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LotjaGi4g1v0327000.1

Overview

Field	Value
Gene ID	LotjaGi4g1v0327000
Transcript ID	LotjaGi4g1v0327000.1
Related isoforms 1	LotjaGi4g1v0327000.2
Lotus japonicus genome version	Gifu v1.2
Description	Protein ELF4-LIKE 4; TAIR: AT1G17455.1 ELF4-like 4; Swiss-Prot: sp\|Q570U6\|EF4L4_ARATH Protein ELF4-LIKE 4; TrEMBL-Plants: tr\|I3SI69\|I3SI69_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0327000
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr4:70527704..70531094) extracted from Lotus japonicus Gifu genome v1.2.

CCGAGCGTGACTGTCAAATCTACATATTCTCTCTGTGTTCTCTCTCTCTCTCTCTCCCTCTCTCGCTCAGAATTCACTTC CTCTGCAGATTCGTCTCCCCCTTTCAATCTCTGTCTCTTCTCCATCTCCATATAATGTTTCAGATTTCCAAGGTACGAAC GATTCTTCATTCATTCATTCTAACAACAACAACTACTATATTATATTATTCTCACAATCTTCTTCTCAATCATTTATTTA TTTAATTCAATCTTAATAAAAAAATAACAACATGGTTTGCTTCGATAAAATGTGAATTTTGTTCTCTAGTCCTTGTTTCT GCTAACTGATTGATTTTGTGATCTCCCTTTCACTCAGACATTGGTTTTATCACTACACCTTTCCTTCGTTGACCTCCTTC CTCATTCAACAAAAAATATTTACAGAAGATTTCTGCATTTGCAATTTAGTTAGAGGGTTTGTGATGCTTTGAAATCCACA ATATCAAATGGGTTTTTTCATTTTTTGTTTTTCTTTGACCAAATTCCTTGTTTTCTCAAATTGATGTGAAATTTCGGATT TTTCTGAATTTAAAGTAATGAGAATCTGAGATTATTAAATGGGTTTTTTAGCTTTTCTGCAAATGTTTGTGAATGTTCCT TCTTTTTCATTTTTGTCTTTCGTAGTAATTTTGCTTGAAAAAGGTTAATGGAAACTTTTTCTGCAATAGTACATCATCTT CTCTGCATCACTGACTTTACTTTTGAATTTTTTTTTTGGTTTTTGAGATTCTGGTTTGGAACTCTGTGCTTTAGGTAGGT ATTTCCTGAGGACATTAAAAAAGGTTCCTTTTATGGAAATGGGATCTGCTTTTTCCCATCTCATCATTAAAATATATATA TAGTTATGTAGTAGCATCAATAAAAATAAAATAGTAGGAGTACTAATAGCAACAGTAGTAGTAATAATAATAGTAATTGA TGCTTTATAATCTGATTCCTCTGGTAAAGTAACTCATGGTGGTCATGATTTTATACTACAGAGATTGTCTCATCTGCTTA ATGTCCTAAACAATTCCAAAACTGCTTATGTTTTGTTTTGTCTCTCTGTTTTGGTTAGTGCAGGCAGGTATACACATAGG AGGATATGATTATGGATAGGTTTAAATTAAAATATTTTTATACACTTTCTTCTTCTTCATTACATTTTTTGTTTTTTTCT TCTTATCTTTTTCTTTATTTTGCCTCATGATGCAGGGGTGACTATTCTGACTTGGTTAAGCTTCTGAGTTCTGACTCACA GAAAAAATGGAGGGTGACACATTCTCTGGTGGTCTTGGCAATGGTAGTACCCAGGTTGTTGATGGCAAGATCTTGCAGAC ATTTCAGAAAAGCTTTGTTCAAGTCCAGAACATCTTGGATCAGAACCGGGTACTCATCAATGAGATAAACCAGAATCATG AGTCTAAAGTCCCTGACAATCTCAGTAGAAATGTTGGACTTATTAGGGAGCTCAATAACAACATCAGAAGAGTGGTTGAC CTTTATGCGGATCTTTCAAGTTCCTTTACCAAATCCATGGATGCTTCTTCTGAGGGAGATTCCACTGGTGCTGTGAGATC AGATGGGAAAGCTGGCCACAAACGACTCAGGCCTGCTTAGGGAGGAGTTTGTTTTCTTTTTCCTCAATTTTTTGTTTTGT TTGGTGGGAGATGCACATCACAATTGTGCAGAGGGTTAGATAGAAGATTAGGTTTAGTGCATGTTTGAAAATCATTCGGC AAATGATTGTGAAATCAGAATTGATTCTGATGAGAAGCTCAAGTGAATAGCTTCTGTATGTCAGAATGGATTTTGAAGAA ATAGAAAATGATCCAAACATAACATGCTATCAGCTCAAGTTCTCTTGTATTACAGAGCTTTCTTTACTCTTTAGCTTCTC AATTATTGCTTATGCTTCAAATAAATAAATAAAAAATGATTTTCCAGAATTCCTCTGATTATAACCTTGTAACTGTGGAT CTAATGGAAATCAAACATATTTTGTGTTACTAATTTAACCAATGCTGCTGTAATTCAAAAGGTGAATAAATATGCCTTTT CTTCCCCATTCAATGTGACTGTTTTTCCATTCGGTGGTGAAATAAAATCACAGTGAACAGAAACAACTTTCCTTGAATTT TGTGGTTGTCCCGCGATTTCTGCATTACCTTTGTTTTCCACCTTGAGTCCAAACATGCACTCAGTTGAGCTTGAACATGT GACAGAATGTAATGTAATTTAATGGGCCTTTTCTCTTTTATCTGGTTTTTGTTTGCTGAGGGCTTTTAGCTTTGCTAAAC TTTTTATGAGTTTCTGCTTGTCAAAAGGGCTAAAGGGTGTTCAAAATTATCCTCTGTGCAACTTCAACCAAAATGTTGTT CCCAATTATGACTTTACTCAAGAACTGAGACTCTGAGAGTGAGAAGGTTTGCAGAGTTGCAGTTACTGTTTTAGGCCTAT TCACATGTATTCTTTACCAAGAAAACTCTACCTGGTTTTTTCTGTTCATTTGTTTCCCTGTGGGTGTGACAACTGAGAAC TAAAAACTGCTTACATATGTGTGAAGATGCTCTGAAACAGATGGTAGAAAGTAGCTTTGGATATTTAGATAAAAATGTCT TTTCGGTTCCCAATCACTCACCACCACAAGAACAGAATCTCAGATAAACGATGATGTGCTTTTGACTATTTTTTTTTTCA GTTTCTTACCCTCAATGACTAGTGTTCTCAGCTGCAGATATGTGTGTGAATAGTGACTCCCAATAACAGGACAAAGGGTC CCAAAGGTTCTCTTTTAGGATGAAACTGAACTTCTCCATGCTTATCCCTTCCTACTTAGTTTTTTCTCTTTTACTTTCCA ATTTCCCCCCTCCTTTTTATTCTCTTTATGAAATTCATGTCCTATATGACAACCTTCTAGTTGATACTTGACAATTCCTT GTTTGATTGCTCAGATGTCTTTGTTGGTGGACCCTGTTTATGGCATCCTTATTTCATGATCTTAGAAGAGAGGCCCCCAC CTCAGTGATTGCTGACGATGGCCTCTTTCTGGTTTAGATTTTGCACATTGAAGGAGTGGACCTCTTCTTTCTGTGTAAGA TTGATCACTTTGTCAATCATCTCCATTCATAATAAATTGACTTACTAGGATCTAGCTACAATTGTTAGACCATCATTCGT CCATGACTCCATGGCTTTCTTGGACTGTCACTTACAAATTCAATATTACATGTACATATAATAACATAATTATGAAGCTT TCATGTACAAGATGCTGTAGTTACTCTCAAGCCAATGTAAAATAGTTTTTCTAGAAGATGTCAAATTCTTATGGAGAGGT TCATGGAAGATGACAAATTCCTATATAGAAG

