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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0327000 |
Transcript ID | LotjaGi4g1v0327000.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Protein ELF4-LIKE 4; TAIR: AT1G17455.1 ELF4-like 4; Swiss-Prot: sp|Q570U6|EF4L4_ARATH Protein ELF4-LIKE 4; TrEMBL-Plants: tr|I3SI69|I3SI69_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0327000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:70528990..70529343) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAGGGTGACACATTCTCTGGTGGTCTTGGCAATGGTAGTACCCAGGTTGTTGATGGCAAGATCTTGCAGACATTTCA GAAAAGCTTTGTTCAAGTCCAGAACATCTTGGATCAGAACCGGGTACTCATCAATGAGATAAACCAGAATCATGAGTCTA AAGTCCCTGACAATCTCAGTAGAAATGTTGGACTTATTAGGGAGCTCAATAACAACATCAGAAGAGTGGTTGACCTTTAT GCGGATCTTTCAAGTTCCTTTACCAAATCCATGGATGCTTCTTCTGAGGGAGATTCCACTGGTGCTGTGAGATCAGATGG GAAAGCTGGCCACAAACGACTCAGGCCTGCTTAG
CDS sequence (LotjaGi4g1v0327000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGGTGACACATTCTCTGGTGGTCTTGGCAATGGTAGTACCCAGGTTGTTGATGGCAAGATCTTGCAGACATTTCA GAAAAGCTTTGTTCAAGTCCAGAACATCTTGGATCAGAACCGGGTACTCATCAATGAGATAAACCAGAATCATGAGTCTA AAGTCCCTGACAATCTCAGTAGAAATGTTGGACTTATTAGGGAGCTCAATAACAACATCAGAAGAGTGGTTGACCTTTAT GCGGATCTTTCAAGTTCCTTTACCAAATCCATGGATGCTTCTTCTGAGGGAGATTCCACTGGTGCTGTGAGATCAGATGG GAAAGCTGGCCACAAACGACTCAGGCCTGCTTAG
Protein sequence (LotjaGi4g1v0327000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGDTFSGGLGNGSTQVVDGKILQTFQKSFVQVQNILDQNRVLINEINQNHESKVPDNLSRNVGLIRELNNNIRRVVDLY ADLSSSFTKSMDASSEGDSTGAVRSDGKAGHKRLRPA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 115 | 115 | 3.6E-57 | – | |
PANTHER | 1 | 115 | 115 | 3.6E-57 | ||
Pfam | 18 | 98 | 81 | 1.1E-40 | ||
MobiDBLite | 87 | 117 | 31 | - | – | |
MobiDBLite | 87 | 101 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Positive regulation of circadian rhythm | Any process that activates or increases the frequency, rate or extent of a circadian rhythm behavior. |
Expression pattern of LotjaGi4g1v0327000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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