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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0326400 |
| Transcript ID | LotjaGi4g1v0326400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA-directed RNA polymerase III subunit RPC4; TAIR: AT5G09380.2 RNA polymerase III RPC4; Swiss-Prot: sp|Q5E9Z7|RPC4_BOVIN DNA-directed RNA polymerase III subunit RPC4; TrEMBL-Plants: tr|I1MSB8|I1MSB8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0326400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:70470563..70474593) extracted from Lotus japonicus Gifu genome v1.2.
AAAAGATACATATGAAAATTAGATTAGGGAAATGATAAATATTTTGAGATGAGATTATGTTAAGTGAGTAAGCTTTCTCA ATACACATTGTTCACGAATCGAACTCAAAAGAATCTAGCTGTCTATCAATTATGAGTAGGAATAGATCAGACCGTTCGTA GGAGTTTATGACCTAACCTACATCAAACACCTAGACCAATGGACAAGTCCTACACTTTTTTAAAAGGCTTGCCTTAAAAA AGGCTACAAGCCTTGTAAGGTACTAGTAACAATTGTGCTAATAACAACTTATTTTTATGATTCAGATTGAAAATAATAAT AAAGAATGCGTGATTTCAAAATTAATAAAAAAAAAAATGTGTGATACTAGGTTTTAGCCGTGAGTGAGATAGATACTGCC GCCTATTAGTTCCTCCTAAAACACCGTACCCTGTTCTCAAACAAACCAACTCTCAGCTTTTTTCATTTTACGGCAAACCT TCAAACCTTCTCTCAGATTACCAATACCAGGTACTCTCATTGCTTCTTTCAACTTTCACTTTGTCTCTTTCTCTTTGCCA TTCTTATTATCAAACCGATTCAACTTCAACTCTCTTTTATGCTAATACATATAACAGCACAGTTTACACTGCTATATCTC TAATGCTCGAATCGCCTGCACTTTCATGATCATCCATGTTTTTTTTTCTGTGTTTGTTTCTTAGATTGAAATCACTCTAA TGGATTTAGGATCATCCAAAGATGCTCCTGGCGGTGGTGGAAGAAGGAAGGTTTGTTTTCTGAATATTGCTAATACTTTG TATTTTGTCATAATATCAATTTACTCCCCTGTTTTTGTCTGGCCAATGATGAATGACCTGCATTACACTGCAGGTGAAGT TTGCACCAAGAGCACCGCCCCGTCGAGTGAAGAAAGAAGAAGTTAAATCGTATGAATCATTTGGTTTGATTCATACTACG TGTAATGTAATAGCTTTACTGCTGTTATATCTCATTATTAATGTTGTTCCATTTTTTTTGTTTCTGCAGTGAAGTTGTTG AGGATACTGATGCAAATGTGGCTAAGGATCTCCTCCGGCGTCTTAATGTATGTGTGATTTGTTTTTGATTCATACATGTT TTATTCACTTGTTCTCTAACTCAATTTTCCATTGTTAGGAATTTTCTTTATCATTCTGTCTGAATTTTTCTTTCATTTAC AGGAGGGTAAATTAAGGCACAAAGTTGAGAAAAAAGGTATATTAGCATGTTACTACTCCTTTTAGTATTGAATTTCTGTT ATCCAATTTTATGCGACTTTTTGCTTCCATCGTCTCAAGCCGTATTTCTTGATAATTTATCTGGGAAAATTTATAACTTA TATGGGAAGGGTCTACTTTTCTGATAAATCCTCAGAAAGCGAAGGTGCATAGAAATATTTCAGTCATTGACATAGTAAAC TGGATTTGCTGAGGAATTTATATCTTTGTATCTGATGGTGTTTGTTGAATAGAAAAGGGGAAATTAGGGAATATTTACTA AGATTATATTTCAGGCATTGCAGAACTAATGGAGAATCAAAGTAAATCTCATCTTAGGGAAATAGTTTCTGCTTTTTTAT TTTATGATAACATGGCATGCTTCATCTGAGAGCATGTTTAGATGTTCATCTTCATCATTGATTCTAGCAGCAAGATTAAT TGTTTAATGAAGCTAAAAATACTAGCTACTGTGGTGACTTAATCAATTATGGATCTCACAATTTGATTTTGTAACATTAC