Download Genomic Sequence

CDS sequence (LotjaGi4g1v0327000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGGGTGACACATTCTCTGGTGGTCTTGGCAATGGTAGTACCCAGGTTGTTGATGGCAAGATCTTGCAGACATTTCA GAAAAGCTTTGTTCAAGTCCAGAACATCTTGGATCAGAACCGGGTACTCATCAATGAGATAAACCAGAATCATGAGTCTA AAGTCCCTGACAATCTCAGTAGAAATGTTGGACTTATTAGGGAGCTCAATAACAACATCAGAAGAGTGGTTGACCTTTAT GCGGATCTTTCAAGTTCCTTTACCAAATCCATGGATGCTTCTTCTGAGGGAGATTCCACTGGTGCTGTGAGATCAGATGG GAAAGCTGGCCACAAACGACTCAGGCCTGCTTAG

Download CDS Sequence

Protein sequence (LotjaGi4g1v0327000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEGDTFSGGLGNGSTQVVDGKILQTFQKSFVQVQNILDQNRVLINEINQNHESKVPDNLSRNVGLIRELNNNIRRVVDLY ADLSSSFTKSMDASSEGDSTGAVRSDGKAGHKRLRPA

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR33469:SF11 View details on PTHR33469:SF11 Search for proteins/transripts with this domain View external data on PTHR33469:SF11	1	115	115	3.6E-57	–
PANTHER	PTHR33469 View details on PTHR33469 Search for proteins/transripts with this domain View external data on PTHR33469	1	115	115	3.6E-57	IPR040462 Show description in modal box View details on IPR040462 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF07011 View details on PF07011 Search for proteins/transripts with this domain View external data on PF07011	18	98	81	1.1E-40	IPR009741 Show description in modal box View details on IPR009741 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	87	117	31	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	87	101	15	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0042753 View details of GO:0042753 AmiGO InterPro QuickGO	Biological process	Positive regulation of circadian rhythm	Any process that activates or increases the frequency, rate or extent of a circadian rhythm behavior.	Subterm of View details of GO:0042752 View details of GO:0048518 Positively regulates View details of GO:0007623

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0327000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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