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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0326900 |
| Transcript ID | LotjaGi4g1v0326900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Stress responsive A/B barrel domain protein; TAIR: AT2G31670.1 Stress responsive alpha-beta barrel domain protein; Swiss-Prot: sp|Q9SIP1|UP3_ARATH Stress-response A/B barrel domain-containing protein UP3; TrEMBL-Plants: tr|A0A1J7I2B0|A0A1J7I2B0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0326900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:70516510..70520937) extracted from Lotus japonicus Gifu genome v1.2.
TGAGAATTGTGTATGTGAGCAATTTGTAAGCACTTCTATAAACGACTTATGGTCCTGAAGTCCTGCCTTGCTGAGTGACT GAAGCTGAATCCACCCAAACATTTATTCAAATTTGAAGTTGTATGCTCAGTTAATAATTTGGTTTGTGCCAATGTTCTGT GGTGCTCGTCCTCTATATTCCCTACCATCTTTTGGGCCGGCCTACATATATTATTAATGGGCCTCAGATCCTACCTACGA AAAAAACGTGCGAAAGAAAGAAAGAAAAGATACAATTAGATTCGAATGAAGACAATTTCATATTCACCAGTCGCATTCCT GTGGTAAACGATGCAGTGTTTAAGACTGAAACCGCCGCTATCGTTTCCAGTCACATTCTCACCTTCCAAACACCTCCGAC GAAATCACCTACCGGCGTGGTCCTCAACCCGATCTCCGATCAAGAGCATGTCAACCACCGTGGAGCACATCGTCCTCTTC AAGGTCAAAGACGACACCGACCCCTCCAAGGTCACCGCCATGGTCAACGGCCTCAGCTCCCTCATCTCCCTAGACCACGT CCTCCACCTCACGGTGGGCCCAATCCTCCGCAACCGCTCCACCTCCTTGACCTTCACCCACATGCTCCACAGCCGCTATA ACTCCAAGGAAGATCTCGACGCCTACTCCGCTCACCCCAGCCACCTCGGCGTCGTCAGGGGGAATGTCCTCCCCATCATC GACGACCTCATGGCCGTCGATTGGGTCGCCGAAGATCTCCGCGGCGATATCGTCACGCCGCAGGGGTCGGCGATGCGACT TACCTTGTTGAAATTGAAGGAGAATGCGGATAGCGGTAAGGTTCTGGGGGTTATCAGAGAAATTCCGGAGAGCTTCAAGC AGATTAGTCAGCTGAGCTGCGGCGAGAATTTCTCCCCGGCGAGAGCTAAGGGCTTCTCGGTTGCTTCCCTGGCGGTTTTT CCTGGACAGGGGGAGTTGGAGGATGTGGATTCGAATGGGGAGGTGGTGAGTTATCATAAGGATAAGGTTAGGGATCTGCT AGAGAGTGTGGTTGTGGTTGATTATGTGGTGCCGCCGCCGCCTGCTCAGTCTGCTAGCCTTTGATAAGGTTATTGCTTCT CTTGCCATTGTAACTGTTCAATCATTGTTTTTGCTTTATCATCTTCATGTATTAAGCCTTCAATGCTTTGTTGTGATGTG CAATGTGGGGAATAAGGTTTGAGAGAGAATGCTTTCTTGTGGTGTGCAATGTGGGAAATAATGAAATGTTAATGGTTATC TTTTAGTTTCTACTTATTTGGTCTTTGGTAATTGGTGCTATTGCATCTGATTTTGGTACTTTAGTTAGTTTTATGTGTAG TAGATTCCACCTAAGGCCAGCATGGTCTATGCATGTTGTAGTTATATGATTCTTACTTTAGCAGCTCATGTAGAAGGAGC TAGTCATCCATCCTAGACATGGAATTAATCGGCACCGAACTTAAGAATGTCCATCAATGTTGATTTTAATTTATTGCTTG ACTTCTTACTTCTTAGTGTGTGTTTGGATAACAGTTCGGTACGACATAAACACACTTTTAACTCAATCCATGAAAAGAGT GATGTTCACTTTTTGTATTGAAGTGTGTGCTAACATCCATTTACATTGGTGCCGAGGATATCCAAACATACTCTTAGTTA