CCTATAGAACTAACTTTTATTATAAATGCATCAAAGTATTACCAATCAATTCTGATAATCGTGATCCAAACACACATGGG GATTAACATTTACTCACTTGAACATTTGTGCCATTCCTATGAAAGTAAATGCATGTTAATCAATTAAAGGCAAAGTTGAA GTTGTGCAATTAGCATACTTGCCATCTGGTCTATGTTGAGATCTCATACTGATGCCTGACATGATTCCCTTTTCACTAAA GCAGGAGTAGCATCATTCTTTCTGCTTTCTAACCTTGCATTGTTCATTTTTTGGTTTCAGTGTCAGGTTCACAAATTGCT TTTGGTGATGGAGGAGTAGCATCTTCTATCAAATCCTATGGATTTCCCAGGGGTGGGAGCAGTGCCAGCGACGGCCAAAA TTCAGAATTCAATGGTATGTTTCATCACAGCATTTTTTTAAACAGACTGCAACAAGTTGTTTTGCTCTTTGCTGCATGAT CCATCCTTCTATTAACAGTACTTGGGTGATTCTTTAACCACAGGTAAGCTGCAGAAAGAGTACAAAGAACCATGGGTAAG TATACTGAGTGAAATAAATATGCTTTTTCATTGATTTACTGTCTTTGTTTGTTTCATGTATGAGTTATTGGAATTGTAAG TTTTCATTCGTGTCTCATCTTGAAGTATTGGTGTTGTGATATTGCTGCAGGACTATTACAGTGAATATCCAACAACTCTT CCTTTGAGGAGACCATATTCAGGAAACCCAGGTATATTCCAGGATCCATCTTTTGATAAAAAGAGAATGGAAATTAGTAA CCGTTGATGAAATTCTAATAACTCCGGAATCGAGTCATGTCCATTAATCAATTTGAGCAACAATACTGGTTCTGCCCATT CACAGAATTATGAGGTCTTGCTTACATTCATATAGTGTTATGAAACAACTATCCAAAATGTGTAAGCTATTGGGTAAATG CACACGAATGTTTTTATATTATATTCCAAACCACTTGGTCATACGGTCTGATACCATGTCATGAGCCAACTATTCCAAAA GTTTACACTCTTTGGTAAATGATTTTATATTATATTTCTAACATATAGCATCAACATAATGTTCTGATAGAATAATTTTA TAAGATGTCAAGTGGCTTTAACTTCACATAACCTTCTCCTTTCACTGGACTTTAGTTGTTGCTTGAAAACAGCATTCTTT CTATTATGCAATATCAAGTGGTTTTAACTTCACATGATGTTCTGATAGAATATCTTGATGAGGAAGAATTTGGGGAGGCT GCAGAATCCAGAACTTATGATGAAGATTCAGCAAATTCAGCAGTGGAGCTAGGCCTTTTGGTGAGTAAACTGAAATTTAA GAAATCAAATTTATTAACTGCAACTTGCTTCAACTATTATAATAGTTACTTTGAGCAAATTGTTGGTAGGAGGAAAACCC AGAGACAAGTATGTTCTTGATGCGTTTACCAACTTTGCCTATCCCTAAACAATCTGCTACTGCTGGAGGGAAAGGTGATA ATGGAAACAACACTAAACGTCCTGAAGGTTCAAAAGATGAGAAGAAGAAGCCTGAAAATAAGTTGAAGAACTTACCAGCT GGCTACATGGGCAAAATGGTTGTCTACAAGAGTGGTGCAGTCAAGCTGAAGCTTGGTGATACCCTTTATGATGTAAGTAC TGCAAACATAAGATAAACTTCAGGAGTATTATTTAGTGCAAGTTTCGCTTTCCGTTTAAAAGTGGATTAACATTGAATTC AATGGAAATTCGAACGTTTAAAGTGAAAGTTGTATGTGAAAAGCATGTTAGATGCATAGTAACATCACCAATTTTAGTGG ATCACTTTTTGAAAATCTTATCCACCCACCCATTTGAATGAGTTAATAATGCATAGGTTGATTATGTTAATGTTGGTTTC TTTCTTAGCTAAATTTTTGTGTTGTGTTTTTTAATTTGGTTGCAGGTTTCCTCTGGTATGAACTGTTCATTTGCTCAAGA TTTGGTAACAATCAACACTGCTAAAAAGGATTGTTGCGCAGTTGGGGAGATTAGCAAGTGTGCTACTATAACTCCGAACG TGGATTCTCTTCTCGACAGTCTTGCTGGTTTATGATAAATTGAACTTGTTTTACTTTGAAGTATAGTTTGATTCATTTTT ATAACATTATTAAAATTATTTGTCTTACTAGTGTTGAGAAGAAAAATATAAGTATTCAGTTTTGGAATATATTAATTTTC TATAAAGAAATTTTTTAAGGTAAGGTTGAAG
