGTTTGAAGAAGTGACTGGCATTGAGAATTTCAACATCAT GATAAATCGCTGGGTTCTGGATTCAATGTTCACTGAACACCGTCGGGCCAAGTATTATGAGCTCTGTCGCAGCCAGAGAT GTTTTCTTCATAAGAACCTTCTTCCGGGTCTTAACTTCGACATGGTGGCTGGAATGATTAAGAAGACTATTGACATTGCT GAGGCCATTGAAGTTAGCAAGATCACAATCCCTGTGGACCATTTAGTTACATGGAACAAAATATTGAAAGGCTTAGAGTT CTTGGGGATGAATGTGAGATTTTTGCGGACTAGGCTTGACAAGCTGATGAAACTAGCCTTGAAACTGAAGAGGTACAAAG ATGCAAGGCTTGAACGTCTCCAAGCTAAGGAGGAGCTGGAAGCAATAGAAGAGATTGCTTCGGAAGTGAAAAAGACCATA AAGAAACTTGATGAAGAGATTGCAATGCAGGAGAGCCCTGAGAAGGTGGAGGCTATGTTTGAAGAACTGGCTAATGCTCC TTGGTGA
Protein sequence (LotjaGi4g1v0325300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLPSHVTGGFWLGFPKKFCDLYLPKVDTLIALEDESREIYQTKYLAEKMGLSGGWRGFSIAHNLLELDVLVFHLIQPHKF KVYIVRSQKPDEVDGALGLLKLDKCKKPKNELDMESIADLLSHFSGAIQGSDPENRRVMLVSNSTQTELLEQKSEEISLE EATNGIRLAEFDLRFEEVTGIENFNIMINRWVLDSMFTEHRRAKYYELCRSQRCFLHKNLLPGLNFDMVAGMIKKTIDIA EAIEVSKITIPVDHLVTWNKILKGLEFLGMNVRFLRTRLDKLMKLALKLKRYKDARLERLQAKEELEAIEEIASEVKKTI KKLDEEIAMQESPEKVEAMFEELANAPW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 346 | 346 | 3.3E-116 | – | |
| PANTHER | 1 | 346 | 346 | 3.3E-116 | – | |
| ProSiteProfiles | 1 | 88 | 88 | 10.405 | ||
| Pfam | 1 | 87 | 87 | 1.3E-10 | ||
| SMART | 1 | 88 | 88 | 3.8E-13 | ||
| CDD | 1 | 86 | 86 | 1.85859E-18 | ||
| SUPERFAMILY | 1 | 87 | 87 | 3.53E-17 | ||
| Gene3D | 1 | 89 | 89 | 3.8E-18 | ||
| Coils | 292 | 326 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi4g1v0325300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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