ATATATAGTTGAAAACAGCATAATGATATGCTGCATACTAATTACACACTTCTTTAAACAAAATAATTTACCAGCAAAGA GCATCCTCAGTCCTCACCCATAGCTTCACACTTTACCCGCCCCCTTTCCAAAATTGCTTACACTCCTCATCATTATGGCC TCTCTTTTCTCGTTCTGTATTCAATCTGGCACATTCATTCTCCACCATTACTATCCCAAATCACCTTTGAACATTCTCTG CAACCTTAAAATACATATGTGGCCTAATTCTCATTCATACCTACACAAAAGGAAGCCTAGCGTGTTCCCACAAGAAAGCA TGCATATCCTGTTGACTATTGAGAGGTTTCCGCTTCCCTTGGATGTAGGGCATTGGATCTTAGAAGCTGTTCCACCTATT TCTCTGCTTTGGATTCTTTGCTTTTTCTCTCTATAGCCCAAGGCTAGATCATCACTTATATATATGTCTCGTCGGTGTAT AATAACCCACAAAATCCACTCTAAAACAGTAATTTTATATCATACTCAAGGCCAGCTTAACCCATATCGGCCTTTCTGTT CCCCAGGTGAAGATCTGGTAATACAAATCTAGAAATTCACCACTATGTGTTAGGTGACAGGTTTATATATTTTTTGGTGT ATCCACTGATTACTGACCTGATGTTTTCCTTACCCAAAAGCTCATTAACCCTAGTGTCTCTCATCTTGATAACTTTAATA AATTTCTGATATCTGATAAACTTGATGCTTGCTGTATTATAGGCCCTTATATAGTTATATTGTGTGCTTGTAGCTGTTAA TTTGTTTGAACTTCCCCCTTGTTTTTTTTTTATCGAAAACTGTAACTGCATATGTAAACTTTTTATCAATGTTGTCAAAA TGGAGATTTTACCCTGGGTTGGGACTTGGGAGCGGGGTGAAAGATTGTAAATGGTTGGATTATAACATGGATTGTAAGTT CCTACAAAAAATGTGATATTATAATTAAACATGACAATAGCTCTTATTTTGTTGCTAAGCTCCAGATGTTGATCAGTTTT GTACATATGATGTGCTCTAGATGTTACTCATGTTTCAAACTTTAAATGCTTGTTATTGTGAGCGCGGTGAGGGTAGTTTG ATAGTTAGTGTGAGTCTGAACGGGGGTGTCCAGTGTGGATGGCTGAAGTTGCAGACAATGTGACTTGAGGATGGAGTTAC TGATAGTAGGAAGAGTGCTGGAGTTTGAGGTTTACAATGGAGGTTCAAGAAGATCATGAGGCCATGAGGGTAGTAAGTTT CGGTGGCTAGAAATATGGCCGTCATGGATTCTTGGTCACGAATATGTGATCGGAGCTCCAGTAACATGACAAGATAGCAG TGGGGAATGGAAAATGGTAGAGTGAGGATTAAAGATTATATGACGATTCTTGGTCGCCGTCATGGTAGTTTAAACTTTCG CTGACCCACTACGCCCAAATTATATAAGTGTGGTACTAAACCAAAAAAAAAAAACAAATGGTATGAACTAAACCAAATTT AAGTATATATTAGTAACTAAACTTGTTTTAGCCTTTATTTATTATTTCTTAATGAAATGGACGAGACATCTCAATCCTTA TCATCTTTTTTTTGGGTACATCGGAATGATAAATGGTACCCGCCAGGAATCGATTCCTGGACCTCATACTACCCAACTCA TATGTTCCTCAGCTCCTACCACTTGAGCTATCCTACGGGGGACCAATCCTTATCACCTGACACGAGGTAACTTATTTCAA CTATAAACTTCAACTTCAAAGTATTAGGAATCATTATTAATCAGCCATTATAATCACAAGCTGCGCATATGAAGTGCACA AAATCTTTGACCAAATTGCAATGCAACAGCAAAGAATCTAACTTTCAACATCAACAATGAACGGCAGTTGATCGATGTAA CTCACACTCTTTGCTTTGATTTGAGTTGGATTCAGCGGACAGAAACAGAAAGGAAACGTGGGATCCACACATTTTTTTTT AGTCTTCTCATCTAGAAATGAGAAAAGCAGGTGTCTATATAAACATATGAAAAGGAAGTGGAGGAAAAAAGTGAAGCAGC TCTCTTATTTTAATCAAGATATGAATTCAGTTCTGGCGGGTAAGGGCGTTGGCTTGACTGTGTTATTCTCTTCTGGTCGG GTTGGAGGTGAAGATTGGCAAAGTTCATCATTCAATGGTGGGAAGTGGAGGAAAAAAGTGAAGCAACTCTCTTATTTTAA TCGAGATATGAATTCAATTCAGGCGGGTAAGAGCGTTGGCTTGACTTTGTGTTCTCTCTTGGTCGGGTTGGAGGTGAAGA