CDS sequence (LotjaGi4g1v0326400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTTAGGATCATCCAAAGATGCTCCTGGCGGTGGTGGAAGAAGGAAGGTGAAGTTTGCACCAAGAGCACCGCCCCG TCGAGTGAAGAAAGAAGAAGTTAAATCTGAAGTTGTTGAGGATACTGATGCAAATGTGGCTAAGGATCTCCTCCGGCGTC TTAATGAGGGTAAATTAAGGCACAAAGTTGAGAAAAAAGTGTCAGGTTCACAAATTGCTTTTGGTGATGGAGGAGTAGCA TCTTCTATCAAATCCTATGGATTTCCCAGGGGTGGGAGCAGTGCCAGCGACGGCCAAAATTCAGAATTCAATGGTAAGCT GCAGAAAGAGTACAAAGAACCATGGGACTATTACAGTGAATATCCAACAACTCTTCCTTTGAGGAGACCATATTCAGGAA ACCCAGAATATCTTGATGAGGAAGAATTTGGGGAGGCTGCAGAATCCAGAACTTATGATGAAGATTCAGCAAATTCAGCA GTGGAGCTAGGCCTTTTGGAGGAAAACCCAGAGACAAGTATGTTCTTGATGCGTTTACCAACTTTGCCTATCCCTAAACA ATCTGCTACTGCTGGAGGGAAAGGTGATAATGGAAACAACACTAAACGTCCTGAAGGTTCAAAAGATGAGAAGAAGAAGC CTGAAAATAAGTTGAAGAACTTACCAGCTGGCTACATGGGCAAAATGGTTGTCTACAAGAGTGGTGCAGTCAAGCTGAAG CTTGGTGATACCCTTTATGATGTTTCCTCTGGTATGAACTGTTCATTTGCTCAAGATTTGGTAACAATCAACACTGCTAA AAAGGATTGTTGCGCAGTTGGGGAGATTAGCAAGTGTGCTACTATAACTCCGAACGTGGATTCTCTTCTCGACAGTCTTG CTGGTTTATGA
Protein sequence (LotjaGi4g1v0326400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDLGSSKDAPGGGGRRKVKFAPRAPPRRVKKEEVKSEVVEDTDANVAKDLLRRLNEGKLRHKVEKKVSGSQIAFGDGGVA SSIKSYGFPRGGSSASDGQNSEFNGKLQKEYKEPWDYYSEYPTTLPLRRPYSGNPEYLDEEEFGEAAESRTYDEDSANSA VELGLLEENPETSMFLMRLPTLPIPKQSATAGGKGDNGNNTKRPEGSKDEKKKPENKLKNLPAGYMGKMVVYKSGAVKLK LGDTLYDVSSGMNCSFAQDLVTINTAKKDCCAVGEISKCATITPNVDSLLDSLAGL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 36 | 36 | - | – | |
| PANTHER | 12 | 99 | 88 | 9.1E-96 | – | |
| PANTHER | 12 | 99 | 88 | 9.1E-96 | ||
| MobiDBLite | 88 | 107 | 20 | - | – | |
| MobiDBLite | 88 | 105 | 18 | - | – | |
| PANTHER | 104 | 294 | 191 | 9.1E-96 | – | |
| PANTHER | 104 | 294 | 191 | 9.1E-96 | ||
| MobiDBLite | 185 | 219 | 35 | - | – | |
| Pfam | 190 | 286 | 97 | 3.5E-23 | ||
| MobiDBLite | 201 | 218 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | RNA polymerase III complex | RNA polymerase III, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces 5S rRNA, tRNAs and some of the small nuclear RNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerase I and others of which are also found in RNA polymerases I and II. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template. | ||
| Biological process | Transcription by RNA polymerase III | The synthesis of RNA from a DNA template by RNA polymerase III, originating at an RNAP III promoter. |
Expression pattern of LotjaGi4g1v0326400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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