TCAGCAAAGTTCATCATTCAGTGGTGGAGTGTTTATAGAAAAGAGGGTGTCGCCCGTAGGAATAAAAATGTTTATGGTCT CTTAAAATAGTGAATTATTGATTTTAGGGGAAATTACATTCACCTCCCTTGGCTTAACATTATTCACACGTAGTTTACAA AATGCATTGATCTCCCCCCTTCATATACTACTTTGAATAATAGAGAGGTGTTGTGTGTTGTAATGATAAATTTTAGAGGA AGTCAGTCTAATAATTATAAAGCTCGGGAGAGGATAGGGCAATGTTCTCAATAAAACAAGAGTGTAAGTGTCTTGTTAAA ATATAGAGGGATGTCAATGCAACACCGGTAAACATCAAAGGGAGGTGAGTGCAATTTGACATTTATTTTAATCCCCTTTA ATTTTTTTTTGTTGATTTTGATCATCAC
CDS sequence (LotjaGi4g1v0326900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGTGTTTAAGACTGAAACCGCCGCTATCGTTTCCAGTCACATTCTCACCTTCCAAACACCTCCGACGAAATCACCT ACCGGCGTGGTCCTCAACCCGATCTCCGATCAAGAGCATGTCAACCACCGTGGAGCACATCGTCCTCTTCAAGGTCAAAG ACGACACCGACCCCTCCAAGGTCACCGCCATGGTCAACGGCCTCAGCTCCCTCATCTCCCTAGACCACGTCCTCCACCTC ACGGTGGGCCCAATCCTCCGCAACCGCTCCACCTCCTTGACCTTCACCCACATGCTCCACAGCCGCTATAACTCCAAGGA AGATCTCGACGCCTACTCCGCTCACCCCAGCCACCTCGGCGTCGTCAGGGGGAATGTCCTCCCCATCATCGACGACCTCA TGGCCGTCGATTGGGTCGCCGAAGATCTCCGCGGCGATATCGTCACGCCGCAGGGGTCGGCGATGCGACTTACCTTGTTG AAATTGAAGGAGAATGCGGATAGCGGTAAGGTTCTGGGGGTTATCAGAGAAATTCCGGAGAGCTTCAAGCAGATTAGTCA GCTGAGCTGCGGCGAGAATTTCTCCCCGGCGAGAGCTAAGGGCTTCTCGGTTGCTTCCCTGGCGGTTTTTCCTGGACAGG GGGAGTTGGAGGATGTGGATTCGAATGGGGAGGTGGTGAGTTATCATAAGGATAAGGTTAGGGATCTGCTAGAGAGTGTG GTTGTGGTTGATTATGTGGTGCCGCCGCCGCCTGCTCAGTCTGCTAGCCTTTGA
Protein sequence (LotjaGi4g1v0326900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQCLRLKPPLSFPVTFSPSKHLRRNHLPAWSSTRSPIKSMSTTVEHIVLFKVKDDTDPSKVTAMVNGLSSLISLDHVLHL TVGPILRNRSTSLTFTHMLHSRYNSKEDLDAYSAHPSHLGVVRGNVLPIIDDLMAVDWVAEDLRGDIVTPQGSAMRLTLL KLKENADSGKVLGVIREIPESFKQISQLSCGENFSPARAKGFSVASLAVFPGQGELEDVDSNGEVVSYHKDKVRDLLESV VVVDYVVPPPPAQSASL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 21 | 251 | 231 | 1.6E-92 | – | |
| PANTHER | 21 | 251 | 231 | 1.6E-92 | – | |
| Gene3D | 36 | 143 | 108 | 3.6E-21 | – | |
| SUPERFAMILY | 40 | 143 | 104 | 1.23E-23 | ||
| ProSiteProfiles | 44 | 138 | 95 | 26.145 | ||
| SMART | 44 | 140 | 97 | 1.5E-22 | ||
| Pfam | 44 | 139 | 96 | 8.3E-21 | ||
| SUPERFAMILY | 153 | 250 | 98 | 1.57E-11 | ||
| ProSiteProfiles | 154 | 245 | 92 | 15.414 | ||
| Gene3D | 155 | 248 | 94 | 5.4E-6 | – | |
| SMART | 156 | 247 | 92 | 0.35 | ||
| Pfam | 156 | 247 | 92 | 2.9E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0326900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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